Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G1536 Fragaria x ananassa HOM05D005588 ORTHO05D006615 3.8e-194 681.4 361 100.0
FvH4_4g36750 Fragaria vesca HOM05D005588 ORTHO05D006615 2.4e-193 678.7 361 99.2
FAN07G0754 Fragaria x ananassa HOM05D005588 ORTHO05D006615 1.4e-188 662.9 361 97.2
RcHm_v2.0_Chr4g0446471 Rosa chinensis HOM05D005588 ORTHO05D006615 5.5e-169 597.8 361 81.2
Prupe.1G345600 Prunus persica HOM05D005588 ORTHO05D006615 1.5e-134 483.4 357 70.9
MD16G1000700 Malus domestica HOM05D005588 ORTHO05D006615 4.9e-125 451.8 345 71.6
Thecc.02G311800 Theobroma cacao HOM05D005588 ORTHO05D006615 2.9e-109 399.4 348 60.9
Duzib248G1275 Durio zibethinus HOM05D005588 ORTHO05D006615 1.9e-108 396.7 348 59.5
CANSAT64G0248 Cannabis sativa HOM05D005588 ORTHO05D006615 3.0e-106 389.4 343 60.6
Duzib251G0713 Durio zibethinus HOM05D005588 ORTHO05D006615 1.9e-105 386.7 344 59.9
TAR629G1265 Trochodendron aralioides HOM05D005588 ORTHO05D006615 9.5e-105 384.4 342 60.2
Actinidia11175 Actinidia chinensis HOM05D005588 ORTHO05D006615 2.1e-104 383.3 357 58.8
TWI53G2090 Tripterygium wilfordii HOM05D005588 ORTHO05D006615 2.1e-104 383.3 343 59.5
Dinv17600 Davidia involucrata HOM05D005588 ORTHO05D006615 1.8e-103 380.2 329 58.7
CSS0004178 Camellia sinensis var. sinensis HOM05D005588 ORTHO05D006615 5.2e-103 378.6 339 59.3
Actinidia24397 Actinidia chinensis HOM05D005588 ORTHO05D006615 6.8e-103 378.3 357 58.8
GSVIVG01010179001 Vitis vinifera HOM05D005588 ORTHO05D006615 2.6e-102 376.3 344 59.0
Manes.11G109700 Manihot esculenta HOM05D005588 ORTHO05D006615 3.4e-102 375.9 330 58.5
Ciclev10032024m.g Citrus clementina HOM05D005588 ORTHO05D006615 5.4e-100 368.6 348 56.0
PSO063G5510 Papaver somniferum HOM05D005588 ORTHO05D006615 5.4e-100 368.6 337 57.0
TAR371G0486 Trochodendron aralioides HOM05D005588 ORTHO05D006615 4.6e-99 365.5 345 55.4
Gorai.013G027800 Gossypium raimondii HOM05D005588 ORTHO05D006615 6.0e-99 365.2 353 56.1
Potri.007G070600 Populus trichocarpa HOM05D005588 ORTHO05D006615 6.0e-99 365.2 349 55.3
Gohir.A13G026000 Gossypium hirsutum HOM05D005588 ORTHO05D006615 1.7e-98 363.6 353 55.8
Eucgr.G02567 Eucalyptus grandis HOM05D005588 ORTHO05D006615 6.6e-98 361.7 343 55.7
PSO782G2071 Papaver somniferum HOM05D005588 ORTHO05D006615 8.6e-98 361.3 337 56.1
Atru.chr11.1235 Acer truncatum HOM05D005588 ORTHO05D006615 5.6e-97 358.6 342 56.7
Rhsim06G0125900 Rhododendron simsii HOM05D005588 ORTHO05D006615 7.3e-97 358.2 344 55.8
arahy.Tifrunner.gnm1.ann1.HXF7IN Arachis hypogaea HOM05D005588 ORTHO05D006615 1.6e-96 357.1 341 51.9
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 1.1e-95 354.4 350 52.0
Phvul.003G006600 Phaseolus vulgaris HOM05D005588 ORTHO05D006615 1.1e-95 354.4 343 53.4
VMungo0251G1670 Vigna mungo HOM05D005588 ORTHO05D006615 1.2e-94 350.9 342 52.3
Glyma.09G281400 Glycine max HOM05D005588 ORTHO05D006615 1.7e-93 347.1 342 53.8
MELO3C024032.2 Cucumis melo HOM05D005588 ORTHO05D006615 4.9e-93 345.5 350 54.6
MSTRG.11941 Avicennia marina HOM05D005588 ORTHO05D006615 1.4e-92 344.0 328 55.8
Lalb_Chr04g0258921 Lupinus albus HOM05D005588 ORTHO05D006615 1.4e-92 344.0 345 52.8
TPR.G32342 Trifolium pratense HOM05D005588 ORTHO05D006615 1.9e-92 343.6 339 54.0
Medtr4g074600 Medicago truncatula HOM05D005588 ORTHO05D006615 5.4e-92 342.0 350 50.6
CsaV3_3G031490 Cucumis sativus L. HOM05D005588 ORTHO05D006615 1.6e-91 340.5 350 53.4
Glyma.20G004400 Glycine max HOM05D005588 ORTHO05D006615 1.6e-91 340.5 342 52.9
Medtr1g036390 Medicago truncatula HOM05D005588 ORTHO05D006615 1.6e-91 340.5 329 54.7
AL3G31930 Arabidopsis lyrata HOM05D005588 ORTHO05D006615 7.8e-91 338.2 325 55.1
Migut.A00690 Erythranthe guttata HOM05D005588 ORTHO05D006615 1.0e-90 337.8 322 54.3
Lj6C721G15 Lonicera japonica HOM05D005588 ORTHO05D006615 1.3e-90 337.4 322 53.7
Cc11_g00190 Coffea canephora HOM05D005588 ORTHO05D006615 3.9e-90 335.9 353 51.6
Psat6g098600 Pisum sativum HOM05D005588 ORTHO05D006615 3.9e-90 335.9 332 53.9
Lalb_Chr17g0338031 Lupinus albus HOM05D005588 ORTHO05D006615 8.6e-90 334.7 343 56.6
AT3G18620 Arabidopsis thaliana HOM05D005588 ORTHO05D006615 3.3e-89 332.8 325 54.2
CARHR094000 Cardamine hirsuta HOM05D005588 ORTHO05D006615 3.3e-89 332.8 322 55.0
Carub.0003s1840 Capsella rubella HOM05D005588 ORTHO05D006615 4.3e-89 332.4 325 54.5
HanXRQChr17g0540781 Helianthus annuus HOM05D005588 ORTHO05D006615 4.3e-89 332.4 341 53.7
Nitab4.5_0002392g0080 Nicotiana tabacum HOM05D005588 ORTHO05D006615 4.3e-89 332.4 358 52.8
arahy.Tifrunner.gnm1.ann1.J0Y6Y5 Arachis hypogaea HOM05D005588 ORTHO05D006615 7.3e-89 331.6 360 49.2
Aqoxy3G04274 Aquilegia oxysepala HOM05D005588 ORTHO05D006615 9.6e-89 331.3 328 55.8
SGA_v2.0_scaffold173G39109 Striga asiatica HOM05D005588 ORTHO05D006615 1.6e-88 330.5 337 53.4
AUR62017670 Chenopodium quinoa HOM05D005588 ORTHO05D006615 2.8e-88 329.7 341 52.5
Lsat_1_v5_gn_3_33621 Lactuca sativa HOM05D005588 ORTHO05D006615 2.8e-88 329.7 364 47.8
BcaC05g28591 Brassica carinata HOM05D005588 ORTHO05D006615 3.6e-88 329.3 321 57.9
A03p40750 Brassica napus HOM05D005588 ORTHO05D006615 3.6e-88 329.3 327 54.1
C05p46980 Brassica napus HOM05D005588 ORTHO05D006615 3.6e-88 329.3 321 57.9
BolC5t33427H Brassica oleracea HOM05D005588 ORTHO05D006615 3.6e-88 329.3 321 57.9
Sp3g16690 Schrenkiella parvula HOM05D005588 ORTHO05D006615 3.6e-88 329.3 322 54.0
PGSC0003DMG400032559 Solanum tuberosum HOM05D005588 ORTHO05D006615 3.6e-88 329.3 345 51.3
BcaC01g03687 Brassica carinata HOM05D005588 ORTHO05D006615 4.7e-88 328.9 327 53.8
BolC3t17260H Brassica oleracea HOM05D005588 ORTHO05D006615 4.7e-88 328.9 327 53.8
PGR142G3609 Punica granatum HOM05D005588 ORTHO05D006615 4.7e-88 328.9 340 52.6
EL10Ac9g22925 Beta vulgaris HOM05D005588 ORTHO05D006615 6.2e-88 328.6 323 52.9
C03p49620 Brassica napus HOM05D005588 ORTHO05D006615 6.2e-88 328.6 327 53.8
BcaB04g18995 Brassica carinata HOM05D005588 ORTHO05D006615 1.1e-87 327.8 322 54.3
BraA03t13232Z Brassica rapa HOM05D005588 ORTHO05D006615 1.1e-87 327.8 327 53.8
Sopen04g004500 Solanum pennellii HOM05D005588 ORTHO05D006615 1.8e-87 327.0 345 51.0
Nitab4.5_0000139g0120 Nicotiana tabacum HOM05D005588 ORTHO05D006615 2.4e-87 326.6 346 51.7
BcaB06g25914 Brassica carinata HOM05D005588 ORTHO05D006615 1.2e-86 324.3 321 57.6
Solyc04g009380.3 Solanum lycopersicum HOM05D005588 ORTHO05D006615 1.5e-86 323.9 326 52.1
MBI03_g24016_MAGBIO Magnolia biondii HOM05D005588 ORTHO05D006615 2.0e-86 323.6 321 54.8
HanXRQChr13g0388111 Helianthus annuus HOM05D005588 ORTHO05D006615 3.4e-86 322.8 322 53.4
THA.LOC104820416 Tarenaya hassleriana HOM05D005588 ORTHO05D006615 7.6e-86 321.6 322 55.9
Nitab4.5_0002113g0130 Nicotiana tabacum HOM05D005588 ORTHO05D006615 2.9e-85 319.7 400 44.8
Sed0008330 Sechium edule HOM05D005588 ORTHO05D006615 3.8e-85 319.3 348 51.4
BraA05t21941Z Brassica rapa HOM05D005588 ORTHO05D006615 4.9e-85 318.9 321 57.0
Aa31LG8G5470 Aethionema arabicum HOM05D005588 ORTHO05D006615 6.4e-85 318.5 328 54.0
A05p30990 Brassica napus HOM05D005588 ORTHO05D006615 1.4e-84 317.4 321 56.4
Lj2g0013630 Lotus japonicus HOM05D005588 ORTHO05D006615 2.1e-83 313.5 322 54.3
ECA233G4991 Erigeron canadensis HOM05D005588 ORTHO05D006615 6.0e-83 312.0 328 50.3
Zm00001eb433550 Zea mays HOM05D005588 ORTHO05D006615 3.9e-82 309.3 341 49.6
ECA246G5122 Erigeron canadensis HOM05D005588 ORTHO05D006615 1.1e-81 307.8 345 50.4
arahy.Tifrunner.gnm1.ann1.8S5M3J Arachis hypogaea HOM05D005588 ORTHO05D006615 3.3e-81 306.2 328 53.0
arahy.Tifrunner.gnm1.ann1.7Y84RT Arachis hypogaea HOM05D005588 ORTHO05D006615 1.3e-80 304.3 328 52.7
Lsat_1_v5_gn_8_32400 Lactuca sativa HOM05D005588 ORTHO05D006615 3.6e-80 302.8 322 50.9
TPR.G8237 Trifolium pratense HOM05D005588 ORTHO05D006615 9.0e-79 298.1 304 53.3
HPP92_024425 Vanilla planifolia HOM05D005588 ORTHO05D006615 3.4e-78 296.2 321 48.6
Zm00001eb066460 Zea mays HOM05D005588 ORTHO05D006615 3.8e-77 292.7 332 46.4
Sc10g0006750 Simmondsia chinensis HOM05D005588 ORTHO05D006615 6.4e-77 292.0 325 49.8
CiPaw.09G164500 Carya illinoinensis HOM05D005588 ORTHO05D006615 2.1e-75 287.0 270 54.1
SalBow1G0039 Salvia bowleyana HOM05D005588 ORTHO05D006615 1.3e-72 277.7 348 45.4
Gohir.D13G024600 Gossypium hirsutum HOM05D005588 ORTHO05D006615 1.1e-71 274.6 270 57.4
MD13G1007300 Malus domestica HOM05D005588 ORTHO05D006615 1.8e-71 273.9 171 74.9
Hund00348 Selenicereus undatus HOM05D005588 ORTHO05D006615 3.1e-71 273.1 341 47.2
CAN.G624.25 Capsicum annuum HOM05D005588 ORTHO05D006615 1.1e-68 264.6 289 51.6
AUR62015207 Chenopodium quinoa HOM05D005588 ORTHO05D006615 6.0e-67 258.8 342 44.7
Gorai.009G328100 Gossypium raimondii HOM05D005588 ORTHO05D006615 5.1e-66 255.8 256 54.7
Psat7g173520 Pisum sativum HOM05D005588 ORTHO05D006615 1.5e-65 254.2 277 55.6
Sabra07G0059300 Salix brachista HOM05D005588 ORTHO05D006615 2.5e-65 253.4 263 56.3
ClCG10G011870 Citrullus lanatus HOM05D005588 ORTHO05D006615 7.4e-65 251.9 399 41.4
Peaxi162Scf00363g00733 Petunia axillaris HOM05D005588 ORTHO05D006615 4.0e-63 246.1 343 41.4
Thhalv10021331m.g Eutrema salsugineum HOM05D005588 ORTHO05D006615 9.0e-63 245.0 256 53.5
Nitab4.5_0007261g0090 Nicotiana tabacum HOM05D005588 ORTHO05D006615 3.4e-62 243.0 347 40.3
Os04g0674450 Oryza sativa ssp. japonica HOM05D005588 ORTHO05D006615 2.9e-61 240.0 291 47.4
ATR0626G258 Amborella trichopoda HOM05D005588 ORTHO05D006615 5.5e-60 235.7 312 47.8
Gohir.A05G307500 Gossypium hirsutum HOM05D005588 ORTHO05D006615 1.0e-58 231.5 260 48.5
QL03p043796 Quercus lobata HOM05D005588 ORTHO05D006615 2.5e-57 226.9 164 65.2
TWI74G1417 Tripterygium wilfordii HOM05D005588 ORTHO05D006615 1.3e-56 224.6 161 64.6
CDE05G3190 Ceratophyllum demersum HOM05D005588 ORTHO05D006615 1.1e-52 211.5 201 56.7
Mapoly0055s0077 Marchantia polymorpha HOM05D005588 ORTHO05D006615 3.9e-50 203.0 338 37.0
Sed0002544 Sechium edule HOM05D005588 ORTHO05D006615 2.5e-49 200.3 163 58.9
Pp3c16_1360 Physcomitrium patens HOM05D005588 ORTHO05D006615 4.3e-49 199.5 323 36.2
Peaxi162Scf01172g00038 Petunia axillaris HOM05D005588 ORTHO05D006615 5.7e-49 199.1 348 37.6
Gohir.D05G307832 Gossypium hirsutum HOM05D005588 ORTHO05D006615 3.1e-47 193.4 164 57.3
FAN12G1938 Fragaria x ananassa HOM05D005588 ORTHO05D006615 9.1e-47 191.8 94 96.8
MD13G1007400 Malus domestica HOM05D005588 ORTHO05D006615 8.5e-45 185.3 161 59.6
SEGI_36505 Sequoiadendron giganteum HOM05D005588 ORTHO05D006615 1.4e-42 177.9 153 52.3
SalBow8G1527 Salvia bowleyana HOM05D005588 ORTHO05D006615 2.6e-41 173.7 338 34.3
Haze_19909 Corylus avellana HOM05D005588 ORTHO05D006615 2.8e-40 170.2 251 41.8
SMO146G0139 Selaginella moellendorffii HOM05D005588 ORTHO05D006615 2.8e-40 170.2 323 36.5
Pp3c13_19220 Physcomitrium patens HOM05D005588 ORTHO05D006615 3.7e-40 169.9 341 34.3
Nn4g24927 Nelumbo nucifera HOM05D005588 ORTHO05D006615 6.5e-37 159.1 285 37.5
COL.COLO4_27672 Corchorus olitorius HOM05D005588 ORTHO05D006615 1.2e-35 154.8 152 48.7
vmacro12413 Vaccinium macrocarpon HOM05D005588 ORTHO05D006615 9.7e-33 145.2 164 49.4
AagrBONN_evm.TU.Sc2ySwM_228.4026 Anthoceros agrestis HOM05D005588 ORTHO05D006615 3.8e-29 133.3 197 36.0
Ca_27076_v3 Cicer arietinum L. HOM05D005588 ORTHO05D006615 1.5e-28 131.3 83 71.1
CBR_g50402 Chara braunii HOM05D005588 ORTHO05D006615 3.1e-23 113.6 270 30.4
DCAR_030400 Daucus carota HOM05D005588 ORTHO05D006615 2.0e-22 110.9 171 42.1
TWI74G1107 Tripterygium wilfordii HOM05D005588 ORTHO05D006615 2.1e-19 100.9 106 48.1
Cpa.g.sc63.2 Carica papaya HOM05D007631 ORTHO05D009566 4.7e-19 99.8 108 67.6
Os06g0308900 Oryza sativa ssp. japonica HOM05D005588 ORTHO05D006615 8.3e-16 89.0 78 53.8
AagrBONN_evm.TU.Sc2ySwM_362.2362 Anthoceros agrestis HOM05D005588 ORTHO05D006615 2.3e-13 80.9 81 42.0
ATR0618G212 Amborella trichopoda HOM05D005588 ORTHO05D006615 5.4e-07 59.7 88 38.6
SEGI_31391 Sequoiadendron giganteum HOM05D005588 ORTHO05D006615 5.4e-07 59.7 114 28.1


User provided reference genes

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