Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 4.3e-46 187.6 90 100.0
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 2.3e-44 181.8 87 100.0
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.3e-44 181.8 87 100.0
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.3e-44 181.8 87 100.0
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 5.8e-43 177.2 87 97.7
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.2e-40 169.5 101 85.1
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.2e-40 169.5 101 85.1
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 3.5e-40 167.9 101 84.2
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 3.4e-35 151.4 88 86.4
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 7.5e-27 123.6 87 72.4
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 4.9e-26 120.9 84 72.6
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 5.1e-23 110.9 93 58.1
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 1.2e-21 106.3 93 60.2
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 1.6e-21 105.9 90 58.9
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 2.8e-21 105.1 85 60.0
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 1.8e-20 102.4 90 56.7
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 3.1e-20 101.7 85 57.6
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 4.0e-20 101.3 88 58.0
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 5.2e-20 100.9 88 59.1
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 8.9e-20 100.1 90 56.7
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 8.9e-20 100.1 92 53.3
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 1.5e-19 99.4 93 55.9
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 2.0e-19 99.0 93 57.0
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 2.6e-19 98.6 89 57.3
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 2.6e-19 98.6 90 55.6
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 2.6e-19 98.6 91 54.9
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 3.4e-19 98.2 92 55.4
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 5.8e-19 97.4 83 60.2
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 7.6e-19 97.1 93 54.8
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 1.3e-18 96.3 91 56.0
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 1.7e-18 95.9 87 52.9
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 1.7e-18 95.9 89 58.4
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 2.2e-18 95.5 83 60.2
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.2e-18 95.5 68 66.2
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 2.2e-18 95.5 95 54.7
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 2.9e-18 95.1 86 55.8
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 3.8e-18 94.7 81 59.3
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 4.9e-18 94.4 82 53.7
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 4.9e-18 94.4 88 54.5
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 4.9e-18 94.4 92 56.5
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 6.4e-18 94.0 94 55.3
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 6.4e-18 94.0 94 55.3
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 6.4e-18 94.0 93 53.8
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 6.4e-18 94.0 93 53.8
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 8.4e-18 93.6 90 54.4
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 8.4e-18 93.6 91 51.6
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 8.4e-18 93.6 87 54.0
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 8.4e-18 93.6 93 52.7
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 1.4e-17 92.8 87 52.9
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 1.9e-17 92.4 88 51.1
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 2.4e-17 92.0 87 55.2
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 3.2e-17 91.7 89 53.9
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 3.2e-17 91.7 73 64.4
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 3.2e-17 91.7 93 52.7
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 4.2e-17 91.3 89 53.9
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 4.2e-17 91.3 89 53.9
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 4.2e-17 91.3 88 53.4
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 4.2e-17 91.3 90 52.2
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 4.2e-17 91.3 90 52.2
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 5.4e-17 90.9 89 52.8
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 5.4e-17 90.9 89 51.7
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 5.4e-17 90.9 89 51.7
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 5.4e-17 90.9 90 50.0
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 5.4e-17 90.9 90 53.3
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 5.4e-17 90.9 90 53.3
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 5.4e-17 90.9 94 53.2
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 7.1e-17 90.5 68 64.7
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 9.2e-17 90.1 90 52.2
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 1.2e-16 89.7 90 52.2
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 1.2e-16 89.7 96 51.0
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 1.6e-16 89.4 85 54.1
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 1.6e-16 89.4 89 50.6
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 1.6e-16 89.4 86 54.7
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 1.6e-16 89.4 89 50.6
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 1.6e-16 89.4 89 50.6
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 2.1e-16 89.0 90 52.2
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 2.1e-16 89.0 90 52.2
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 2.1e-16 89.0 90 52.2
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 2.1e-16 89.0 88 53.4
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 2.1e-16 89.0 83 53.0
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 2.7e-16 88.6 87 52.9
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 2.7e-16 88.6 91 51.6
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 2.7e-16 88.6 89 49.4
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 3.5e-16 88.2 89 50.6
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 4.6e-16 87.8 78 59.0
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 4.6e-16 87.8 87 50.6
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 4.6e-16 87.8 80 51.2
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 4.6e-16 87.8 86 53.5
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 6.0e-16 87.4 89 50.6
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 6.0e-16 87.4 89 50.6
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 7.8e-16 87.0 90 52.2
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 7.8e-16 87.0 89 48.3
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 7.8e-16 87.0 87 51.7
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 1.0e-15 86.7 87 50.6
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 1.3e-15 86.3 82 51.2
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 1.3e-15 86.3 83 50.6
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 1.3e-15 86.3 84 46.4
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 1.3e-15 86.3 89 51.7
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 1.3e-15 86.3 98 49.0
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 1.7e-15 85.9 82 48.8
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 1.7e-15 85.9 67 56.7
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 1.7e-15 85.9 87 52.9
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 1.7e-15 85.9 85 51.8
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 2.3e-15 85.5 84 52.4
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 3.9e-15 84.7 81 49.4
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 5.1e-15 84.3 87 49.4
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 5.1e-15 84.3 87 49.4
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 6.6e-15 84.0 88 52.3
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 6.6e-15 84.0 87 49.4
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 6.6e-15 84.0 84 46.4
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 8.7e-15 83.6 83 54.2
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 1.5e-14 82.8 90 47.8
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 1.9e-14 82.4 85 52.9
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 2.5e-14 82.0 82 50.0
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 4.3e-14 81.3 83 51.8
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 4.3e-14 81.3 61 60.7
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 5.6e-14 80.9 65 58.5
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 5.6e-14 80.9 85 47.1
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 7.3e-14 80.5 86 39.5
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 9.6e-14 80.1 91 47.3
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 1.2e-13 79.7 49 71.4
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 1.2e-13 79.7 93 47.3
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 1.6e-13 79.3 85 48.2
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 2.1e-13 79.0 86 38.4
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 3.6e-13 78.2 90 50.0
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 6.2e-13 77.4 95 46.3
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 1.4e-12 76.3 49 65.3
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 3.1e-12 75.1 49 65.3
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 3.1e-12 75.1 79 53.2
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 3.4e-11 71.6 86 44.2
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 7.6e-11 70.5 65 47.7
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 1.3e-10 69.7 92 39.1
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 3.8e-10 68.2 90 42.2
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 6.4e-10 67.4 48 56.2
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 6.4e-10 67.4 48 56.2
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 6.4e-10 67.4 48 56.2
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 1.1e-09 66.6 86 41.9
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 5.4e-09 64.3 44 68.2
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 1.2e-08 63.2 48 54.2
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 2.7e-08 62.0 73 49.3
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 1.7e-07 59.3 67 52.2
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 4.3e-06 54.7 48 45.8


User provided reference genes

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