Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G1125 Fragaria x ananassa HOM05D003388 ORTHO05D003616 1.1e-63 246.5 128 100.0
FvH4_4g31050 Fragaria vesca HOM05D003388 ORTHO05D003616 1.0e-61 240.0 128 97.7
FAN12G0832 Fragaria x ananassa HOM05D003388 ORTHO05D003616 1.0e-61 240.0 128 97.7
RcHm_v2.0_Chr4g0439431 Rosa chinensis HOM05D003388 ORTHO05D003616 5.6e-60 234.2 128 94.5
FAN22G1619 Fragaria x ananassa HOM05D003388 ORTHO05D003616 4.2e-47 191.4 101 97.0
Prupe.1G278000 Prunus persica HOM05D003388 ORTHO05D003616 1.3e-43 179.9 127 75.6
MD13G1069000 Malus domestica HOM05D003388 ORTHO05D003616 1.3e-40 169.9 127 72.4
Duzib251G0885 Durio zibethinus HOM05D003388 ORTHO05D003616 2.9e-40 168.7 132 65.2
Duzib248G0503 Durio zibethinus HOM05D003388 ORTHO05D003616 1.6e-38 162.9 132 64.4
Thecc.02G342400 Theobroma cacao HOM05D003388 ORTHO05D003616 1.6e-38 162.9 132 64.4
COL.COLO4_27999 Corchorus olitorius HOM05D003388 ORTHO05D003616 6.1e-38 161.0 132 65.9
GSVIVG01012615001 Vitis vinifera HOM05D003388 ORTHO05D003616 1.1e-36 156.8 125 65.6
Gohir.D13G076800 Gossypium hirsutum HOM05D003388 ORTHO05D003616 2.5e-36 155.6 132 61.4
Gorai.013G087800 Gossypium raimondii HOM05D003388 ORTHO05D003616 2.5e-36 155.6 132 61.4
ClCG05G024100 Citrullus lanatus HOM05D003388 ORTHO05D003616 1.3e-35 153.3 132 59.8
CSS0011500 Camellia sinensis var. sinensis HOM05D003388 ORTHO05D003616 1.7e-35 152.9 133 62.4
Eucgr.B03207 Eucalyptus grandis HOM05D003388 ORTHO05D003616 3.7e-35 151.8 124 63.7
Lsat_1_v5_gn_8_50121 Lactuca sativa HOM05D003388 ORTHO05D003616 8.2e-35 150.6 122 62.3
HanXRQChr08g0210711 Helianthus annuus HOM05D003388 ORTHO05D003616 2.4e-34 149.1 122 62.3
Aa31LG7G8370 Aethionema arabicum HOM05D003388 ORTHO05D003616 3.1e-34 148.7 127 61.4
MELO3C012115.2 Cucumis melo HOM05D003388 ORTHO05D003616 3.1e-34 148.7 127 61.4
Lj3P1035T24 Lonicera japonica HOM05D003388 ORTHO05D003616 3.1e-34 148.7 132 60.6
A09p40170 Brassica napus HOM05D003388 ORTHO05D003616 4.1e-34 148.3 129 62.8
BraA09t39515Z Brassica rapa HOM05D003388 ORTHO05D003616 4.1e-34 148.3 129 62.8
AL1G38950 Arabidopsis lyrata HOM05D003388 ORTHO05D003616 5.3e-34 147.9 126 62.7
Atru.chr11.1747 Acer truncatum HOM05D003388 ORTHO05D003616 9.1e-34 147.1 126 60.3
ECA233G4218 Erigeron canadensis HOM05D003388 ORTHO05D003616 9.1e-34 147.1 122 62.3
AT1G26760 Arabidopsis thaliana HOM05D003388 ORTHO05D003616 1.5e-33 146.4 126 61.1
Cpa.g.sc1.49 Carica papaya HOM05D003388 ORTHO05D003616 1.5e-33 146.4 128 60.9
Thhalv10007288m.g Eutrema salsugineum HOM05D003388 ORTHO05D003616 1.5e-33 146.4 126 61.1
CARHR025200 Cardamine hirsuta HOM05D003388 ORTHO05D003616 2.0e-33 146.0 128 62.5
PGR102G2155 Punica granatum HOM05D003388 ORTHO05D003616 2.0e-33 146.0 124 60.5
Sp1g22050 Schrenkiella parvula HOM05D003388 ORTHO05D003616 2.0e-33 146.0 126 61.1
Carub.0001s2426 Capsella rubella HOM05D003388 ORTHO05D003616 2.6e-33 145.6 126 61.1
CiPaw.05G132000 Carya illinoinensis HOM05D003388 ORTHO05D003616 2.6e-33 145.6 125 60.0
BcaC05g26390 Brassica carinata HOM05D003388 ORTHO05D003616 3.4e-33 145.2 129 61.2
C05p24210 Brassica napus HOM05D003388 ORTHO05D003616 3.4e-33 145.2 129 61.2
BolC5t31157H Brassica oleracea HOM05D003388 ORTHO05D003616 3.4e-33 145.2 129 61.2
CsaV3_5G032950 Cucumis sativus L. HOM05D003388 ORTHO05D003616 4.5e-33 144.8 126 60.3
Nn3g17299 Nelumbo nucifera HOM05D003388 ORTHO05D003616 5.9e-33 144.4 121 62.8
Cfa008954 Carpinus fangiana HOM05D003388 ORTHO05D003616 7.7e-33 144.1 125 59.2
Hma1.2p1_1079F.1_g254900 Hydrangea macrophylla HOM05D003388 ORTHO05D003616 7.7e-33 144.1 125 59.2
Hma1.2p1_1079F.1_g254910 Hydrangea macrophylla HOM05D003388 ORTHO05D003616 7.7e-33 144.1 125 59.2
Sabra08G0066900 Salix brachista HOM05D003388 ORTHO05D003616 7.7e-33 144.1 126 61.9
Aqoxy3G03455 Aquilegia oxysepala HOM05D003388 ORTHO05D003616 1.0e-32 143.7 129 58.1
AUR62005822 Chenopodium quinoa HOM05D003388 ORTHO05D003616 1.0e-32 143.7 127 58.3
AUR62032817 Chenopodium quinoa HOM05D003388 ORTHO05D003616 1.0e-32 143.7 127 58.3
Haze_11983 Corylus avellana HOM05D003388 ORTHO05D003616 1.0e-32 143.7 125 58.4
DCAR_007170 Daucus carota HOM05D003388 ORTHO05D003616 1.3e-32 143.3 128 58.6
Nitab4.5_0004300g0010 Nicotiana tabacum HOM05D003388 ORTHO05D003616 3.8e-32 141.7 119 58.8
TAR629G0929 Trochodendron aralioides HOM05D003388 ORTHO05D003616 5.0e-32 141.4 129 61.2
EL10Ac6g13243 Beta vulgaris HOM05D003388 ORTHO05D003616 6.5e-32 141.0 127 56.7
Rhsim10G0115600 Rhododendron simsii HOM05D003388 ORTHO05D003616 8.5e-32 140.6 124 60.5
MSTRG.7787 Avicennia marina HOM05D003388 ORTHO05D003616 1.1e-31 140.2 118 61.0
Ah.03g134820 Amaranthus hybridus HOM05D003388 ORTHO05D003616 1.9e-31 139.4 126 55.6
Ciclev10031048m.g Citrus clementina HOM05D003388 ORTHO05D003616 2.5e-31 139.0 122 59.0
Cc11_g12730 Coffea canephora HOM05D003388 ORTHO05D003616 3.2e-31 138.7 122 58.2
Manes.01G034100 Manihot esculenta HOM05D003388 ORTHO05D003616 3.2e-31 138.7 132 54.5
Medtr4g082140 Medicago truncatula HOM05D003388 ORTHO05D003616 3.2e-31 138.7 128 57.0
Glyma.07G229200 Glycine max HOM05D003388 ORTHO05D003616 5.5e-31 137.9 126 60.3
TWI75G1739 Tripterygium wilfordii HOM05D003388 ORTHO05D003616 5.5e-31 137.9 126 58.7
Nitab4.5_0000040g0070 Nicotiana tabacum HOM05D003388 ORTHO05D003616 9.4e-31 137.1 119 56.3
THA.LOC104803358 Tarenaya hassleriana HOM05D003388 ORTHO05D003616 1.2e-30 136.7 132 57.6
Psat7g160040 Pisum sativum HOM05D003388 ORTHO05D003616 1.6e-30 136.3 127 54.3
Potri.008G089500 Populus trichocarpa HOM05D003388 ORTHO05D003616 1.6e-30 136.3 126 57.9
CANSAT64G0380 Cannabis sativa HOM05D003388 ORTHO05D003616 2.7e-30 135.6 122 59.0
Actinidia12300 Actinidia chinensis HOM05D003388 ORTHO05D003616 4.7e-30 134.8 132 55.3
QL03p068106 Quercus lobata HOM05D003388 ORTHO05D003616 4.7e-30 134.8 126 56.3
TPR.G34080 Trifolium pratense HOM05D003388 ORTHO05D003616 6.1e-30 134.4 130 55.4
Ca_18822_v3 Cicer arietinum L. HOM05D003388 ORTHO05D003616 7.9e-30 134.0 130 53.8
Ca_30739_v3 Cicer arietinum L. HOM05D003388 ORTHO05D003616 7.9e-30 134.0 130 53.8
Migut.L01268 Erythranthe guttata HOM05D003388 ORTHO05D003616 1.0e-29 133.7 133 54.9
CAN.G1335.17 Capsicum annuum HOM05D003388 ORTHO05D003616 2.3e-29 132.5 120 54.2
Peaxi162Scf00222g00073 Petunia axillaris HOM05D003388 ORTHO05D003616 3.0e-29 132.1 120 55.8
Sed0018691 Sechium edule HOM05D003388 ORTHO05D003616 6.7e-29 131.0 128 57.0
Sopen05g003620 Solanum pennellii HOM05D003388 ORTHO05D003616 6.7e-29 131.0 118 52.5
Dinv34132 Davidia involucrata HOM05D003388 ORTHO05D003616 8.8e-29 130.6 111 60.4
PGSC0003DMG400018436 Solanum tuberosum HOM05D003388 ORTHO05D003616 8.8e-29 130.6 120 51.7
Sc14g0008080 Simmondsia chinensis HOM05D003388 ORTHO05D003616 1.5e-28 129.8 119 53.8
CiPaw.05G131500 Carya illinoinensis HOM05D003388 ORTHO05D003616 5.7e-28 127.9 121 57.0
SalBow2G1725 Salvia bowleyana HOM05D003388 ORTHO05D003616 5.7e-28 127.9 111 59.5
Phvul.002G170100 Phaseolus vulgaris HOM05D003388 ORTHO05D003616 7.4e-28 127.5 126 54.8
Lj4g0011095 Lotus japonicus HOM05D003388 ORTHO05D003616 2.2e-27 125.9 129 50.4
Lalb_Chr09g0329211 Lupinus albus HOM05D003388 ORTHO05D003616 3.7e-27 125.2 124 52.4
PSO832G1848 Papaver somniferum HOM05D003388 ORTHO05D003616 3.7e-27 125.2 126 57.9
VMungo0251G1426 Vigna mungo HOM05D003388 ORTHO05D003616 4.8e-27 124.8 128 52.3
Actinidia33214 Actinidia chinensis HOM05D003388 ORTHO05D003616 1.1e-26 123.6 119 58.8
PSO832G3938 Papaver somniferum HOM05D003388 ORTHO05D003616 1.8e-26 122.9 126 57.9
MBI13_g11341_MAGBIO Magnolia biondii HOM05D003388 ORTHO05D003616 2.4e-26 122.5 113 58.4
SGA_v2.0_scaffold172G38951 Striga asiatica HOM05D004340 ORTHO05D006363 1.2e-25 120.2 125 48.8
PSO013G0084 Papaver somniferum HOM05D003388 ORTHO05D003616 2.6e-25 119.0 126 56.3
CDE04G2617 Ceratophyllum demersum HOM05D003388 ORTHO05D003616 2.2e-24 115.9 122 51.6
CDE07G1327 Ceratophyllum demersum HOM05D003388 ORTHO05D003616 2.2e-24 115.9 121 50.4
Manes.05G105000 Manihot esculenta HOM05D003388 ORTHO05D003616 1.6e-22 109.8 124 48.4
unitig_747.g21182 Utricularia gibba HOM05D003388 ORTHO05D003616 2.0e-20 102.8 113 49.6
Os03g0168700 Oryza sativa ssp. japonica HOM05D003388 ORTHO05D003616 5.7e-20 101.3 121 44.6
Zm00001eb005310 Zea mays HOM05D003388 ORTHO05D003616 8.2e-19 97.4 120 45.0
HanXRQChr08g0210731 Helianthus annuus HOM05D003388 ORTHO05D003616 3.1e-18 95.5 73 64.4
vmacro10858 Vaccinium macrocarpon HOM05D003388 ORTHO05D003616 4.5e-17 91.7 79 63.3
ATR0564G546 Amborella trichopoda HOM05D003388 ORTHO05D003616 9.4e-15 84.0 133 41.4
HPP92_007854 Vanilla planifolia HOM05D003388 ORTHO05D003616 1.2e-14 83.6 113 46.0
vmacro07343 Vaccinium macrocarpon HOM05D000183 ORTHO05D003616 1.8e-10 69.7 120 38.3
Sabra10G0126300 Salix brachista HOM05D003388 ORTHO05D003616 7.7e-09 64.3 52 57.7
DCAR_012089 Daucus carota HOM05D000522 ORTHO05D004380 3.6e-06 55.5 105 41.0


User provided reference genes

Program Settings