Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G1396 Fragaria x ananassa HOM05D006910 ORTHO05D008937 4.2e-197 691.4 414 100.0
FAN22G1859 Fragaria x ananassa HOM05D006910 ORTHO05D008937 5.3e-184 647.9 437 83.1
FvH4_4g04670 Fragaria vesca HOM05D006910 ORTHO05D008937 2.9e-150 535.8 310 95.5
FAN12G3461 Fragaria x ananassa HOM05D006910 ORTHO05D008937 5.0e-150 535.0 320 85.3
RcHm_v2.0_Chr4g0395481 Rosa chinensis HOM05D006910 ORTHO05D008937 4.9e-129 465.3 312 86.5
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 2.1e-71 273.9 338 56.8
MD16G1226800 Malus domestica HOM05D006910 ORTHO05D008937 1.1e-61 241.5 337 53.4
MD13G1221900 Malus domestica HOM05D006910 ORTHO05D008937 1.4e-59 234.6 329 54.1
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 1.5e-53 214.5 328 51.8
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 2.4e-51 207.2 355 47.0
CiPaw.01G177500 Carya illinoinensis HOM05D006910 ORTHO05D008937 4.1e-51 206.5 251 56.6
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 9.1e-51 205.3 341 48.1
Cpa.g.sc59.4 Carica papaya HOM05D006910 ORTHO05D008937 1.5e-50 204.5 321 48.3
Thecc.04G265400 Theobroma cacao HOM05D006910 ORTHO05D008937 1.0e-49 201.8 318 48.1
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 2.9e-49 200.3 339 49.6
Glyma.20G199800 Glycine max HOM05D006910 ORTHO05D008937 1.4e-48 198.0 308 49.4
QL06p021124 Quercus lobata HOM05D006910 ORTHO05D008937 1.4e-48 198.0 327 49.2
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 1.9e-48 197.6 203 52.2
COL.COLO4_15971 Corchorus olitorius HOM05D006910 ORTHO05D008937 1.0e-46 191.8 325 46.5
Glyma.10G190700 Glycine max HOM05D006910 ORTHO05D008937 1.5e-45 188.0 306 49.3
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 2.6e-45 187.2 352 44.6
Lj5g0027299 Lotus japonicus HOM05D006910 ORTHO05D008937 1.7e-44 184.5 344 45.9
Phvul.011G133545 Phaseolus vulgaris HOM05D006910 ORTHO05D008937 2.8e-44 183.7 318 45.3
Hma1.2p1_0112F.1_g054780 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 4.8e-44 183.0 318 47.5
Nitab4.5_0006344g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 6.3e-44 182.6 333 47.1
VMungo0720G1174 Vigna mungo HOM05D006910 ORTHO05D008937 1.8e-43 181.0 317 44.2
CANSAT78G1020 Cannabis sativa HOM05D006910 ORTHO05D008937 2.4e-43 180.6 317 48.9
DCAR_027350 Daucus carota HOM05D006910 ORTHO05D008937 9.1e-43 178.7 310 46.1
arahy.Tifrunner.gnm1.ann1.YFRU1Z Arachis hypogaea HOM05D006910 ORTHO05D008937 1.2e-42 178.3 352 43.2
Rhsim02G0044100 Rhododendron simsii HOM05D006910 ORTHO05D008937 2.0e-42 177.6 362 45.6
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 5.9e-42 176.0 362 41.7
arahy.Tifrunner.gnm1.ann1.DX8ZNF Arachis hypogaea HOM05D006910 ORTHO05D008937 7.7e-42 175.6 352 43.2
PGR031G1888 Punica granatum HOM05D006910 ORTHO05D008937 1.0e-41 175.3 310 45.8
Potri.010G065400 Populus trichocarpa HOM05D006910 ORTHO05D008937 1.3e-41 174.9 312 45.5
Solyc09g090930.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 2.9e-41 173.7 315 46.0
Sopen09g033910 Solanum pennellii HOM05D006910 ORTHO05D008937 5.0e-41 172.9 315 46.0
Actinidia39932 Actinidia chinensis HOM05D006910 ORTHO05D008937 1.9e-40 171.0 302 48.3
Psat6g131280 Pisum sativum HOM05D006910 ORTHO05D008937 9.4e-40 168.7 323 44.3
Sopen03g001720 Solanum pennellii HOM05D006910 ORTHO05D008937 1.2e-39 168.3 331 45.3
Potri.008G172200 Populus trichocarpa HOM05D006910 ORTHO05D008937 1.6e-39 167.9 310 44.8
Hund20492 Selenicereus undatus HOM05D006910 ORTHO05D008937 2.1e-39 167.5 313 44.7
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 6.1e-39 166.0 329 45.0
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 6.1e-39 166.0 313 47.6
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 8.0e-39 165.6 314 45.9
Nitab4.5_0000355g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.4e-38 164.9 329 42.2
PGSC0003DMG400013458 Solanum tuberosum HOM05D006910 ORTHO05D008937 1.8e-38 164.5 337 45.4
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 5.2e-38 162.9 285 49.1
PGR031G1691 Punica granatum HOM05D006910 ORTHO05D008937 5.2e-38 162.9 302 45.0
PGSC0003DMG400001551 Solanum tuberosum HOM05D006910 ORTHO05D008937 5.2e-38 162.9 316 45.3
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 1.2e-37 161.8 329 45.3
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 1.5e-37 161.4 317 43.5
CAN.G524.13 Capsicum annuum HOM05D006910 ORTHO05D008937 2.0e-37 161.0 321 44.5
CAN.G638.37 Capsicum annuum HOM05D006910 ORTHO05D008937 2.0e-37 161.0 334 45.2
Cc03_g06380 Coffea canephora HOM05D006910 ORTHO05D008937 2.0e-37 161.0 349 42.1
Eucgr.H00126 Eucalyptus grandis HOM05D006910 ORTHO05D008937 2.0e-37 161.0 229 54.6
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 2.0e-37 161.0 345 43.2
Sabra10G0041700 Salix brachista HOM05D006910 ORTHO05D008937 4.4e-37 159.8 294 45.2
Medtr1g073230 Medicago truncatula HOM05D006910 ORTHO05D008937 2.2e-36 157.5 313 43.5
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 5.3e-35 152.9 347 42.7
Lj6C621T3 Lonicera japonica HOM05D006910 ORTHO05D008937 9.1e-35 152.1 324 43.8
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.6e-34 151.4 360 35.6
AUR62015241 Chenopodium quinoa HOM05D006910 ORTHO05D008937 5.9e-34 149.4 308 45.8
Nitab4.5_0000592g0430 Nicotiana tabacum HOM05D006910 ORTHO05D008937 5.9e-34 149.4 359 33.4
Lalb_Chr06g0169541 Lupinus albus HOM05D006910 ORTHO05D008937 1.7e-33 147.9 198 44.9
EL10Ac3g06675 Beta vulgaris HOM05D006910 ORTHO05D008937 2.1e-31 141.0 310 41.6
Migut.G00574 Erythranthe guttata HOM05D006910 ORTHO05D008937 4.7e-31 139.8 313 41.5
Peaxi162Scf01044g00225 Petunia axillaris HOM05D006910 ORTHO05D008937 6.8e-30 136.0 314 42.4
Ah.13g074730 Amaranthus hybridus HOM05D006910 ORTHO05D008937 8.8e-30 135.6 300 42.7
BraA10t42564Z Brassica rapa HOM05D006910 ORTHO05D008937 2.6e-29 134.0 181 44.2
Sc13g0003110 Simmondsia chinensis HOM05D006910 ORTHO05D008937 2.6e-29 134.0 234 48.3
CARHR003870 Cardamine hirsuta HOM05D006910 ORTHO05D008937 4.4e-29 133.3 206 41.3
TWI53G1612 Tripterygium wilfordii HOM05D006910 ORTHO05D008937 7.5e-29 132.5 299 42.1
A10p02950 Brassica napus HOM05D006910 ORTHO05D008937 1.3e-28 131.7 194 41.8
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 4.8e-28 129.8 346 37.0
TPR.G18548 Trifolium pratense HOM05D006910 ORTHO05D008937 6.3e-28 129.4 327 41.0
ECA248G3309 Erigeron canadensis HOM05D006910 ORTHO05D008937 1.1e-27 128.6 193 53.4
CsaV3_3G011640 Cucumis sativus L. HOM05D006910 ORTHO05D008937 1.4e-27 128.3 302 35.1
BolC5t29051H Brassica oleracea HOM05D006910 ORTHO05D008937 3.1e-27 127.1 183 41.0
Sed0015418 Sechium edule HOM05D006910 ORTHO05D008937 7.0e-27 125.9 297 40.4
Sp1g03360 Schrenkiella parvula HOM05D006910 ORTHO05D008937 1.2e-26 125.2 194 39.2
AT1G04530 Arabidopsis thaliana HOM05D006910 ORTHO05D008937 2.7e-26 124.0 197 40.6
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 2.7e-26 124.0 213 42.3
ClCG05G003960 Citrullus lanatus HOM05D006910 ORTHO05D008937 2.7e-26 124.0 309 32.4
Thhalv10008199m.g Eutrema salsugineum HOM05D006910 ORTHO05D008937 2.7e-26 124.0 209 36.4
Aa31LG1G20340 Aethionema arabicum HOM05D006910 ORTHO05D008937 1.0e-25 122.1 199 38.2
MELO3C006372.2 Cucumis melo HOM05D006910 ORTHO05D008937 2.3e-25 120.9 322 38.2
HanXRQChr01g0023021 Helianthus annuus HOM05D006910 ORTHO05D008937 2.3e-25 120.9 192 52.6
C05p02700 Brassica napus HOM05D006910 ORTHO05D008937 2.9e-25 120.6 294 31.6
Carub.0001s0374 Capsella rubella HOM05D006910 ORTHO05D008937 6.5e-25 119.4 158 46.8
Nitab4.5_0002210g0060 Nicotiana tabacum HOM05D006910 ORTHO05D008937 8.6e-25 119.0 286 33.2
SGA_v2.0_scaffold67G22680 Striga asiatica HOM05D006910 ORTHO05D008937 8.6e-25 119.0 304 38.8
AL1G14180 Arabidopsis lyrata HOM05D006910 ORTHO05D008937 1.9e-24 117.9 201 38.3
Lsat_1_v5_gn_6_66101 Lactuca sativa HOM05D006910 ORTHO05D008937 2.5e-24 117.5 170 41.8
Ca_09799_v3 Cicer arietinum L. HOM05D006910 ORTHO05D008937 3.6e-23 113.6 322 38.2
Oeu011215.1 Olea europaea HOM05D006910 ORTHO05D008937 4.7e-23 113.2 303 38.9
THA.LOC104801064 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 4.0e-22 110.2 243 32.5
C08p52150 Brassica napus HOM05D006910 ORTHO05D008937 2.6e-21 107.5 152 40.8
THA.LOC104826095 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 2.6e-21 107.5 254 38.2
SalBow2G0872 Salvia bowleyana HOM05D006910 ORTHO05D008937 7.5e-21 105.9 309 31.4
Lsat_1_v5_gn_1_75580 Lactuca sativa HOM05D006910 ORTHO05D008937 9.8e-21 105.5 185 50.3
BolC8t52749H Brassica oleracea HOM05D006910 ORTHO05D008937 4.9e-20 103.2 152 40.1
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 1.1e-19 102.1 184 40.8
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 1.6e-18 98.2 135 40.0
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 5.9e-18 96.3 185 36.2
AUR62018038 Chenopodium quinoa HOM05D006910 ORTHO05D008937 2.9e-17 94.0 167 53.3
Hma1.2p1_0366F.1_g136940 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 2.3e-14 84.3 176 34.7
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 3.0e-14 84.0 172 38.4
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 5.2e-14 83.2 209 30.6
MBI10_g26041_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 8.9e-14 82.4 148 40.5
unitig_748.g8295 Utricularia gibba HOM05D006910 ORTHO05D008937 2.6e-13 80.9 308 36.0
TAR362G1069 Trochodendron aralioides HOM05D007706 ORTHO05D009593 3.4e-13 80.5 173 39.9
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 4.4e-13 80.1 180 32.8
PSO541G4538 Papaver somniferum HOM05D007706 ORTHO05D009593 5.7e-13 79.7 161 36.0
PSO478G1200 Papaver somniferum HOM05D006910 ORTHO05D009593 2.2e-12 77.8 311 36.7
PSO782G3886 Papaver somniferum HOM05D006910 ORTHO05D009593 2.9e-12 77.4 306 37.3
MBI07_g23229_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 8.3e-12 75.9 152 37.5
MBI02_g19811_MAGBIO Magnolia biondii HOM05D006910 ORTHO05D025782 1.1e-11 75.5 184 32.6
CDE11G0528 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 1.8e-11 74.7 154 36.4
PSO675G7213 Papaver somniferum HOM05D007706 ORTHO05D009593 1.6e-10 71.6 161 33.5
Ah.15g092610 Amaranthus hybridus HOM05D007706 ORTHO05D009593 7.8e-10 69.3 200 27.0
ATR0787G077 Amborella trichopoda HOM05D007706 ORTHO05D009593 1.0e-09 68.9 181 34.8
Hma1.2p1_1930F.1_g307940 Hydrangea macrophylla HOM05D007706 ORTHO05D009593 1.3e-09 68.6 181 35.4
Nitab4.5_0000209g0150 Nicotiana tabacum HOM05D001903 ORTHO05D001847 5.0e-09 66.6 86 44.2
CSS0007043 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 3.3e-08 63.9 45 60.0
Os04g0496700 Oryza sativa ssp. japonica HOM05D001903 ORTHO05D001847 3.3e-08 63.9 77 42.9
Nitab4.5_0008073g0040 Nicotiana tabacum HOM05D009844 ORTHO05D007252 7.3e-08 62.8 46 58.7
Rhsim03G0248500 Rhododendron simsii HOM05D001903 ORTHO05D001847 9.5e-08 62.4 74 44.6
FAN27G2030 Fragaria x ananassa HOM05D007706 ORTHO05D009593 2.1e-07 61.2 157 36.3
Ca_08742_v3 Cicer arietinum L. HOM05D007706 ORTHO05D009593 2.8e-07 60.8 90 45.6
SMO118G0200 Selaginella moellendorffii HOM05D006910 ORTHO05D008937 2.8e-07 60.8 61 45.9
Hund26517 Selenicereus undatus HOM05D001903 ORTHO05D001847 2.8e-07 60.8 74 39.2
Cfa010644 Carpinus fangiana HOM05D001903 ORTHO05D001847 3.6e-07 60.5 72 41.7
EL10Ac2g04227 Beta vulgaris HOM05D001903 ORTHO05D001847 6.2e-07 59.7 76 39.5
Sabra13G0020900 Salix brachista HOM05D000307 ORTHO05D000166 2.3e-06 57.8 45 60.0
SEGI_24294 Sequoiadendron giganteum HOM05D006910 ORTHO05D008937 2.3e-06 57.8 44 56.8
Actinidia11375 Actinidia chinensis HOM05D006910 ORTHO05D008937 5.2e-06 56.6 83 67.5


User provided reference genes

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