Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.2e-277 959.1 469 100.0
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 2.4e-265 918.3 465 96.8
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 5.9e-248 860.5 465 91.2
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.7e-247 859.0 465 91.0
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 2.2e-247 858.6 465 91.0
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 8.5e-247 856.7 464 89.7
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 2.1e-221 772.3 463 79.3
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 1.2e-211 740.0 464 76.9
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 4.3e-206 721.5 465 74.2
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 1.7e-202 709.5 463 73.4
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 1.4e-201 706.4 465 73.3
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 2.3e-199 699.1 467 70.7
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 3.3e-198 695.3 465 72.0
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 1.6e-197 693.0 465 72.7
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 3.4e-195 685.3 465 69.9
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 4.4e-195 684.9 464 69.4
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 1.3e-194 683.3 463 70.6
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 8.3e-194 680.6 467 69.8
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 1.3e-191 673.3 465 71.8
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 1.7e-191 672.9 465 69.7
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 2.3e-191 672.5 465 69.0
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 2.3e-191 672.5 469 69.5
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 2.3e-191 672.5 462 69.7
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 1.8e-188 662.9 465 67.3
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 3.1e-188 662.1 464 67.2
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 8.9e-188 660.6 462 69.3
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 1.9e-185 652.9 461 69.0
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 1.9e-185 652.9 484 65.1
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 2.4e-185 652.5 459 68.8
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 7.8e-184 647.5 468 67.5
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 1.0e-183 647.1 459 68.2
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 1.3e-183 646.7 468 66.0
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 4.3e-182 641.7 437 70.3
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 7.3e-182 641.0 449 67.3
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 9.6e-182 640.6 464 65.9
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 1.6e-181 639.8 460 66.3
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 6.2e-181 637.9 469 64.6
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 1.1e-180 637.1 464 66.8
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 1.4e-180 636.7 463 64.8
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 2.4e-180 636.0 459 66.7
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 1.2e-179 633.6 470 65.5
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 1.5e-179 633.3 465 66.2
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 3.4e-179 632.1 464 65.7
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 5.8e-179 631.3 466 65.7
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 5.8e-179 631.3 469 64.8
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 1.4e-177 626.7 466 65.0
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 9.3e-177 624.0 463 64.6
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 2.7e-176 622.5 465 63.0
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 3.5e-176 622.1 462 64.3
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 4.6e-176 621.7 414 72.2
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 4.6e-176 621.7 464 64.7
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 1.0e-175 620.5 467 63.4
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 2.3e-175 619.4 469 65.0
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 5.1e-175 618.2 465 64.1
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 6.6e-175 617.8 468 64.1
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 3.3e-174 615.5 467 63.0
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 3.3e-174 615.5 465 65.4
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 5.6e-174 614.8 465 65.2
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 7.3e-174 614.4 468 62.8
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 9.6e-174 614.0 464 63.1
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 3.6e-173 612.1 466 63.9
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 1.4e-172 610.1 469 63.5
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 2.0e-171 606.3 459 62.1
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 1.9e-169 599.7 459 62.1
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 2.4e-169 599.4 459 61.7
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 3.2e-169 599.0 469 63.1
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 7.1e-169 597.8 469 62.7
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 9.3e-169 597.4 435 65.7
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 1.6e-168 596.7 459 62.5
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 2.1e-168 596.3 459 61.9
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 2.7e-168 595.9 458 62.9
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 2.7e-168 595.9 462 62.1
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 4.6e-168 595.1 463 63.5
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 7.9e-168 594.3 468 61.8
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 1.0e-167 594.0 469 62.3
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 1.0e-167 594.0 469 62.3
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 1.8e-167 593.2 471 62.6
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 3.0e-167 592.4 468 61.1
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 6.7e-167 591.3 469 62.3
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 6.7e-167 591.3 438 64.6
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 1.5e-166 590.1 468 61.1
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 7.4e-166 587.8 417 67.9
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 1.3e-165 587.0 468 60.9
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 2.8e-165 585.9 469 62.0
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 8.1e-165 584.3 472 61.7
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 4.0e-164 582.0 453 63.4
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 2.0e-163 579.7 463 61.8
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 4.5e-163 578.6 437 63.8
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 5.8e-163 578.2 467 60.6
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 4.9e-162 575.1 442 62.0
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 4.9e-162 575.1 465 62.6
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 1.4e-161 573.5 431 62.4
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 1.6e-160 570.1 487 61.8
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 3.9e-159 565.5 437 62.0
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 5.1e-159 565.1 484 57.9
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 1.6e-157 560.1 459 58.4
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 1.7e-154 550.1 468 58.8
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 1.1e-153 547.4 459 59.9
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 1.4e-153 547.0 464 57.8
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 1.9e-153 546.6 472 59.1
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 1.2e-152 543.9 438 62.8
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 2.1e-152 543.1 465 58.7
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 1.3e-149 533.9 468 57.5
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 3.7e-149 532.3 445 59.6
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 1.4e-148 530.4 441 59.4
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 5.3e-148 528.5 464 55.8
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 9.0e-148 527.7 436 58.5
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 2.9e-146 522.7 492 55.5
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 1.9e-145 520.0 468 56.6
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 1.9e-145 520.0 467 58.0
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 6.1e-144 515.0 454 54.2
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 5.1e-143 511.9 344 72.4
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 8.8e-143 511.1 461 55.7
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 2.8e-141 506.1 423 58.4
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 6.1e-136 488.4 388 61.9
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 6.1e-136 488.4 357 63.6
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 1.1e-134 484.2 364 63.2
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 4.1e-132 475.7 446 55.8
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 5.7e-126 455.3 459 52.7
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 2.4e-124 449.9 508 48.0
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 4.2e-121 439.1 501 46.9
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 2.0e-99 367.1 462 44.2
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 7.1e-84 315.5 453 39.5
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 1.2e-83 314.7 428 40.4
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 7.3e-81 305.4 239 66.1
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 5.8e-78 295.8 262 58.0
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 3.0e-74 283.5 189 70.9
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 1.5e-73 281.2 198 67.2
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 4.4e-70 269.6 196 69.4
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 7.6e-70 268.9 196 69.4
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 4.2e-68 263.1 225 58.7
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 3.3e-57 226.9 222 55.0
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 5.3e-55 219.5 421 35.6
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 1.2e-54 218.4 221 52.5
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 1.3e-53 214.9 148 64.2
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 6.2e-48 196.1 315 39.0
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 2.1e-40 171.0 110 68.2
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 2.8e-40 170.6 273 38.8
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 2.1e-35 154.5 178 47.8
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 1.5e-33 148.3 213 41.8
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 8.2e-32 142.5 134 53.7
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 1.8e-31 141.4 193 40.4
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.5e-30 138.3 115 59.1
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 1.0e-29 135.6 213 39.9
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 4.2e-28 130.2 82 74.4
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 7.2e-28 129.4 113 59.3
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 3.6e-27 127.1 93 72.0
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 3.0e-26 124.0 90 65.6
C07p19950 Brassica napus HOM05D004011 ORTHO05D005290 9.7e-25 119.0 217 38.7
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 2.8e-24 117.5 144 45.1
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 8.2e-24 115.9 57 84.2
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 1.1e-23 115.5 144 44.4
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 1.4e-23 115.2 105 52.4
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 2.0e-22 111.3 102 52.9
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 4.5e-22 110.2 76 63.2
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 1.0e-21 109.0 76 63.2
BcaB04g18716 Brassica carinata HOM05D000040 ORTHO05D005442 1.7e-21 108.2 114 50.9
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 6.5e-21 106.3 80 58.8
BcaB07g32391 Brassica carinata HOM05D026641 ORTHO05D027156 7.9e-19 99.4 103 53.4
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 5.1e-18 96.7 63 66.7
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 1.3e-16 92.0 56 69.6
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 2.6e-14 84.3 54 66.7
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 2.5e-12 77.8 116 39.7
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 4.7e-11 73.6 53 60.4
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 6.1e-11 73.2 176 28.4
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 1.8e-10 71.6 53 56.6
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.8e-10 71.6 186 28.0
SMO110G0005 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.1e-09 68.9 176 27.3
BraA07t29103Z Brassica rapa HOM05D001102 ORTHO05D021602 2.8e-08 64.3 40 65.0
CAN.G1697.3 Capsicum annuum HOM05D013442 ORTHO05D016868 3.7e-08 63.9 128 32.0
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.4e-07 61.2 176 25.0
A09p40560 Brassica napus HOM05D004011 ORTHO05D033156 5.3e-07 60.1 50 50.0
Nitab4.5_0002852g0030 Nicotiana tabacum HOM05D001347 ORTHO05D001198 9.1e-07 59.3 76 43.4
A07p13570 Brassica napus HOM05D004011 ORTHO05D006437 3.5e-06 57.4 56 55.4
C05p23620 Brassica napus HOM05D004011 ORTHO05D033156 3.5e-06 57.4 50 50.0
RcHm_v2.0_Chr2g0130381 Rosa chinensis HOM05D000321 ORTHO05D000204 3.5e-06 57.4 39 66.7


User provided reference genes

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