Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G1261 Fragaria x ananassa HOM05D003602 ORTHO05D004808 1.6e-310 1068.5 536 100.0
RcHm_v2.0_Chr1g0360031 Rosa chinensis HOM05D003602 ORTHO05D004808 4.9e-166 588.6 527 61.5
FvH4_7g16830 Fragaria vesca HOM05D003602 ORTHO05D004808 1.4e-160 570.5 528 59.5
FAN06G4341 Fragaria x ananassa HOM05D003602 ORTHO05D004808 4.0e-160 568.9 528 59.3
FAN10G3025 Fragaria x ananassa HOM05D003602 ORTHO05D004808 6.9e-160 568.2 528 59.5
FAN10G2704 Fragaria x ananassa HOM05D003602 ORTHO05D004808 1.5e-159 567.0 528 59.3
FAN01G1925 Fragaria x ananassa HOM05D003602 ORTHO05D004808 2.6e-159 566.2 528 59.3
FAN06G1715 Fragaria x ananassa HOM05D003602 ORTHO05D004808 4.5e-159 565.5 528 59.1
FAN03G2718 Fragaria x ananassa HOM05D003602 ORTHO05D004808 1.1e-157 560.8 528 58.9
Prupe.2G190300 Prunus persica HOM05D003602 ORTHO05D004808 3.5e-156 555.8 525 58.1
MD01G1083100 Malus domestica HOM05D003602 ORTHO05D004808 9.0e-152 541.2 527 56.2
Duzib133G0673 Durio zibethinus HOM05D003602 ORTHO05D004808 1.5e-143 513.8 530 54.0
Gohir.A07G137000 Gossypium hirsutum HOM05D003602 ORTHO05D004808 2.0e-143 513.5 527 54.1
Gohir.D07G142200 Gossypium hirsutum HOM05D003602 ORTHO05D004808 3.4e-143 512.7 527 54.3
THA.LOC104817368 Tarenaya hassleriana HOM05D003602 ORTHO05D004808 4.5e-143 512.3 527 53.1
Gorai.001G154000 Gossypium raimondii HOM05D003602 ORTHO05D004808 5.9e-143 511.9 527 53.9
Duzib138G1559 Durio zibethinus HOM05D003602 ORTHO05D004808 7.7e-143 511.5 530 53.6
CsaV3_3G007970 Cucumis sativus L. HOM05D003602 ORTHO05D004808 1.0e-142 511.1 541 53.4
QL08p045638 Quercus lobata HOM05D003602 ORTHO05D004808 1.0e-142 511.1 538 53.9
MELO3C006015.2 Cucumis melo HOM05D003602 ORTHO05D004808 1.3e-142 510.8 541 53.4
ClCG05G000750 Citrullus lanatus HOM05D003602 ORTHO05D004808 2.2e-142 510.0 541 53.8
PGR042G2389 Punica granatum HOM05D003602 ORTHO05D004808 3.8e-142 509.2 533 54.2
Sed0018077 Sechium edule HOM05D003602 ORTHO05D004808 9.4e-141 504.6 541 53.4
Sed0022447 Sechium edule HOM05D003602 ORTHO05D004808 3.6e-140 502.7 538 53.2
COL.COLO4_06273 Corchorus olitorius HOM05D003602 ORTHO05D004808 4.6e-140 502.3 530 53.0
Cfa003788 Carpinus fangiana HOM05D003602 ORTHO05D004808 6.1e-140 501.9 538 53.0
Thecc.01G340800 Theobroma cacao HOM05D003602 ORTHO05D004808 7.9e-140 501.5 530 53.8
Haze_15672 Corylus avellana HOM05D003602 ORTHO05D004808 1.0e-139 501.1 538 52.6
QL11p045606 Quercus lobata HOM05D003602 ORTHO05D004808 2.3e-139 500.0 538 53.0
Thhalv10001293m.g Eutrema salsugineum HOM05D003602 ORTHO05D004808 5.1e-139 498.8 523 51.6
CANSAT56G2221 Cannabis sativa HOM05D003602 ORTHO05D004808 8.8e-139 498.0 526 54.6
Sp4g28560 Schrenkiella parvula HOM05D003602 ORTHO05D004808 1.5e-138 497.3 523 51.8
Eucgr.D02383 Eucalyptus grandis HOM05D003602 ORTHO05D004808 2.0e-138 496.9 528 52.7
TWI59G0599 Tripterygium wilfordii HOM05D003602 ORTHO05D004808 2.0e-138 496.9 527 52.8
Manes.01G245400 Manihot esculenta HOM05D003602 ORTHO05D004808 5.7e-138 495.4 530 52.1
A05p01280 Brassica napus HOM05D003602 ORTHO05D004808 7.4e-138 495.0 523 51.6
BraA05t19126Z Brassica rapa HOM05D003602 ORTHO05D004808 7.4e-138 495.0 523 51.6
Ciclev10018709m.g Citrus clementina HOM05D003602 ORTHO05D004808 9.7e-138 494.6 524 52.5
Manes.05G021800 Manihot esculenta HOM05D003602 ORTHO05D004808 9.7e-138 494.6 530 52.3
Potri.014G100000 Populus trichocarpa HOM05D003602 ORTHO05D004808 9.7e-138 494.6 525 53.3
CARHR141850 Cardamine hirsuta HOM05D003602 ORTHO05D004808 1.3e-137 494.2 527 51.4
AL4G45940 Arabidopsis lyrata HOM05D003602 ORTHO05D004808 1.7e-137 493.8 528 51.1
CiPaw.01G077200 Carya illinoinensis HOM05D003602 ORTHO05D004808 2.8e-137 493.0 538 52.0
Potri.002G172700 Populus trichocarpa HOM05D003602 ORTHO05D004808 4.8e-137 492.3 525 53.1
AT2G46520 Arabidopsis thaliana HOM05D003602 ORTHO05D004808 1.8e-136 490.3 528 50.8
TPR.G20226 Trifolium pratense HOM05D003602 ORTHO05D004808 3.1e-136 489.6 528 52.1
Carub.0004s2923 Capsella rubella HOM05D003602 ORTHO05D004808 4.1e-136 489.2 531 50.7
Lalb_Chr17g0342751 Lupinus albus HOM05D003602 ORTHO05D004808 9.1e-136 488.0 528 52.7
arahy.Tifrunner.gnm1.ann1.100NT6 Arachis hypogaea HOM05D003602 ORTHO05D004808 2.0e-135 486.9 528 52.5
Lalb_Chr04g0254381 Lupinus albus HOM05D003602 ORTHO05D004808 2.0e-135 486.9 528 52.3
arahy.Tifrunner.gnm1.ann1.M38EY0 Arachis hypogaea HOM05D003602 ORTHO05D004808 2.6e-135 486.5 528 52.3
Sabra14G0073400 Salix brachista HOM05D003602 ORTHO05D004808 1.0e-134 484.6 525 52.8
Sabra02G0140500 Salix brachista HOM05D003602 ORTHO05D004808 5.0e-134 482.3 525 52.0
Dinv34217 Davidia involucrata HOM05D003602 ORTHO05D004808 1.4e-133 480.7 528 50.0
CSS0032390 Camellia sinensis var. sinensis HOM05D003602 ORTHO05D004808 4.2e-133 479.2 528 51.5
Actinidia17298 Actinidia chinensis HOM05D003602 ORTHO05D004808 9.4e-133 478.0 526 51.3
Glyma.16G023700 Glycine max HOM05D003602 ORTHO05D004808 1.2e-132 477.6 528 51.1
Medtr8g027450 Medicago truncatula HOM05D003602 ORTHO05D004808 2.1e-132 476.9 525 51.0
Aqoxy7G00067 Aquilegia oxysepala HOM05D003602 ORTHO05D004808 3.6e-132 476.1 530 50.2
Lj7P499T29 Lonicera japonica HOM05D003602 ORTHO05D004808 1.0e-131 474.6 518 51.2
Glyma.07G054900 Glycine max HOM05D003602 ORTHO05D004808 1.4e-131 474.2 528 51.3
CSS0048042 Camellia sinensis var. sinensis HOM05D003602 ORTHO05D004808 2.3e-131 473.4 526 50.4
vmacro07844 Vaccinium macrocarpon HOM05D003602 ORTHO05D004808 3.0e-131 473.0 528 51.1
Nn1g00272 Nelumbo nucifera HOM05D003602 ORTHO05D004808 3.9e-131 472.6 528 50.6
Peaxi162Scf00345g00023 Petunia axillaris HOM05D003602 ORTHO05D004808 8.8e-131 471.5 528 50.4
Rhsim03G0025100 Rhododendron simsii HOM05D003602 ORTHO05D004808 1.5e-130 470.7 528 50.2
Hma1.2p1_0390F.1_g142640 Hydrangea macrophylla HOM05D003602 ORTHO05D004808 3.3e-130 469.5 526 50.6
VMungo0540G0209 Vigna mungo HOM05D003602 ORTHO05D004808 3.3e-130 469.5 527 50.7
Phvul.006G114200 Phaseolus vulgaris HOM05D003602 ORTHO05D004808 4.4e-130 469.2 527 51.4
Nitab4.5_0001763g0060 Nicotiana tabacum HOM05D003602 ORTHO05D004808 5.7e-130 468.8 529 50.9
Sopen01g039780 Solanum pennellii HOM05D003602 ORTHO05D004808 7.4e-130 468.4 528 50.0
VMungo0540G0473 Vigna mungo HOM05D003602 ORTHO05D004808 1.3e-129 467.6 527 51.0
Lj3g0012795 Lotus japonicus HOM05D003602 ORTHO05D004808 1.7e-129 467.2 528 50.6
Nitab4.5_0002614g0030 Nicotiana tabacum HOM05D003602 ORTHO05D004808 1.7e-129 467.2 528 50.4
DCAR_008665 Daucus carota HOM05D003602 ORTHO05D004808 2.2e-129 466.8 531 49.0
PGSC0003DMG401000117 Solanum tuberosum HOM05D003602 ORTHO05D004808 2.8e-129 466.5 528 49.6
Solyc01g096060.4 Solanum lycopersicum HOM05D003602 ORTHO05D004808 6.3e-129 465.3 528 49.8
Migut.N01537 Erythranthe guttata HOM05D003602 ORTHO05D004808 1.1e-128 464.5 526 49.6
MSTRG.17352 Avicennia marina HOM05D003602 ORTHO05D004808 3.1e-128 463.0 528 49.2
Migut.B01885 Erythranthe guttata HOM05D003602 ORTHO05D004808 9.1e-128 461.5 528 48.3
Phvul.006G114111 Phaseolus vulgaris HOM05D003602 ORTHO05D004808 1.2e-127 461.1 527 50.5
CAN.G1415.23 Capsicum annuum HOM05D003602 ORTHO05D004808 2.6e-127 459.9 528 50.2
SGA_v2.0_scaffold22G09976 Striga asiatica HOM05D003602 ORTHO05D004808 3.8e-126 456.1 528 48.7
SGA_v2.0_scaffold22G09979 Striga asiatica HOM05D003602 ORTHO05D004808 3.8e-126 456.1 528 48.7
Cc02_g39500 Coffea canephora HOM05D003602 ORTHO05D004808 5.0e-126 455.7 541 49.2
Oeu007881.3 Olea europaea HOM05D003602 ORTHO05D004808 8.5e-126 454.9 525 49.1
Oeu043228.1 Olea europaea HOM05D003602 ORTHO05D004808 1.5e-125 454.1 528 48.3
CDE10G0721 Ceratophyllum demersum HOM05D003602 ORTHO05D004808 5.5e-125 452.2 508 48.6
TAR375G0067 Trochodendron aralioides HOM05D003602 ORTHO05D004808 5.5e-125 452.2 525 48.6
Lsat_1_v5_gn_7_961 Lactuca sativa HOM05D003602 ORTHO05D004808 9.4e-125 451.4 528 48.7
Ca_23524_v3 Cicer arietinum L. HOM05D003602 ORTHO05D004808 4.7e-124 449.1 528 49.6
HanXRQChr04g0120491 Helianthus annuus HOM05D003602 ORTHO05D004808 6.1e-124 448.7 525 47.4
CARHR195690 Cardamine hirsuta HOM05D003602 ORTHO05D004808 8.0e-124 448.4 528 47.9
BcaC02g12682 Brassica carinata HOM05D003602 ORTHO05D004808 6.7e-123 445.3 452 53.5
Sc02g0002440 Simmondsia chinensis HOM05D003602 ORTHO05D004808 1.5e-122 444.1 524 47.9
Sc02g0002490 Simmondsia chinensis HOM05D003602 ORTHO05D004808 1.5e-122 444.1 524 47.9
C04p01410 Brassica napus HOM05D003602 ORTHO05D004808 7.5e-122 441.8 523 47.8
BolC4t21795H Brassica oleracea HOM05D003602 ORTHO05D004808 9.7e-122 441.4 518 48.1
SEGI_02600 Sequoiadendron giganteum HOM05D003602 ORTHO05D004808 1.7e-121 440.7 527 46.7
ECA236G0047 Erigeron canadensis HOM05D003602 ORTHO05D004808 2.2e-121 440.3 525 47.2
Aqoxy4G00207 Aquilegia oxysepala HOM05D003602 ORTHO05D004808 6.3e-121 438.7 525 47.2
Aa31LG1G27870 Aethionema arabicum HOM05D003602 ORTHO05D004808 8.2e-121 438.3 527 47.8
unitig_736.g22809 Utricularia gibba HOM05D003602 ORTHO05D004808 1.4e-120 437.6 528 46.6
MD07G1151800 Malus domestica HOM05D003602 ORTHO05D004808 1.2e-119 434.5 394 59.1
ATR0605G321 Amborella trichopoda HOM05D003602 ORTHO05D004808 8.5e-118 428.3 525 45.7
Hund27357 Selenicereus undatus HOM05D003602 ORTHO05D004808 6.1e-116 422.2 528 45.6
Medtr6g051660 Medicago truncatula HOM05D003602 ORTHO05D004808 2.3e-115 420.2 496 47.8
AUR62020311 Chenopodium quinoa HOM05D003602 ORTHO05D004808 4.0e-115 419.5 522 45.6
PSO384G3294 Papaver somniferum HOM05D003602 ORTHO05D004808 4.0e-115 419.5 528 46.4
PSO135G0828 Papaver somniferum HOM05D003602 ORTHO05D004808 5.2e-115 419.1 528 46.4
Ah.03g136880 Amaranthus hybridus HOM05D003602 ORTHO05D004808 3.7e-113 412.9 526 44.3
Carub.0001s3638 Capsella rubella HOM05D003602 ORTHO05D004808 3.7e-113 412.9 522 46.4
SHI11330 Sapria himalayana HOM05D003602 ORTHO05D004808 1.1e-112 411.4 520 42.7
SalBow2G0371 Salvia bowleyana HOM05D003602 ORTHO05D004808 1.4e-112 411.0 527 46.1
Ah.14g081150 Amaranthus hybridus HOM05D003602 ORTHO05D004808 5.9e-111 405.6 526 43.7
EL10Ac6g13271 Beta vulgaris HOM05D003602 ORTHO05D004808 7.7e-111 405.2 525 44.2
Dinv32601 Davidia involucrata HOM05D003602 ORTHO05D004808 7.7e-111 405.2 524 46.2
BcaC03g13954 Brassica carinata HOM05D003602 ORTHO05D004808 1.3e-110 404.4 529 45.6
A02p08760 Brassica napus HOM05D003602 ORTHO05D004808 9.5e-109 398.3 524 45.8
Actinidia39220 Actinidia chinensis HOM05D003602 ORTHO05D004808 2.8e-108 396.7 523 45.5
Psat4g162200 Pisum sativum HOM05D003602 ORTHO05D004808 3.6e-108 396.4 418 51.9
Mapoly0156s0024 Marchantia polymorpha HOM05D003602 ORTHO05D004808 8.0e-108 395.2 524 42.6
CARHR193560 Cardamine hirsuta HOM05D003602 ORTHO05D004808 4.0e-107 392.9 524 44.3
Pp3c16_3270 Physcomitrium patens HOM05D003602 ORTHO05D004808 2.8e-105 386.7 528 41.9
BraA02t05946Z Brassica rapa HOM05D003602 ORTHO05D004808 9.2e-104 381.7 521 45.5
Pp3c27_3380 Physcomitrium patens HOM05D003602 ORTHO05D004808 2.7e-103 380.2 531 40.9
HPP92_002938 Vanilla planifolia HOM05D003602 ORTHO05D004808 2.1e-100 370.5 536 41.4
CDE10G0625 Ceratophyllum demersum HOM05D003602 ORTHO05D004808 3.0e-99 366.7 488 45.1
EL10Ac8g18571 Beta vulgaris HOM05D003602 ORTHO05D004808 8.9e-99 365.2 533 41.8
GSVIVG01027164001 Vitis vinifera HOM05D003602 ORTHO05D004808 3.4e-98 363.2 348 57.2
SMO364G0669 Selaginella moellendorffii HOM05D003602 ORTHO05D004808 2.9e-97 360.1 528 39.4
CBR_g50023 Chara braunii HOM05D003602 ORTHO05D004808 7.8e-95 352.1 521 39.9
AagrBONN_evm.TU.Sc2ySwM_228.4084 Anthoceros agrestis HOM05D003602 ORTHO05D004808 3.3e-93 346.7 478 41.4
TPR.G33518 Trifolium pratense HOM05D003602 ORTHO05D004808 7.3e-93 345.5 506 42.3
TAR371G1016 Trochodendron aralioides HOM05D003602 ORTHO05D004808 6.2e-92 342.4 350 53.7
Zm00001eb055080 Zea mays HOM05D003602 ORTHO05D004808 3.1e-91 340.1 514 39.1
Zm00001eb216140 Zea mays HOM05D003602 ORTHO05D004808 5.8e-90 335.9 536 38.6
AagrBONN_evm.TU.Sc2ySwM_368.664__665 Anthoceros agrestis HOM05D003602 ORTHO05D004808 1.4e-83 314.7 479 39.0
SMO358G0230 Selaginella moellendorffii HOM05D003602 ORTHO05D004808 1.2e-79 301.6 510 37.5
MCO04G210 Micromonas commoda HOM05D003602 ORTHO05D004808 9.9e-74 282.0 514 34.8
PRCOL_00001712 Prasinoderma coloniale HOM05D003602 ORTHO05D004808 1.1e-72 278.5 535 32.9
Cre16.g685901 Chlamydomonas reinhardtii HOM05D003602 ORTHO05D004808 2.1e-71 274.2 527 31.9
AUR62011778 Chenopodium quinoa HOM05D003602 ORTHO05D004808 7.8e-71 272.3 435 39.1
Thhalv10019782m.g Eutrema salsugineum HOM05D003602 ORTHO05D004808 2.4e-64 250.8 524 34.9
QL06p027270 Quercus lobata HOM05D004207 ORTHO05D005188 3.9e-62 243.4 217 59.0
Lsat_1_v5_gn_2_68180 Lactuca sativa HOM05D003602 ORTHO05D004808 6.6e-62 242.7 248 52.0
QL10p039122 Quercus lobata HOM05D003602 ORTHO05D004808 4.9e-57 226.5 221 53.4
QL04p077689 Quercus lobata HOM05D003602 ORTHO05D002925 9.3e-56 222.2 280 47.9
Os01g0235400 Oryza sativa ssp. japonica HOM05D003602 ORTHO05D004808 3.1e-51 207.2 320 40.6
QL02p042411 Quercus lobata HOM05D002707 ORTHO05D002925 4.3e-45 186.8 180 56.1
BcaC03g15021 Brassica carinata HOM05D003602 ORTHO05D018547 1.6e-44 184.9 397 35.8
BcaB03g13365 Brassica carinata HOM05D003602 ORTHO05D004808 3.1e-43 180.6 313 38.0
Cfa023442 Carpinus fangiana HOM05D003602 ORTHO05D004808 4.0e-43 180.3 533 25.9
Psat4g156360 Pisum sativum HOM05D003602 ORTHO05D004808 1.0e-41 175.6 254 40.6
BolC2t07236H Brassica oleracea HOM05D003602 ORTHO05D004808 2.5e-37 161.0 201 44.3
ECA240G0654 Erigeron canadensis HOM05D003602 ORTHO05D004808 4.3e-37 160.2 306 37.3
SalBow3G0266 Salvia bowleyana HOM05D003602 ORTHO05D004808 4.8e-36 156.8 208 42.8
Lj9C388G20 Lonicera japonica HOM05D003602 ORTHO05D004808 1.4e-35 155.2 192 47.9
BolC2t07237H Brassica oleracea HOM05D003602 ORTHO05D004808 4.1e-35 153.7 276 38.0
QL05p088277 Quercus lobata HOM05D003602 ORTHO05D007458 8.8e-30 136.0 116 58.6
BolC2t08632H Brassica oleracea HOM05D003602 ORTHO05D004808 4.3e-29 133.7 212 40.1
FAN12G2779 Fragaria x ananassa HOM05D003602 ORTHO05D004808 2.5e-24 117.9 83 71.1
Lj9A388T38 Lonicera japonica HOM05D003602 ORTHO05D004808 3.7e-20 104.0 168 39.9
Cpa.g.sc18.79 Carica papaya HOM05D003602 ORTHO05D004808 2.4e-19 101.3 104 52.9
AL350U10020 Arabidopsis lyrata HOM05D003602 ORTHO05D004808 6.7e-14 83.2 294 24.1
Lsat_1_v5_gn_2_108301 Lactuca sativa HOM05D003602 ORTHO05D004808 3.1e-11 74.3 203 30.0
Dinv07459 Davidia involucrata HOM05D003602 ORTHO05D004808 7.0e-11 73.2 55 58.2
Psat0s1548g0040 Pisum sativum HOM05D000278 ORTHO05D015036 4.5e-10 70.5 64 54.7
SEGI_28185 Sequoiadendron giganteum HOM05D000644 ORTHO05D000504 7.7e-10 69.7 97 38.1
Oeu004956.1 Olea europaea HOM05D003602 ORTHO05D004808 4.0e-06 57.4 124 33.9


User provided reference genes

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