Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G2082 Fragaria x ananassa HOM05D006680 ORTHO05D008206 1.2e-59 233.0 121 100.0
FAN12G3601 Fragaria x ananassa HOM05D006680 ORTHO05D008206 1.2e-59 233.0 121 100.0
FAN17G1034 Fragaria x ananassa HOM05D006680 ORTHO05D008206 1.2e-59 233.0 121 100.0
FvH4_4g18340 Fragaria vesca HOM05D006680 ORTHO05D008206 2.6e-59 231.9 121 99.2
FAN12G3976 Fragaria x ananassa HOM05D006680 ORTHO05D008206 7.7e-59 230.3 121 99.2
RcHm_v2.0_Chr4g0422811 Rosa chinensis HOM05D006680 ORTHO05D008206 3.6e-56 221.5 121 94.2
Prupe.1G134500 Prunus persica HOM05D006680 ORTHO05D008206 2.9e-50 201.8 121 84.3
MD13G1167200 Malus domestica HOM05D006680 ORTHO05D008206 6.8e-47 190.7 120 78.3
A03p34950 Brassica napus HOM05D006680 ORTHO05D008206 2.8e-45 185.3 123 74.8
C03p42530 Brassica napus HOM05D006680 ORTHO05D008206 2.8e-45 185.3 123 74.8
BolC3t16523H Brassica oleracea HOM05D006680 ORTHO05D008206 2.8e-45 185.3 123 74.8
BraA03t12675Z Brassica rapa HOM05D006680 ORTHO05D008206 2.8e-45 185.3 123 74.8
BcaC05g29822 Brassica carinata HOM05D006680 ORTHO05D008206 3.1e-44 181.8 123 75.6
BolC5t34701H Brassica oleracea HOM05D006680 ORTHO05D008206 3.1e-44 181.8 123 75.6
Gohir.A10G164900 Gossypium hirsutum HOM05D006680 ORTHO05D008206 9.1e-44 180.3 116 74.1
Gohir.D10G171100 Gossypium hirsutum HOM05D006680 ORTHO05D008206 9.1e-44 180.3 116 74.1
Gorai.011G191100 Gossypium raimondii HOM05D006680 ORTHO05D008206 9.1e-44 180.3 116 74.1
CiPaw.01G147500 Carya illinoinensis HOM05D006680 ORTHO05D008206 1.6e-43 179.5 115 79.1
THA.LOC104818922 Tarenaya hassleriana HOM05D006680 ORTHO05D008206 2.7e-43 178.7 119 73.9
Cpa.g.sc16.184 Carica papaya HOM05D006680 ORTHO05D008206 3.5e-43 178.3 120 75.0
A05p41250 Brassica napus HOM05D006680 ORTHO05D008206 4.5e-43 177.9 122 73.0
TWI09G0327 Tripterygium wilfordii HOM05D006680 ORTHO05D008206 5.9e-43 177.6 118 72.9
Ca_21488_v3 Cicer arietinum L. HOM05D006680 ORTHO05D008206 7.7e-43 177.2 120 73.3
BraA05t22848Z Brassica rapa HOM05D006680 ORTHO05D008206 1.0e-42 176.8 111 77.5
Duzib151G0306 Durio zibethinus HOM05D006680 ORTHO05D008206 1.0e-42 176.8 117 75.2
Ciclev10006049m.g Citrus clementina HOM05D006680 ORTHO05D008206 1.3e-42 176.4 115 76.5
Potri.008G221000 Populus trichocarpa HOM05D006680 ORTHO05D008206 1.3e-42 176.4 116 73.3
Thecc.04G286300 Theobroma cacao HOM05D006680 ORTHO05D008206 1.3e-42 176.4 116 75.9
Manes.03G196700 Manihot esculenta HOM05D006680 ORTHO05D008206 1.7e-42 176.0 115 74.8
VMungo1215G2846 Vigna mungo HOM05D006680 ORTHO05D008206 1.7e-42 176.0 114 75.4
Glyma.07G246700 Glycine max HOM05D006680 ORTHO05D008206 2.2e-42 175.6 122 69.7
Manes.15G011600 Manihot esculenta HOM05D006680 ORTHO05D008206 2.9e-42 175.3 119 73.9
QL06p009590 Quercus lobata HOM05D006680 ORTHO05D008206 3.8e-42 174.9 115 77.4
Sabra10G0008200 Salix brachista HOM05D006680 ORTHO05D008206 3.8e-42 174.9 115 77.4
Gorai.006G261900 Gossypium raimondii HOM05D006680 ORTHO05D008206 5.0e-42 174.5 117 71.8
Gohir.A09G238300 Gossypium hirsutum HOM05D006680 ORTHO05D008206 6.5e-42 174.1 117 71.8
Gohir.D09G239200 Gossypium hirsutum HOM05D006680 ORTHO05D008206 8.5e-42 173.7 117 71.8
Potri.010G013100 Populus trichocarpa HOM05D006680 ORTHO05D008206 1.1e-41 173.3 112 76.8
Cc03_g01760 Coffea canephora HOM05D006680 ORTHO05D008206 1.5e-41 172.9 112 76.8
ClCG00G005610 Citrullus lanatus HOM05D006680 ORTHO05D008206 1.9e-41 172.6 115 73.9
Duzib212G0294 Durio zibethinus HOM05D006680 ORTHO05D008206 1.9e-41 172.6 117 72.6
CiPaw.02G082300 Carya illinoinensis HOM05D006680 ORTHO05D008206 3.2e-41 171.8 115 74.8
Atru.chr4.2870 Acer truncatum HOM05D006680 ORTHO05D008206 7.2e-41 170.6 118 72.9
Dinv29759 Davidia involucrata HOM05D006680 ORTHO05D008206 7.2e-41 170.6 109 78.0
Peaxi162Scf00246g00103 Petunia axillaris HOM05D006680 ORTHO05D008206 9.5e-41 170.2 117 74.4
Lalb_Chr13g0303561 Lupinus albus HOM05D006680 ORTHO05D008206 1.6e-40 169.5 112 75.0
Nitab4.5_0002761g0070 Nicotiana tabacum HOM05D006680 ORTHO05D008206 2.1e-40 169.1 115 73.0
CAN.G129.31 Capsicum annuum HOM05D006680 ORTHO05D008206 8.0e-40 167.2 118 72.9
Medtr4g120020 Medicago truncatula HOM05D006680 ORTHO05D008206 1.0e-39 166.8 119 69.7
Nitab4.5_0003466g0010 Nicotiana tabacum HOM05D006680 ORTHO05D008206 2.3e-39 165.6 120 71.7
DCAR_027070 Daucus carota HOM05D006680 ORTHO05D008206 1.2e-38 163.3 119 68.9
Oeu001107.1 Olea europaea HOM05D006680 ORTHO05D008206 2.0e-38 162.5 115 73.9
Migut.G00148 Erythranthe guttata HOM05D006680 ORTHO05D008206 2.6e-38 162.2 118 72.9
Lalb_Chr07g0177791 Lupinus albus HOM05D006680 ORTHO05D008206 2.6e-38 162.2 110 72.7
PGSC0003DMG400004705 Solanum tuberosum HOM05D006680 ORTHO05D008206 2.6e-38 162.2 121 69.4
Sopen01g028370 Solanum pennellii HOM05D006680 ORTHO05D008206 3.4e-38 161.8 118 70.3
PGSC0003DMG400011317 Solanum tuberosum HOM05D006680 ORTHO05D008206 5.7e-38 161.0 118 68.6
DCAR_002469 Daucus carota HOM05D006680 ORTHO05D008206 7.5e-38 160.6 119 70.6
Lj4g0016566 Lotus japonicus HOM05D006680 ORTHO05D008206 7.5e-38 160.6 95 84.2
Oeu063359.1 Olea europaea HOM05D006680 ORTHO05D008206 1.3e-37 159.8 115 73.0
MSTRG.3906 Avicennia marina HOM05D006680 ORTHO05D008206 2.2e-37 159.1 117 70.1
Thhalv10021931m.g Eutrema salsugineum HOM05D006680 ORTHO05D008206 2.2e-37 159.1 123 65.0
Peaxi162Scf00646g00027 Petunia axillaris HOM05D006680 ORTHO05D008206 2.2e-37 159.1 120 69.2
Solyc12g099500.2 Solanum lycopersicum HOM05D006680 ORTHO05D008206 2.2e-37 159.1 119 68.9
Sopen12g034170 Solanum pennellii HOM05D006680 ORTHO05D008206 2.2e-37 159.1 119 68.9
Hma1.2p1_1185F.1_g265000 Hydrangea macrophylla HOM05D006680 ORTHO05D008206 3.7e-37 158.3 121 68.6
Lsat_1_v5_gn_6_95660 Lactuca sativa HOM05D006680 ORTHO05D008206 3.7e-37 158.3 120 66.7
Aqoxy2G02951 Aquilegia oxysepala HOM05D006680 ORTHO05D008206 4.9e-37 157.9 120 65.0
CAN.G484.39 Capsicum annuum HOM05D006680 ORTHO05D008206 7.0e-36 154.1 116 66.4
TAR370G0002 Trochodendron aralioides HOM05D006680 ORTHO05D008206 7.0e-36 154.1 113 69.0
Psat4g026840 Pisum sativum HOM05D006680 ORTHO05D008206 1.6e-35 152.9 95 77.9
Carub.0003s0642 Capsella rubella HOM05D006680 ORTHO05D008206 2.0e-35 152.5 96 77.1
ECA240G4018 Erigeron canadensis HOM05D006680 ORTHO05D008206 2.0e-35 152.5 110 67.3
Nn4g25792 Nelumbo nucifera HOM05D006680 ORTHO05D008206 2.0e-35 152.5 121 65.3
MBI19_g25353_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 3.5e-35 151.8 113 65.5
CARHR081510 Cardamine hirsuta HOM05D006680 ORTHO05D008206 4.5e-35 151.4 97 75.3
SGA_v2.0_scaffold67G22622 Striga asiatica HOM05D006680 ORTHO05D008206 4.5e-35 151.4 118 66.1
AT3G06890 Arabidopsis thaliana HOM05D006680 ORTHO05D008206 5.9e-35 151.0 98 75.5
AL3G18020 Arabidopsis lyrata HOM05D006680 ORTHO05D008206 1.0e-34 150.2 98 75.5
Sp3g05850 Schrenkiella parvula HOM05D006680 ORTHO05D008206 1.0e-34 150.2 96 78.1
TPR.G3164 Trifolium pratense HOM05D006680 ORTHO05D008206 2.3e-34 149.1 95 75.8
CSS0014864 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 2.9e-34 148.7 116 69.8
Sed0015603 Sechium edule HOM05D006680 ORTHO05D008206 2.9e-34 148.7 115 65.2
CSS0010580 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 8.6e-34 147.1 116 69.8
Sc19g0005290 Simmondsia chinensis HOM05D006680 ORTHO05D008206 1.1e-33 146.7 113 68.1
Sc19g0005370 Simmondsia chinensis HOM05D006680 ORTHO05D008206 1.1e-33 146.7 113 68.1
Nn3g21479 Nelumbo nucifera HOM05D006680 ORTHO05D008206 3.3e-33 145.2 109 68.8
Ah.08g214570 Amaranthus hybridus HOM05D006680 ORTHO05D008206 5.6e-33 144.4 112 67.9
MD16G1168200 Malus domestica HOM05D006680 ORTHO05D008206 7.3e-33 144.1 123 65.9
CANSAT78G1139 Cannabis sativa HOM05D006680 ORTHO05D008206 9.5e-33 143.7 92 75.0
DCAR_030521 Daucus carota HOM05D006680 ORTHO05D008206 9.5e-33 143.7 116 65.5
PSO832G1781 Papaver somniferum HOM05D006680 ORTHO05D008206 1.6e-32 142.9 123 64.2
Phvul.003G097003 Phaseolus vulgaris HOM05D006680 ORTHO05D008206 2.8e-32 142.1 95 73.7
PSO210G6323 Papaver somniferum HOM05D006680 ORTHO05D008206 4.7e-32 141.4 123 65.0
HanXRQChr13g0419971 Helianthus annuus HOM05D006680 ORTHO05D008206 1.4e-31 139.8 117 61.5
MBI18_g06870_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 1.8e-31 139.4 113 63.7
PGR004G0310 Punica granatum HOM05D006680 ORTHO05D008206 2.3e-31 139.0 118 60.2
AUR62040379 Chenopodium quinoa HOM05D006680 ORTHO05D008206 8.9e-31 137.1 112 62.5
Sabra10G0008300 Salix brachista HOM05D006680 ORTHO05D008206 2.2e-29 132.5 108 65.7
Os03g0343800 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 7.0e-28 127.5 114 64.9
PGR031G3343 Punica granatum HOM05D006680 ORTHO05D008206 9.2e-28 127.1 115 53.9
PSO170G5007 Papaver somniferum HOM05D006680 ORTHO05D008206 5.9e-27 124.4 100 68.0
PSO017G4993 Papaver somniferum HOM05D006680 ORTHO05D008206 1.3e-26 123.2 100 67.0
HanXRQChr03g0089341 Helianthus annuus HOM05D006680 ORTHO05D008206 9.5e-25 117.1 117 53.8
Zm00001eb124100 Zea mays HOM05D006680 ORTHO05D008206 1.6e-24 116.3 115 53.9
Rhsim04G0223700 Rhododendron simsii HOM05D006680 ORTHO05D008206 2.1e-24 115.9 90 65.6
Rhsim09G0007300 Rhododendron simsii HOM05D006680 ORTHO05D008206 2.1e-24 115.9 90 65.6
HPP92_000110 Vanilla planifolia HOM05D006680 ORTHO05D008206 2.8e-24 115.5 110 54.5
Zm00001eb016470 Zea mays HOM05D006680 ORTHO05D008206 2.8e-24 115.5 115 60.9
Thecc.05G268700 Theobroma cacao HOM05D006680 ORTHO05D008206 1.8e-23 112.8 88 67.0
Thecc.09G272700 Theobroma cacao HOM05D006680 ORTHO05D008206 1.8e-23 112.8 82 68.3
Eucgr.H03932 Eucalyptus grandis HOM05D006680 ORTHO05D008206 3.1e-23 112.1 121 52.1
ATR0796G044 Amborella trichopoda HOM05D006680 ORTHO05D008206 2.6e-22 109.0 120 48.3
unitig_32.g11869 Utricularia gibba HOM05D006680 ORTHO05D008206 4.9e-21 104.8 118 48.3
Zm00001eb394930 Zea mays HOM05D006680 ORTHO05D008206 1.4e-20 103.2 92 64.1
TAR633G0386 Trochodendron aralioides HOM05D006680 ORTHO05D008206 3.3e-17 92.0 121 46.3
Os07g0673801 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 4.9e-13 78.2 97 48.5
SalBow5G0837 Salvia bowleyana HOM05D006680 ORTHO05D008206 7.8e-11 70.9 118 35.6
MELO3C006671.2 Cucumis melo HOM05D006680 ORTHO05D008206 6.6e-10 67.8 51 64.7


User provided reference genes

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