Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 0.0e+00 1563.5 788 100.0
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 0.0e+00 1373.2 749 93.7
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 0.0e+00 1316.2 749 91.2
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 0.0e+00 1228.4 749 86.8
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 0.0e+00 1209.1 773 84.0
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 3.6e-306 1054.7 752 75.0
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 2.6e-208 729.6 752 55.5
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 1.9e-182 643.7 682 54.1
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 6.2e-157 558.9 749 44.7
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 2.7e-144 516.9 756 43.4
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 1.1e-142 511.5 754 43.0
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 6.2e-141 505.8 687 45.4
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 1.5e-139 501.1 800 40.9
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 2.1e-136 490.7 753 42.0
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 2.6e-131 473.8 680 42.5
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 3.2e-129 466.8 747 39.5
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 1.3e-127 461.5 752 39.4
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 6.6e-127 459.1 754 39.8
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 6.6e-127 459.1 749 39.9
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 2.5e-126 457.2 774 39.0
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 7.3e-126 455.7 759 40.1
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 2.8e-125 453.8 857 35.9
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 3.6e-125 453.4 760 38.7
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 2.9e-122 443.7 753 39.2
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 4.2e-121 439.9 749 39.3
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 5.4e-121 439.5 702 40.2
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 3.5e-120 436.8 783 38.4
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 1.0e-119 435.3 753 38.4
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 3.9e-119 433.3 744 37.5
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 4.3e-118 429.9 744 39.1
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 7.4e-118 429.1 775 36.4
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 1.8e-116 424.5 750 36.5
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 2.4e-116 424.1 708 39.5
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 3.1e-116 423.7 749 38.7
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 1.5e-115 421.4 790 37.5
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 2.2e-114 417.5 774 35.3
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 1.0e-111 408.7 747 36.4
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 1.1e-110 405.2 748 39.2
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 7.4e-110 402.5 757 37.8
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 3.1e-108 397.1 726 36.9
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 1.2e-107 395.2 770 35.3
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 2.6e-107 394.0 787 35.6
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 1.7e-106 391.3 791 35.1
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 4.2e-105 386.7 744 37.4
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 7.1e-105 386.0 701 36.9
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 7.1e-105 386.0 807 34.0
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.1e-102 378.6 777 35.6
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.5e-102 378.3 766 36.8
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 2.5e-102 377.5 446 48.0
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 2.5e-102 377.5 749 36.0
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 4.8e-101 373.2 714 37.1
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 6.3e-101 372.9 755 34.3
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 5.3e-100 369.8 921 32.5
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 4.5e-99 366.7 749 35.6
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 3.6e-96 357.1 455 42.2
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 1.3e-93 348.6 745 34.0
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 2.8e-93 347.4 847 31.5
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 7.7e-91 339.3 649 34.5
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 6.5e-90 336.3 748 33.6
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 7.9e-88 329.3 679 34.5
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 6.7e-87 326.2 751 35.6
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 1.7e-85 321.6 625 37.0
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 1.4e-84 318.5 792 33.5
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 6.9e-84 316.2 730 31.8
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 6.5e-82 309.7 780 34.0
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 1.9e-81 308.1 730 33.2
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 7.2e-81 306.2 296 55.7
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 2.7e-80 304.3 819 31.9
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.0e-79 302.4 294 56.1
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 3.0e-79 300.8 733 31.8
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 3.9e-79 300.4 747 32.1
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 2.0e-78 298.1 740 32.2
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 4.4e-78 297.0 732 32.2
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 6.3e-77 293.1 736 33.2
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 1.4e-76 292.0 738 32.8
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 4.1e-76 290.4 740 32.2
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 5.3e-76 290.0 757 30.8
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 5.3e-76 290.0 782 31.7
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 1.2e-75 288.9 732 33.2
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 1.6e-75 288.5 736 31.9
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 3.5e-75 287.3 293 53.6
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.8e-74 283.9 305 51.1
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 1.9e-73 281.6 730 32.5
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 1.9e-73 281.6 258 58.1
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 1.2e-72 278.9 343 44.3
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 1.6e-72 278.5 306 47.7
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 2.1e-72 278.1 758 31.5
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 2.7e-72 277.7 718 31.6
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 4.7e-72 276.9 313 49.2
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 4.7e-72 276.9 747 32.4
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 1.0e-71 275.8 312 47.8
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 2.6e-70 271.2 738 30.1
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 1.1e-68 265.8 734 30.7
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 1.6e-67 261.9 299 45.8
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 2.9e-66 257.7 303 47.2
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.2e-64 252.3 321 44.5
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 1.6e-64 251.9 819 27.0
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 3.6e-64 250.8 263 53.2
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 4.7e-64 250.4 743 30.1
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 6.1e-64 250.0 298 48.3
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 1.8e-63 248.4 659 30.7
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 2.3e-63 248.1 750 29.5
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 8.8e-63 246.1 291 47.8
FAN22G1497 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.0e-62 245.0 131 93.9
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.8e-60 238.4 728 29.8
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 2.4e-60 238.0 292 47.9
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 7.0e-60 236.5 331 42.3
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 5.9e-59 233.4 493 34.3
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 3.8e-58 230.7 265 46.8
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.1e-57 229.2 274 47.8
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 1.5e-57 228.8 511 31.9
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 1.9e-57 228.4 813 28.7
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 2.1e-56 224.9 296 43.9
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 3.7e-53 214.2 745 27.8
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 1.1e-52 212.6 303 39.6
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 3.8e-50 204.1 730 29.2
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 2.5e-49 201.4 255 47.1
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 7.3e-49 199.9 254 45.3
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 3.6e-48 197.6 227 47.6
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 6.1e-48 196.8 247 47.0
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 2.6e-46 191.4 751 26.4
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 4.4e-46 190.7 281 40.6
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.7e-45 187.6 210 48.6
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 2.4e-44 184.9 677 27.8
Haze_01516 Corylus avellana HOM05D004076 ORTHO05D004606 1.2e-38 166.0 259 40.9
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.7e-37 162.2 186 48.9
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.7e-37 162.2 186 48.9
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 4.6e-35 154.1 620 26.0
Gohir.D09G203266 Gossypium hirsutum HOM05D004076 ORTHO05D004606 1.0e-34 152.9 314 37.3
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 3.3e-33 147.9 171 48.0
Lj6A56G23 Lonicera japonica HOM05D004076 ORTHO05D004606 4.1e-28 131.0 300 33.7
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 3.0e-26 124.8 227 36.1
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 4.7e-24 117.5 129 46.5
Glyma.12G052967 Glycine max HOM05D004076 ORTHO05D004606 5.2e-23 114.0 411 26.5
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 6.8e-23 113.6 566 23.5
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 8.9e-23 113.2 293 29.0
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 1.5e-22 112.5 215 36.7
Ciclev10022885m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.4e-20 105.9 111 52.3
Lj8A15T42 Lonicera japonica HOM05D004076 ORTHO05D004606 2.7e-19 101.7 127 44.9
C08p51510 Brassica napus HOM05D004076 ORTHO05D004606 3.5e-19 101.3 184 37.0
Hund12007 Selenicereus undatus HOM05D004076 ORTHO05D004606 3.5e-19 101.3 131 43.5
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 4.6e-19 100.9 160 37.5
BraA09t42054Z Brassica rapa HOM05D004076 ORTHO05D004606 6.0e-19 100.5 182 35.7
BolC8t52678H Brassica oleracea HOM05D004076 ORTHO05D004606 3.0e-18 98.2 184 36.4
BolC8t52679H Brassica oleracea HOM05D004076 ORTHO05D004606 2.5e-17 95.1 176 36.9
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 2.5e-17 95.1 109 44.0
A09p67220 Brassica napus HOM05D004076 ORTHO05D004606 5.6e-17 94.0 203 33.0
BraA09t42055Z Brassica rapa HOM05D004076 ORTHO05D004606 2.8e-16 91.7 181 35.4
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 2.8e-16 91.7 77 61.0
BcaC07g42097 Brassica carinata HOM05D004076 ORTHO05D004606 1.4e-15 89.4 147 36.7
MBI08_g23495_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D003073 7.8e-11 73.6 187 28.9
arahy.Tifrunner.gnm1.ann1.S79H68 Arachis hypogaea HOM05D004076 ORTHO05D004606 8.7e-10 70.1 128 30.5
SEGI_15340 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 3.6e-08 64.7 103 35.0
Peaxi162Scf00297g01127 Petunia axillaris HOM05D004076 ORTHO05D004606 4.8e-08 64.3 243 26.3


User provided reference genes

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