Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 9.9e-253 876.3 447 100.0
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 7.9e-234 813.5 417 98.1
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.3e-233 812.8 417 98.1
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.5e-232 809.3 417 97.8
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 1.3e-223 779.6 411 94.6
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 3.1e-214 748.4 391 95.9
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 1.2e-202 709.9 410 84.4
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 5.7e-200 701.0 408 83.3
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 8.2e-199 697.2 405 83.2
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 7.7e-197 690.6 408 82.1
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 4.2e-195 684.9 407 80.6
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 2.1e-194 682.6 408 81.6
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 6.1e-194 681.0 406 81.0
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 1.8e-193 679.5 407 80.1
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 9.7e-192 673.7 408 79.2
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 9.7e-192 673.7 407 79.1
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 2.8e-191 672.2 403 79.2
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 2.8e-191 672.2 401 80.5
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 2.4e-190 669.1 406 79.6
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 9.1e-190 667.2 408 78.7
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 5.9e-189 664.5 406 79.1
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 1.0e-188 663.7 405 78.5
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 1.0e-188 663.7 406 78.6
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 1.3e-188 663.3 407 78.4
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 1.7e-188 662.9 408 77.2
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 5.0e-188 661.4 407 77.1
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 1.9e-187 659.4 406 77.1
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 1.9e-187 659.4 408 78.4
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 4.2e-187 658.3 408 77.9
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 1.2e-186 656.8 407 77.6
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 1.6e-186 656.4 406 78.6
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 1.0e-185 653.7 408 77.5
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 1.4e-185 653.3 408 77.7
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 8.8e-185 650.6 408 77.5
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 8.8e-185 650.6 409 78.7
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 1.2e-184 650.2 410 76.8
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 1.5e-184 649.8 406 79.3
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 2.6e-184 649.0 409 77.3
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 7.5e-184 647.5 404 77.2
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 2.2e-183 646.0 416 74.5
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 2.2e-183 646.0 405 76.8
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 2.8e-183 645.6 408 75.7
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 2.8e-183 645.6 406 75.1
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 3.7e-183 645.2 407 76.7
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 8.2e-183 644.0 406 77.1
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 8.2e-183 644.0 405 77.0
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 1.4e-182 643.3 408 75.7
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 1.8e-182 642.9 408 75.7
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 1.8e-182 642.9 406 76.1
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 7.0e-182 641.0 406 77.3
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 2.7e-181 639.0 406 75.4
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 3.5e-181 638.6 406 74.6
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 7.7e-181 637.5 397 77.3
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 1.0e-180 637.1 406 74.6
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 3.8e-180 635.2 407 74.9
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 3.8e-180 635.2 406 75.9
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 6.5e-180 634.4 408 75.0
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 1.5e-179 633.3 406 75.4
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 1.5e-179 633.3 406 74.6
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 3.2e-179 632.1 407 74.2
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 4.2e-179 631.7 408 74.3
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 1.8e-177 626.3 403 73.2
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 1.8e-177 626.3 407 73.0
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 2.3e-177 625.9 406 73.9
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 4.0e-177 625.2 400 74.0
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 8.8e-177 624.0 406 73.4
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 1.7e-175 619.8 401 73.3
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 1.4e-174 616.7 406 72.4
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 1.4e-174 616.7 405 73.3
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 1.4e-174 616.7 407 72.7
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 3.1e-174 615.5 409 72.4
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 7.0e-174 614.4 407 71.7
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 9.1e-174 614.0 407 74.9
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 3.5e-173 612.1 414 72.5
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 4.5e-173 611.7 407 71.0
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 7.7e-173 610.9 407 71.3
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 1.0e-172 610.5 409 74.3
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 1.0e-172 610.5 407 70.8
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 2.3e-172 609.4 407 71.5
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 2.3e-172 609.4 376 77.1
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 5.0e-172 608.2 409 70.2
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 8.6e-172 607.4 402 71.4
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 1.9e-171 606.3 404 71.5
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 3.6e-170 602.1 405 69.9
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 3.6e-170 602.1 405 72.6
RcHm_v2.0_Chr2g0139541 Rosa chinensis HOM05D005225 ORTHO05D006830 3.6e-170 602.1 322 94.7
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 8.0e-170 600.9 403 72.2
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 1.0e-169 600.5 405 69.4
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 8.9e-169 597.4 405 69.6
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 8.9e-169 597.4 405 69.6
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 8.9e-169 597.4 405 69.6
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 5.7e-168 594.7 407 68.1
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 1.1e-166 590.5 406 70.4
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 5.4e-166 588.2 405 71.9
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 1.6e-165 586.6 381 73.0
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 2.9e-164 582.4 416 67.8
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 3.3e-163 578.9 410 70.5
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 5.6e-163 578.2 406 70.7
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 1.2e-160 570.5 407 67.8
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 1.2e-160 570.5 407 69.0
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 1.2e-160 570.5 416 65.9
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 2.0e-160 569.7 409 68.2
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 5.8e-160 568.2 405 66.9
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 2.4e-158 562.8 415 64.6
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 2.7e-157 559.3 408 66.7
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 1.4e-153 547.0 414 62.3
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 5.2e-153 545.0 409 68.0
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 2.7e-149 532.7 408 63.5
Glyma.01G062200 Glycine max HOM05D005225 ORTHO05D006830 5.1e-148 528.5 345 76.2
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 2.3e-145 519.6 400 64.2
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 8.9e-145 517.7 316 77.8
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 2.0e-144 516.5 401 64.6
Nn2g15478 Nelumbo nucifera HOM05D005225 ORTHO05D006830 3.4e-144 515.8 328 75.6
AUR62007898 Chenopodium quinoa HOM05D005225 ORTHO05D006830 2.4e-142 509.6 338 72.5
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 7.3e-139 498.0 405 65.4
Phvul.007G262101 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 6.9e-129 464.9 293 78.8
Phvul.001G131450 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 1.5e-128 463.8 296 77.4
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 5.8e-128 461.8 410 54.9
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 2.4e-126 456.4 405 56.0
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 1.3e-122 444.1 404 55.2
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 6.2e-122 441.8 389 56.3
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 2.6e-112 409.8 380 56.8
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 1.2e-109 401.0 407 49.4
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 2.0e-96 357.1 413 45.8
CDE04G0587 Ceratophyllum demersum HOM05D005225 ORTHO05D006830 2.9e-87 326.6 208 73.6
HanXRQChr04g0120931 Helianthus annuus HOM05D005225 ORTHO05D006830 1.6e-85 320.9 215 70.7
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 8.5e-79 298.5 470 40.4
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 4.4e-75 286.2 546 35.5
PRCOL_00003253 Prasinoderma coloniale HOM05D005225 ORTHO05D006830 2.0e-72 277.3 441 38.3
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 1.0e-68 265.0 392 42.9
LjContig00272g0016968 Lotus japonicus HOM05D005225 ORTHO05D006830 2.3e-52 210.7 136 72.8
Nn4g23480 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.7e-47 194.5 112 79.5
Actinidia16153 Actinidia chinensis HOM05D005225 ORTHO05D006830 4.0e-44 183.3 307 40.7
SGA_v2.0_scaffold16G07808 Striga asiatica HOM05D005225 ORTHO05D006830 4.1e-41 173.3 219 45.7
Nn4g23481 Nelumbo nucifera HOM05D005225 ORTHO05D006830 8.6e-39 165.6 108 77.8
TAR371G0727 Trochodendron aralioides HOM05D005225 ORTHO05D006830 4.1e-33 146.7 243 39.9
SGA_v2.0_scaffold16G07809 Striga asiatica HOM05D005225 ORTHO05D048239 1.2e-32 145.2 117 59.8
HanXRQChr04g0120941 Helianthus annuus HOM05D005225 ORTHO05D048239 4.3e-30 136.7 87 72.4
RcHm_v2.0_Chr2g0139531 Rosa chinensis HOM05D005225 ORTHO05D006830 3.6e-29 133.7 74 83.8
QL06p011620 Quercus lobata HOM05D005225 ORTHO05D006830 2.8e-21 107.5 68 82.4
CARHR062340 Cardamine hirsuta HOM05D005225 ORTHO05D006830 2.6e-19 100.9 69 65.2
Medtr0076s0050 Medicago truncatula HOM05D005225 ORTHO05D265034 2.9e-18 97.4 88 56.8


User provided reference genes

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