Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.8e-192 674.5 380 100.0
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 5.5e-188 661.0 378 98.4
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 3.6e-187 658.3 378 97.6
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.0e-186 656.8 378 97.6
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.5e-185 652.9 378 97.1
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 7.0e-175 617.5 378 92.9
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 5.8e-161 571.2 325 100.0
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 2.4e-154 549.3 376 84.0
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 1.2e-153 547.0 379 82.1
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 1.6e-134 483.4 380 74.7
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 7.4e-132 474.6 381 73.0
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 3.1e-130 469.2 381 72.4
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 9.0e-130 467.6 381 72.4
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 2.6e-129 466.1 381 72.2
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 8.4e-128 461.1 389 69.9
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 3.5e-126 455.7 391 69.8
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 7.9e-126 454.5 392 67.3
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 6.7e-125 451.4 389 67.4
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 1.5e-124 450.3 392 69.6
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 1.5e-124 450.3 389 66.8
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 3.3e-124 449.1 392 67.3
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 1.1e-122 444.1 370 72.7
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 1.8e-122 443.4 380 67.1
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 2.4e-122 443.0 391 65.5
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 3.1e-122 442.6 390 66.9
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 4.0e-122 442.2 380 66.1
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 4.0e-122 442.2 389 67.6
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 9.0e-122 441.0 381 67.2
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 2.6e-121 439.5 390 65.6
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 7.6e-121 438.0 376 69.4
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 1.7e-120 436.8 381 66.7
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 4.9e-120 435.3 386 67.9
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 4.9e-120 435.3 387 66.9
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 8.4e-120 434.5 378 66.7
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 8.4e-120 434.5 378 66.7
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 8.4e-120 434.5 378 66.7
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 8.4e-120 434.5 388 67.5
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 2.5e-119 433.0 387 64.1
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 3.2e-119 432.6 379 63.9
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 5.5e-119 431.8 390 65.6
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 7.1e-119 431.4 367 66.8
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 1.8e-117 426.8 382 64.4
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 2.3e-117 426.4 390 64.6
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 1.5e-116 423.7 379 65.4
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 2.5e-116 422.9 380 66.1
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 4.3e-116 422.2 384 66.1
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 1.3e-115 420.6 381 64.0
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 2.2e-115 419.9 398 61.8
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 3.7e-115 419.1 348 69.3
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 1.8e-114 416.8 397 64.2
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 2.4e-114 416.4 387 64.6
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 4.1e-114 415.6 387 63.3
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 5.3e-114 415.2 388 62.6
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 2.0e-113 413.3 381 65.6
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 1.3e-112 410.6 382 62.8
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 8.5e-112 407.9 388 61.9
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 1.4e-111 407.1 258 91.1
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 1.9e-111 406.8 388 63.4
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 2.5e-111 406.4 381 63.0
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 9.4e-111 404.4 384 62.0
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 2.1e-110 403.3 372 65.6
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 2.1e-110 403.3 379 64.4
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 3.6e-110 402.5 388 62.1
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 3.6e-110 402.5 378 65.9
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 3.6e-110 402.5 378 65.9
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 4.6e-110 402.1 389 61.7
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 4.6e-110 402.1 399 60.9
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 6.1e-110 401.7 392 59.7
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 1.4e-109 400.6 391 61.6
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 1.8e-109 400.2 376 63.0
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 3.9e-109 399.1 396 60.4
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.9e-109 399.1 334 73.4
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 6.7e-109 398.3 378 65.6
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 1.5e-108 397.1 384 61.5
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 1.3e-107 394.0 378 65.1
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 1.3e-107 394.0 392 61.2
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 2.8e-107 392.9 393 63.6
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 4.8e-107 392.1 385 62.9
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 8.2e-107 391.3 391 61.6
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 2.4e-106 389.8 379 62.3
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 2.4e-106 389.8 379 62.3
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 4.1e-106 389.0 378 63.8
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 4.1e-106 389.0 383 62.7
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 6.9e-106 388.3 388 60.6
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 4.5e-105 385.6 367 62.4
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 8.5e-104 381.3 388 60.6
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 1.4e-103 380.6 379 61.2
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 1.2e-102 377.5 386 60.1
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 3.3e-100 369.4 332 68.4
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 1.3e-99 367.5 379 60.4
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 7.0e-98 361.7 387 59.4
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 5.9e-97 358.6 634 43.7
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 1.0e-96 357.8 346 60.1
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 1.7e-91 340.5 419 52.7
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 6.3e-91 338.6 212 90.1
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 8.2e-91 338.2 376 57.4
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 2.4e-90 336.7 379 59.4
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 5.0e-88 328.9 379 58.0
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 1.3e-83 314.3 401 50.9
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 7.2e-79 298.5 373 51.2
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 4.0e-77 292.7 306 57.5
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 5.7e-76 288.9 373 49.9
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 1.3e-75 287.7 370 50.3
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 3.7e-75 286.2 366 51.4
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 5.4e-74 282.3 262 66.0
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 7.0e-74 282.0 348 52.0
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 4.5e-73 279.3 398 47.2
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 6.6e-72 275.4 317 54.9
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 4.7e-70 269.2 249 69.1
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 2.8e-67 260.0 404 45.0
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 3.7e-67 259.6 247 61.9
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 2.3e-64 250.4 224 68.3
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 5.0e-64 249.2 260 61.5
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 3.1e-61 240.0 220 63.6
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 5.8e-60 235.7 404 43.1
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 1.1e-58 231.5 276 58.0
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 5.0e-56 222.6 275 56.7
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 6.8e-53 212.2 219 57.1
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 8.6e-48 195.3 135 82.2
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.0e-44 184.1 221 56.1
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 2.5e-39 167.2 273 45.1
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 1.2e-38 164.9 134 73.1
RcHm_v2.0_Chr5g0066831 Rosa chinensis HOM05D005278 ORTHO05D006500 8.1e-38 162.2 92 95.7
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 8.9e-37 158.7 127 73.2
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 1.5e-36 157.9 357 36.4
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 5.8e-36 156.0 324 35.5
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 1.2e-33 148.3 129 61.2
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 1.0e-32 145.2 275 40.7
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 6.6e-32 142.5 103 79.6
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 1.1e-31 141.7 109 76.1
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 3.3e-31 140.2 355 33.8
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.3e-31 139.8 103 78.6
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 8.4e-27 125.6 108 64.8
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 2.3e-24 117.5 194 43.8
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 4.3e-23 113.2 68 91.2
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 1.3e-22 111.7 147 51.7
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 2.4e-18 97.4 107 59.8
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 8.7e-16 89.0 95 58.9
BcaB05g22478 Brassica carinata HOM05D005278 ORTHO05D006500 2.4e-13 80.9 189 39.7
RcHm_v2.0_Chr4g0405851 Rosa chinensis HOM05D005278 ORTHO05D006500 1.9e-10 71.2 37 97.3
BcaC06g34357 Brassica carinata HOM05D005278 ORTHO05D016744 2.5e-10 70.9 170 38.2


User provided reference genes

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