Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G1151 Fragaria x ananassa HOM05D004409 ORTHO05D005292 2.6e-61 238.4 111 100.0
FAN03G2468 Fragaria x ananassa HOM05D004409 ORTHO05D005292 4.6e-58 227.6 111 97.3
FvH4_7g26430 Fragaria vesca HOM05D004409 ORTHO05D005292 4.0e-54 214.5 111 90.1
FAN10G4140 Fragaria x ananassa HOM05D004409 ORTHO05D005292 3.4e-53 211.5 111 88.3
FAN01G0604 Fragaria x ananassa HOM05D004409 ORTHO05D005292 1.3e-52 209.5 111 88.3
FAN06G5092 Fragaria x ananassa HOM05D004409 ORTHO05D005292 1.4e-51 206.1 106 89.6
RcHm_v2.0_Chr1g0328141 Rosa chinensis HOM05D004409 ORTHO05D005292 4.3e-48 194.5 111 82.0
RcHm_v2.0_Chr1g0372991 Rosa chinensis HOM05D004409 ORTHO05D005292 4.3e-48 194.5 111 82.0
FvH4_7g26400 Fragaria vesca HOM05D004409 ORTHO05D005292 7.1e-35 150.6 115 66.1
RcHm_v2.0_Chr1g0328171 Rosa chinensis HOM05D004409 ORTHO05D005292 1.6e-34 149.4 105 67.6
RcHm_v2.0_Chr1g0372951 Rosa chinensis HOM05D004409 ORTHO05D005292 1.6e-34 149.4 112 64.3
FAN10G3781 Fragaria x ananassa HOM05D004409 ORTHO05D005292 4.6e-34 147.9 113 64.6
COL.COLO4_37301 Corchorus olitorius HOM05D004409 ORTHO05D005292 3.7e-31 138.3 101 64.4
Thecc.03G144800 Theobroma cacao HOM05D004409 ORTHO05D005292 6.2e-31 137.5 106 61.3
CANSAT56G2887 Cannabis sativa HOM05D004409 ORTHO05D005292 1.8e-30 136.0 103 60.2
Dinv34530 Davidia involucrata HOM05D004409 ORTHO05D005292 1.2e-29 133.3 104 57.7
Prupe.7G057100 Prunus persica HOM05D004409 ORTHO05D005292 2.0e-29 132.5 107 58.9
Thecc.03G144900 Theobroma cacao HOM05D004409 ORTHO05D005292 3.4e-29 131.7 107 56.1
Atru.chr6.1971 Acer truncatum HOM05D004409 ORTHO05D005292 3.8e-28 128.3 106 58.5
Duzib205G0410 Durio zibethinus HOM05D004409 ORTHO05D005292 3.8e-28 128.3 106 57.5
PGR142G3629 Punica granatum HOM05D004409 ORTHO05D005292 4.9e-28 127.9 105 58.1
Hma1.2p1_1014F.1_g247850 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 1.4e-27 126.3 102 57.8
Thecc.03G144700 Theobroma cacao HOM05D004409 ORTHO05D005292 1.4e-27 126.3 111 55.9
GSVIVG01013815001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.4e-27 126.3 112 49.1
Actinidia01026 Actinidia chinensis HOM05D004409 ORTHO05D005292 2.4e-27 125.6 104 55.8
GSVIVG01024506001 Vitis vinifera HOM05D004409 ORTHO05D005292 2.4e-27 125.6 112 55.4
COL.COLO4_37302 Corchorus olitorius HOM05D004409 ORTHO05D005292 1.6e-26 122.9 103 57.3
Oeu056339.1 Olea europaea HOM05D004409 ORTHO05D005292 2.1e-26 122.5 101 56.4
MD07G1239700 Malus domestica HOM05D004409 ORTHO05D005292 3.5e-26 121.7 113 54.0
GSVIVG01013894001 Vitis vinifera HOM05D004409 ORTHO05D005292 4.6e-26 121.3 89 59.6
GSVIVG01013816001 Vitis vinifera HOM05D004409 ORTHO05D005292 6.0e-26 120.9 89 59.6
Eucgr.K00114 Eucalyptus grandis HOM05D004409 ORTHO05D005292 1.0e-25 120.2 83 61.4
MD07G1239500 Malus domestica HOM05D004409 ORTHO05D005292 1.0e-25 120.2 103 51.5
Duzib205G0528 Durio zibethinus HOM05D004409 ORTHO05D005292 1.3e-25 119.8 113 51.3
Thecc.03G239100 Theobroma cacao HOM05D004409 ORTHO05D005292 1.3e-25 119.8 105 52.4
TWI39G0462 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 1.8e-25 119.4 92 60.9
Hma1.2p1_1014F.1_g247840 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 2.3e-25 119.0 102 55.9
Gohir.A12G212400 Gossypium hirsutum HOM05D004409 ORTHO05D005292 3.9e-25 118.2 111 49.5
Gorai.008G230500 Gossypium raimondii HOM05D004409 ORTHO05D005292 3.9e-25 118.2 111 49.5
MD07G1239800 Malus domestica HOM05D004409 ORTHO05D005292 3.9e-25 118.2 111 54.1
TWI39G0310 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 3.9e-25 118.2 92 59.8
CANSAT56G4079 Cannabis sativa HOM05D004409 ORTHO05D005292 6.7e-25 117.5 105 51.4
Gohir.D12G214900 Gossypium hirsutum HOM05D004409 ORTHO05D005292 6.7e-25 117.5 86 58.1
TWI39G0819 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 8.7e-25 117.1 92 57.6
TWI39G0193 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 1.1e-24 116.7 92 58.7
CANSAT56G0658 Cannabis sativa HOM05D004409 ORTHO05D005292 1.5e-24 116.3 105 51.4
Atru.chr9.1197 Acer truncatum HOM05D004409 ORTHO05D005292 1.9e-24 115.9 107 48.6
Cpa.g.sc13.213 Carica papaya HOM05D004409 ORTHO05D005292 2.5e-24 115.5 111 46.8
Oeu006074.1 Olea europaea HOM05D004409 ORTHO05D005292 3.3e-24 115.2 105 56.2
QL12p008592 Quercus lobata HOM05D004409 ORTHO05D005292 3.3e-24 115.2 104 50.0
Dinv28881 Davidia involucrata HOM05D004409 ORTHO05D005292 4.3e-24 114.8 106 52.8
GSVIVG01013825001 Vitis vinifera HOM05D004409 ORTHO05D005292 5.6e-24 114.4 112 49.1
CSS0044628 Camellia sinensis var. sinensis HOM05D004409 ORTHO05D005292 7.4e-24 114.0 106 48.1
Ciclev10022946m.g Citrus clementina HOM05D004409 ORTHO05D005292 7.4e-24 114.0 113 48.7
Cc08_g11210 Coffea canephora HOM05D004409 ORTHO05D005292 7.4e-24 114.0 106 51.9
Sabra03G0054600 Salix brachista HOM05D004409 ORTHO05D005292 7.4e-24 114.0 113 49.6
Peaxi162Scf00102g00085 Petunia axillaris HOM05D004409 ORTHO05D005292 9.6e-24 113.6 101 50.5
GSVIVG01004835001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.3e-23 113.2 104 44.2
Actinidia31492 Actinidia chinensis HOM05D004409 ORTHO05D005292 1.6e-23 112.8 105 48.6
Manes.01G089900 Manihot esculenta HOM05D004409 ORTHO05D005292 1.6e-23 112.8 106 50.9
CANSAT56G2756 Cannabis sativa HOM05D004409 ORTHO05D005292 2.1e-23 112.5 102 50.0
COL.COLO4_32251 Corchorus olitorius HOM05D004409 ORTHO05D005292 2.1e-23 112.5 107 50.5
TWI60G0543 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 2.1e-23 112.5 113 48.7
Potri.003G084000 Populus trichocarpa HOM05D004409 ORTHO05D005292 2.8e-23 112.1 112 48.2
Ciclev10030379m.g Citrus clementina HOM05D004409 ORTHO05D005292 4.8e-23 111.3 83 57.8
DCAR_008327 Daucus carota HOM05D004409 ORTHO05D005292 1.1e-22 110.2 81 58.0
TAR375G0484 Trochodendron aralioides HOM05D004409 ORTHO05D005292 1.4e-22 109.8 111 45.9
Actinidia10866 Actinidia chinensis HOM05D004409 ORTHO05D005292 1.8e-22 109.4 90 53.3
Cc06_g12260 Coffea canephora HOM05D004409 ORTHO05D005292 2.4e-22 109.0 85 51.8
Duzib068G1042 Durio zibethinus HOM05D004409 ORTHO05D005292 2.4e-22 109.0 113 46.9
TAR375G0498 Trochodendron aralioides HOM05D004409 ORTHO05D005292 2.4e-22 109.0 111 46.8
GSVIVG01004836001 Vitis vinifera HOM05D004409 ORTHO05D005292 2.4e-22 109.0 106 47.2
GSVIVG01024502001 Vitis vinifera HOM05D004409 ORTHO05D005292 2.4e-22 109.0 112 46.4
Aqoxy3G02644 Aquilegia oxysepala HOM05D004409 ORTHO05D005292 3.1e-22 108.6 105 51.4
Hma1.2p1_1014F.1_g247830 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 3.1e-22 108.6 100 49.0
GSVIVG01004822001 Vitis vinifera HOM05D004409 ORTHO05D005292 3.1e-22 108.6 86 55.8
GSVIVG01004827001 Vitis vinifera HOM05D004409 ORTHO05D005292 3.1e-22 108.6 86 55.8
ECA240G1407 Erigeron canadensis HOM05D004409 ORTHO05D005292 4.0e-22 108.2 86 53.5
Nitab4.5_0000185g0190 Nicotiana tabacum HOM05D004409 ORTHO05D005292 6.9e-22 107.5 103 50.5
ClCG10G002150 Citrullus lanatus HOM05D004409 ORTHO05D005292 9.0e-22 107.1 106 47.2
Sed0027041 Sechium edule HOM05D004409 ORTHO05D005292 1.2e-21 106.7 102 48.0
TAR375G0026 Trochodendron aralioides HOM05D004409 ORTHO05D005292 1.2e-21 106.7 111 46.8
PGSC0003DMG400026212 Solanum tuberosum HOM05D004409 ORTHO05D005292 2.0e-21 105.9 84 53.6
CANSAT21G0033 Cannabis sativa HOM05D004409 ORTHO05D005292 2.6e-21 105.5 113 45.1
THA.LOC104809923 Tarenaya hassleriana HOM05D004409 ORTHO05D005292 2.6e-21 105.5 104 44.2
HanXRQChr03g0089681 Helianthus annuus HOM05D004409 ORTHO05D005292 4.5e-21 104.8 105 46.7
Lsat_1_v5_gn_6_94501 Lactuca sativa HOM05D004409 ORTHO05D005292 4.5e-21 104.8 102 46.1
Ciclev10022894m.g Citrus clementina HOM05D004409 ORTHO05D005292 5.8e-21 104.4 102 42.2
MELO3C014170.2 Cucumis melo HOM05D004409 ORTHO05D005292 5.8e-21 104.4 111 44.1
HanXRQChr13g0419061 Helianthus annuus HOM05D004409 ORTHO05D005292 5.8e-21 104.4 105 45.7
MSTRG.27238 Avicennia marina HOM05D004409 ORTHO05D005292 7.6e-21 104.0 114 47.4
Cfa012334 Carpinus fangiana HOM05D004409 ORTHO05D005292 7.6e-21 104.0 98 48.0
Prupe.5G054600 Prunus persica HOM05D004409 ORTHO05D005292 7.6e-21 104.0 108 45.4
Hund27103 Selenicereus undatus HOM05D004409 ORTHO05D005292 7.6e-21 104.0 104 44.2
HanXRQChr13g0419051 Helianthus annuus HOM05D004409 ORTHO05D005292 1.0e-20 103.6 104 45.2
PGR042G3450 Punica granatum HOM05D004409 ORTHO05D005292 1.0e-20 103.6 110 46.4
EL10Ac1g00121 Beta vulgaris HOM05D004409 ORTHO05D005292 1.3e-20 103.2 107 45.8
TAR636G0884 Trochodendron aralioides HOM05D004409 ORTHO05D005292 1.3e-20 103.2 113 48.7
CsaV3_3G004710 Cucumis sativus L. HOM05D004409 ORTHO05D005292 1.7e-20 102.8 111 43.2
ECA240G0589 Erigeron canadensis HOM05D004409 ORTHO05D005292 1.7e-20 102.8 105 43.8
Migut.H01906 Erythranthe guttata HOM05D004409 ORTHO05D005292 1.7e-20 102.8 105 46.7
CANSAT21G0737 Cannabis sativa HOM05D004409 ORTHO05D005292 2.2e-20 102.4 105 45.7
GSVIVG01004838001 Vitis vinifera HOM05D004409 ORTHO05D005292 2.2e-20 102.4 90 48.9
Atru.chr9.1196 Acer truncatum HOM05D004409 ORTHO05D005292 3.8e-20 101.7 90 51.1
COL.COLO4_06685 Corchorus olitorius HOM05D004409 ORTHO05D005292 3.8e-20 101.7 81 54.3
MELO3C013895.2 Cucumis melo HOM05D004409 ORTHO05D005292 3.8e-20 101.7 109 45.9
DCAR_003519 Daucus carota HOM05D004409 ORTHO05D005292 3.8e-20 101.7 83 51.8
Thecc.07G180600 Theobroma cacao HOM05D004409 ORTHO05D005292 3.8e-20 101.7 104 44.2
CAN.G572.17 Capsicum annuum HOM05D004409 ORTHO05D005292 4.9e-20 101.3 100 47.0
HanXRQChr13g0418291 Helianthus annuus HOM05D004409 ORTHO05D005292 4.9e-20 101.3 106 44.3
Hma1.2p1_3159F.1_g333389 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 6.5e-20 100.9 100 47.0
Lsat_1_v5_gn_6_94401 Lactuca sativa HOM05D004409 ORTHO05D005292 6.5e-20 100.9 106 46.2
Oeu019420.1 Olea europaea HOM05D004409 ORTHO05D005292 8.4e-20 100.5 106 46.2
Aqoxy6G00065 Aquilegia oxysepala HOM05D004409 ORTHO05D005292 1.1e-19 100.1 105 44.8
Cfa012333 Carpinus fangiana HOM05D004409 ORTHO05D005292 1.1e-19 100.1 107 45.8
Ciclev10033339m.g Citrus clementina HOM05D004409 ORTHO05D005292 1.1e-19 100.1 81 54.3
Migut.H01907 Erythranthe guttata HOM05D004409 ORTHO05D005292 2.5e-19 99.0 105 45.7
CsaV3_3G002240 Cucumis sativus L. HOM05D004409 ORTHO05D005292 3.2e-19 98.6 109 42.2
Duzib068G0789 Durio zibethinus HOM05D004409 ORTHO05D005292 3.2e-19 98.6 102 47.1
COL.COLO4_21695 Corchorus olitorius HOM05D004409 ORTHO05D005292 7.1e-19 97.4 81 51.9
DCAR_005587 Daucus carota HOM05D004409 ORTHO05D005292 7.1e-19 97.4 102 45.1
Dinv25140 Davidia involucrata HOM05D004409 ORTHO05D005292 7.1e-19 97.4 106 42.5
SGA_v2.0_scaffold91G28102 Striga asiatica HOM05D004409 ORTHO05D005292 9.3e-19 97.1 105 46.7
Gohir.D13G124300 Gossypium hirsutum HOM05D004409 ORTHO05D005292 1.6e-18 96.3 103 45.6
ECA240G4009 Erigeron canadensis HOM05D004409 ORTHO05D005292 2.1e-18 95.9 81 51.9
GSVIVG01004832001 Vitis vinifera HOM05D004409 ORTHO05D005292 2.1e-18 95.9 86 46.5
CAN.G845.22 Capsicum annuum HOM05D004409 ORTHO05D005292 2.7e-18 95.5 81 48.1
Peaxi162Scf00391g00715 Petunia axillaris HOM05D004409 ORTHO05D005292 4.6e-18 94.7 105 42.9
HanXRQChr03g0089691 Helianthus annuus HOM05D004409 ORTHO05D005292 6.0e-18 94.4 104 45.2
Dinv28880 Davidia involucrata HOM05D001887 ORTHO05D003756 1.0e-17 93.6 108 38.9
Actinidia25914 Actinidia chinensis HOM05D004409 ORTHO05D005292 3.0e-17 92.0 107 42.1
TAR375G0880 Trochodendron aralioides HOM05D004409 ORTHO05D005292 5.1e-17 91.3 102 44.1
ATR1136G026 Amborella trichopoda HOM05D004409 ORTHO05D005292 1.1e-16 90.1 75 50.7
Thecc.08G189000 Theobroma cacao HOM05D004409 ORTHO05D005292 1.9e-16 89.4 100 46.0
Migut.J00932 Erythranthe guttata HOM05D004409 ORTHO05D005292 3.3e-16 88.6 101 44.6
ATR1136G211 Amborella trichopoda HOM05D004409 ORTHO05D005292 5.7e-16 87.8 102 42.2
Haze_08359 Corylus avellana HOM05D004409 ORTHO05D005292 9.7e-16 87.0 89 48.3
THA.LOC104816486 Tarenaya hassleriana HOM05D004409 ORTHO05D005292 1.6e-15 86.3 81 44.4
Eucgr.K00115 Eucalyptus grandis HOM05D004409 ORTHO05D005292 6.3e-15 84.3 90 47.8
Aa31LG9G14800 Aethionema arabicum HOM05D004409 ORTHO05D005292 3.1e-14 82.0 79 44.3
ATR1136G215 Amborella trichopoda HOM05D004409 ORTHO05D005292 3.1e-14 82.0 75 41.3
Ciclev10033338m.g Citrus clementina HOM05D004409 ORTHO05D005292 4.1e-14 81.6 94 37.2
ATR0745G048 Amborella trichopoda HOM05D004409 ORTHO05D005292 5.0e-12 74.7 106 36.8
BcaC01g03728 Brassica carinata HOM05D004409 ORTHO05D005292 3.2e-11 72.0 79 43.0
Sp6g08250 Schrenkiella parvula HOM05D004409 ORTHO05D005292 4.2e-11 71.6 79 40.5
BcaB04g18966 Brassica carinata HOM05D004409 ORTHO05D005292 5.5e-11 71.2 79 40.5
Gorai.013G138900 Gossypium raimondii HOM05D004409 ORTHO05D005292 1.6e-10 69.7 58 48.3
A03p40420 Brassica napus HOM05D004409 ORTHO05D005292 2.3e-09 65.9 74 41.9
BolC3t17205H Brassica oleracea HOM05D004409 ORTHO05D005292 2.3e-09 65.9 74 41.9
BraA03t13197Z Brassica rapa HOM05D004409 ORTHO05D005292 2.3e-09 65.9 74 41.9
Carub.0006s2782 Capsella rubella HOM05D004409 ORTHO05D005292 2.3e-09 65.9 84 38.1
C03p49230 Brassica napus HOM05D004409 ORTHO05D005292 3.0e-09 65.5 76 39.5
CARHR260260 Cardamine hirsuta HOM05D004409 ORTHO05D005292 3.0e-09 65.5 84 38.1
SMO134G0054 Selaginella moellendorffii HOM05D004409 ORTHO05D005292 3.0e-09 65.5 104 32.7
TAR623G0756 Trochodendron aralioides HOM05D002739 ORTHO05D002877 1.5e-08 63.2 104 29.8
PSO339G0161 Papaver somniferum HOM05D002739 ORTHO05D002877 1.9e-08 62.8 82 32.9
Nn7g36442 Nelumbo nucifera HOM05D002739 ORTHO05D002877 5.7e-08 61.2 103 27.2
Nn7g36457 Nelumbo nucifera HOM05D002739 ORTHO05D002877 5.7e-08 61.2 103 27.2
Nn7g36459 Nelumbo nucifera HOM05D002739 ORTHO05D002877 5.7e-08 61.2 84 32.1
Nn7g38448 Nelumbo nucifera HOM05D002739 ORTHO05D002877 5.7e-08 61.2 103 27.2
Dinv34529 Davidia involucrata HOM05D004409 ORTHO05D005292 1.7e-07 59.7 39 71.8
Sc10g0004220 Simmondsia chinensis HOM05D002739 ORTHO05D002877 2.8e-07 58.9 109 26.6
Actinidia16366 Actinidia chinensis HOM05D002739 ORTHO05D002877 1.1e-06 57.0 59 42.4
C09p37510 Brassica napus HOM05D004489 ORTHO05D032456 4.1e-06 55.1 103 29.1
BolC9t56581H Brassica oleracea HOM05D004489 ORTHO05D032456 4.1e-06 55.1 103 29.1
Gohir.A07G121800 Gossypium hirsutum HOM05D002739 ORTHO05D002877 4.1e-06 55.1 96 29.2
Gohir.D07G126100 Gossypium hirsutum HOM05D002739 ORTHO05D002877 5.3e-06 54.7 95 29.5
PSO384G3631 Papaver somniferum HOM05D002739 ORTHO05D002877 5.3e-06 54.7 98 27.6
BcaB01g02799 Brassica carinata HOM05D004409 ORTHO05D005292 6.9e-06 54.3 84 33.3
CSS0046368 Camellia sinensis var. sinensis HOM05D002739 ORTHO05D002877 6.9e-06 54.3 92 30.4
PSO384G1869 Papaver somniferum HOM05D002739 ORTHO05D002877 6.9e-06 54.3 82 30.5
SMO111G0095 Selaginella moellendorffii HOM05D004409 ORTHO05D005292 9.1e-06 53.9 88 28.4


User provided reference genes

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