Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G0986 Fragaria x ananassa HOM05D008144 ORTHO05D010081 0.0e+00 1875.9 1011 100.0
FAN17G1249 Fragaria x ananassa HOM05D008144 ORTHO05D010081 0.0e+00 1875.9 1011 100.0
FvH4_4g01740 Fragaria vesca HOM05D008144 ORTHO05D010081 0.0e+00 1756.5 980 94.9
FAN12G1940 Fragaria x ananassa HOM05D008144 ORTHO05D010081 0.0e+00 1739.9 983 94.2
FAN22G0807 Fragaria x ananassa HOM05D008144 ORTHO05D010081 0.0e+00 1668.7 998 89.4
RcHm_v2.0_Chr4g0388601 Rosa chinensis HOM05D008144 ORTHO05D010081 6.3e-239 831.6 676 71.3
Prupe.1G023500 Prunus persica HOM05D008144 ORTHO05D010081 4.6e-157 559.7 784 48.5
MD13G1201700 Malus domestica HOM05D008144 ORTHO05D010081 3.0e-124 450.7 786 43.3
Potri.008G159200 Populus trichocarpa HOM05D008144 ORTHO05D010081 2.5e-62 245.0 829 32.0
Sabra08G0121300 Salix brachista HOM05D008144 ORTHO05D010081 2.2e-58 231.9 796 31.5
Potri.010G081000 Populus trichocarpa HOM05D008144 ORTHO05D010081 7.1e-57 226.9 823 31.2
Duzib151G0265 Durio zibethinus HOM05D008144 ORTHO05D010081 4.0e-52 211.1 1152 26.8
QL06p000574 Quercus lobata HOM05D008144 ORTHO05D010081 1.2e-51 209.5 1052 27.9
Dinv14059 Davidia involucrata HOM05D008144 ORTHO05D010081 4.9e-50 204.1 791 29.7
CiPaw.01G194000 Carya illinoinensis HOM05D008144 ORTHO05D010081 6.4e-50 203.8 895 30.2
MD16G1202000 Malus domestica HOM05D008144 ORTHO05D010081 1.6e-48 199.1 283 51.2
Thecc.04G241000 Theobroma cacao HOM05D008144 ORTHO05D010081 3.1e-44 184.9 1034 26.4
Ciclev10004664m.g Citrus clementina HOM05D008144 ORTHO05D010081 9.3e-41 173.3 570 31.4
GSVIVG01018069001 Vitis vinifera HOM05D008144 ORTHO05D010081 1.8e-39 169.1 779 29.1
Haze_11249 Corylus avellana HOM05D008144 ORTHO05D010081 5.1e-39 167.5 754 29.3
CANSAT78G0891 Cannabis sativa HOM05D008144 ORTHO05D010081 6.7e-39 167.2 547 32.2
CSS0041819 Camellia sinensis var. sinensis HOM05D008144 ORTHO05D010081 8.7e-39 166.8 776 28.2
Duzib212G0503 Durio zibethinus HOM05D008144 ORTHO05D010081 5.7e-38 164.1 1091 26.2
Manes.03G171900 Manihot esculenta HOM05D008144 ORTHO05D010081 2.8e-37 161.8 1162 24.3
Atru.chr4.2325 Acer truncatum HOM05D008144 ORTHO05D010081 1.6e-32 146.0 397 31.2
COL.COLO4_13184 Corchorus olitorius HOM05D008144 ORTHO05D010081 8.5e-26 123.6 1100 25.0
Gohir.D02G041500 Gossypium hirsutum HOM05D008144 ORTHO05D010081 3.6e-24 118.2 1057 24.2
Gorai.005G045900 Gossypium raimondii HOM05D008144 ORTHO05D010081 7.9e-24 117.1 1046 24.1
Gohir.A02G034700 Gossypium hirsutum HOM05D008144 ORTHO05D010081 3.0e-23 115.2 1048 23.3
Medtr1g041300 Medicago truncatula HOM05D008144 ORTHO05D010081 1.3e-21 109.8 337 33.2
TWI73G1171 Tripterygium wilfordii HOM05D008144 ORTHO05D010081 1.7e-21 109.4 846 26.1
TAR362G0851 Trochodendron aralioides HOM05D008144 ORTHO05D010081 2.4e-20 105.5 1030 25.5
Glyma.02G002200 Glycine max HOM05D008144 ORTHO05D010081 7.0e-20 104.0 951 23.9
Phvul.007G278800 Phaseolus vulgaris HOM05D008144 ORTHO05D010081 1.5e-19 102.8 268 34.3
Cpa.g.sc44.134 Carica papaya HOM05D008144 ORTHO05D010081 2.9e-18 98.6 279 31.9
Eucgr.H03407 Eucalyptus grandis HOM05D008144 ORTHO05D010081 5.0e-18 97.8 285 30.5
Psat6g103240 Pisum sativum HOM05D008144 ORTHO05D010081 9.4e-17 93.6 219 36.5
MD16G1201900 Malus domestica HOM05D008144 ORTHO05D010081 8.0e-16 90.5 77 68.8
ClCG05G004780 Citrullus lanatus HOM05D025894 ORTHO05D010081 1.8e-15 89.4 541 26.8
Dinv44593 Davidia involucrata HOM05D008144 ORTHO05D010081 1.8e-15 89.4 253 33.6
CsaV3_3G012810 Cucumis sativus L. HOM05D025894 ORTHO05D010081 8.8e-15 87.0 165 38.8
Lalb_Chr03g0037551 Lupinus albus HOM05D008144 ORTHO05D010081 5.7e-14 84.3 1069 23.9
TPR.G32783 Trifolium pratense HOM05D008144 ORTHO05D010081 1.1e-12 80.1 1114 23.3
Dinv14057 Davidia involucrata HOM05D008144 ORTHO05D010081 5.3e-12 77.8 174 39.7
Lj6g0001132 Lotus japonicus HOM05D008144 ORTHO05D010081 5.3e-12 77.8 297 29.6
THA.LOC104809081 Tarenaya hassleriana HOM05D011210 ORTHO05D013204 9.1e-12 77.0 176 37.5
Sed0006870 Sechium edule HOM05D025894 ORTHO05D010081 1.2e-11 76.6 394 28.4
VMungo0720G0769 Vigna mungo HOM05D008144 ORTHO05D010081 1.2e-11 76.6 1015 23.3
Nitab4.5_0000224g0080 Nicotiana tabacum HOM05D014400 ORTHO05D010081 3.5e-11 75.1 751 24.2
Dinv33607 Davidia involucrata HOM05D008144 ORTHO05D010081 5.0e-10 71.2 139 36.0
MELO3C006492.2 Cucumis melo HOM05D025894 ORTHO05D010081 6.5e-10 70.9 542 25.5
PGR004G2389 Punica granatum HOM05D008144 ORTHO05D010081 1.1e-09 70.1 798 23.7
PGSC0003DMG400006073 Solanum tuberosum HOM05D014400 ORTHO05D010081 1.5e-09 69.7 762 23.5
Solyc09g082900.3 Solanum lycopersicum HOM05D014400 ORTHO05D010081 7.2e-09 67.4 767 23.7
Sopen09g031740 Solanum pennellii HOM05D014400 ORTHO05D010081 9.4e-09 67.0 768 22.7
Actinidia04502 Actinidia chinensis HOM05D008144 ORTHO05D010081 1.0e-07 63.5 276 27.9
arahy.Tifrunner.gnm1.ann1.9W8MHJ Arachis hypogaea HOM05D048597 ORTHO05D038870 1.8e-07 62.8 108 37.0
Nn1g02499 Nelumbo nucifera HOM05D008144 ORTHO05D010081 6.7e-07 60.8 503 26.8
Nitab4.5_0002118g0020 Nicotiana tabacum HOM05D014400 ORTHO05D010081 6.7e-07 60.8 572 23.6
Migut.N00217 Erythranthe guttata HOM05D014400 ORTHO05D010081 8.8e-07 60.5 183 31.7
Sp7g12760 Schrenkiella parvula HOM05D011210 ORTHO05D013204 1.2e-06 60.1 178 34.8
Sabra10G0062200 Salix brachista HOM05D008144 ORTHO05D010081 5.7e-06 57.8 124 40.3
SGA_v2.0_scaffold308G48120 Striga asiatica HOM05D014400 ORTHO05D010081 9.7e-06 57.0 277 27.8


User provided reference genes

Program Settings