Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G0915 Fragaria x ananassa HOM05D000747 ORTHO05D015677 1.1e-89 333.2 162 100.0
FAN07G1366 Fragaria x ananassa HOM05D000747 ORTHO05D015677 3.8e-45 185.3 93 95.7
FAN12G0016 Fragaria x ananassa HOM05D000747 ORTHO05D015677 6.5e-45 184.5 93 95.7
FAN12G0094 Fragaria x ananassa HOM05D000747 ORTHO05D015677 1.9e-44 183.0 93 94.6
FAN22G2336 Fragaria x ananassa HOM05D000747 ORTHO05D015677 3.4e-38 162.2 93 86.0
Glyma.02G216000 Glycine max HOM05D000747 ORTHO05D001683 1.1e-23 114.0 115 58.3
FvH4_5g34290 Fragaria vesca HOM05D000747 ORTHO05D001683 1.8e-23 113.2 115 60.0
FAN04G1446 Fragaria x ananassa HOM05D000747 ORTHO05D001683 1.8e-23 113.2 115 60.0
FAN18G0248 Fragaria x ananassa HOM05D000747 ORTHO05D001683 1.8e-23 113.2 115 60.0
MD15G1388600 Malus domestica HOM05D000747 ORTHO05D001683 2.4e-23 112.8 115 57.4
RcHm_v2.0_Chr7g0234861 Rosa chinensis HOM05D000747 ORTHO05D001683 2.4e-23 112.8 115 60.0
Phvul.008G183200 Phaseolus vulgaris HOM05D000747 ORTHO05D001683 3.1e-23 112.5 138 52.9
Prupe.1G535000 Prunus persica HOM05D000747 ORTHO05D001683 4.1e-23 112.1 115 58.3
vmacro04636 Vaccinium macrocarpon HOM05D000747 ORTHO05D001683 4.1e-23 112.1 94 66.0
Glyma.14G183000 Glycine max HOM05D000747 ORTHO05D001683 1.6e-22 110.2 115 56.5
MD08G1203200 Malus domestica HOM05D000747 ORTHO05D001683 4.5e-22 108.6 115 55.7
arahy.Tifrunner.gnm1.ann1.3KGV08 Arachis hypogaea HOM05D000747 ORTHO05D001683 1.0e-21 107.5 114 55.3
arahy.Tifrunner.gnm1.ann1.CI62AJ Arachis hypogaea HOM05D000747 ORTHO05D001683 1.0e-21 107.5 114 55.3
GSVIVG01009208001 Vitis vinifera HOM05D000747 ORTHO05D001683 1.0e-21 107.5 113 58.4
Ciclev10000001m.g Citrus clementina HOM05D000747 ORTHO05D001683 1.7e-21 106.7 115 55.7
Lalb_Chr08g0242601 Lupinus albus HOM05D000747 ORTHO05D001683 1.7e-21 106.7 94 62.8
Cpa.g.sc21.42 Carica papaya HOM05D000747 ORTHO05D001683 2.2e-21 106.3 94 63.8
Rhsim07G0213300 Rhododendron simsii HOM05D000747 ORTHO05D001683 2.2e-21 106.3 94 64.9
Manes.05G189200 Manihot esculenta HOM05D000747 ORTHO05D001683 2.9e-21 105.9 115 56.5
Aa31LG4G9560 Aethionema arabicum HOM05D000747 ORTHO05D001683 5.0e-21 105.1 117 55.6
MBI16_g07279_MAGBIO Magnolia biondii HOM05D000747 ORTHO05D001683 5.0e-21 105.1 94 62.8
COL.COLO4_35278 Corchorus olitorius HOM05D000747 ORTHO05D001683 6.5e-21 104.8 94 62.8
LjContig00408g0027979 Lotus japonicus HOM05D000747 ORTHO05D001683 6.5e-21 104.8 115 54.8
Psat2g064840 Pisum sativum HOM05D000747 ORTHO05D001683 6.5e-21 104.8 115 53.9
Thecc.08G073800 Theobroma cacao HOM05D000747 ORTHO05D001683 6.5e-21 104.8 94 62.8
Ca_05473_v3 Cicer arietinum L. HOM05D000747 ORTHO05D001683 8.5e-21 104.4 115 53.9
Lalb_Chr23g0269951 Lupinus albus HOM05D000747 ORTHO05D001683 8.5e-21 104.4 94 61.7
Medtr5g066710 Medicago truncatula HOM05D000747 ORTHO05D001683 8.5e-21 104.4 115 53.9
THA.LOC104799856 Tarenaya hassleriana HOM05D000747 ORTHO05D001683 8.5e-21 104.4 94 62.8
TPR.G30874 Trifolium pratense HOM05D000747 ORTHO05D001683 8.5e-21 104.4 115 53.0
Gohir.A05G218400 Gossypium hirsutum HOM05D000747 ORTHO05D001683 1.1e-20 104.0 94 61.7
Manes.18G057015 Manihot esculenta HOM05D000747 ORTHO05D001683 1.1e-20 104.0 115 54.8
Potri.002G110500 Populus trichocarpa HOM05D000747 ORTHO05D001683 1.1e-20 104.0 113 55.8
Sabra02G0087000 Salix brachista HOM05D000747 ORTHO05D001683 1.1e-20 104.0 113 55.8
TPR.G6372 Trifolium pratense HOM05D000747 ORTHO05D001683 1.1e-20 104.0 94 61.7
Gohir.D05G221100 Gossypium hirsutum HOM05D000747 ORTHO05D001683 1.5e-20 103.6 94 61.7
Gorai.009G228200 Gossypium raimondii HOM05D000747 ORTHO05D001683 1.5e-20 103.6 94 61.7
Lsat_1_v5_gn_1_2001 Lactuca sativa HOM05D000747 ORTHO05D001683 1.5e-20 103.6 94 61.7
TWI12G0371 Tripterygium wilfordii HOM05D000747 ORTHO05D001683 1.5e-20 103.6 115 53.0
Duzib093G1788 Durio zibethinus HOM05D000747 ORTHO05D001683 1.9e-20 103.2 94 61.7
Atru.chr13.975 Acer truncatum HOM05D000747 ORTHO05D001683 2.5e-20 102.8 92 64.1
arahy.Tifrunner.gnm1.ann1.I0605Y Arachis hypogaea HOM05D000747 ORTHO05D001683 3.2e-20 102.4 94 63.8
arahy.Tifrunner.gnm1.ann1.PS3G0C Arachis hypogaea HOM05D000747 ORTHO05D001683 3.2e-20 102.4 94 63.8
CSS0007399 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 3.2e-20 102.4 94 62.8
Haze_22488 Corylus avellana HOM05D000747 ORTHO05D001683 3.2e-20 102.4 94 60.6
Actinidia10269 Actinidia chinensis HOM05D000747 ORTHO05D001683 4.2e-20 102.1 94 62.8
CiPaw.07G163100 Carya illinoinensis HOM05D000747 ORTHO05D001683 4.2e-20 102.1 115 53.9
AUR62019112 Chenopodium quinoa HOM05D000747 ORTHO05D001683 4.2e-20 102.1 94 62.8
QL09p018620 Quercus lobata HOM05D000747 ORTHO05D001683 4.2e-20 102.1 115 53.9
Duzib041G0164 Durio zibethinus HOM05D000747 ORTHO05D001683 5.5e-20 101.7 94 60.6
Glyma.06G098700 Glycine max HOM05D000747 ORTHO05D001683 5.5e-20 101.7 94 61.7
Medtr3g099777 Medicago truncatula HOM05D000747 ORTHO05D001683 5.5e-20 101.7 115 52.2
TAR625G1466 Trochodendron aralioides HOM05D000747 ORTHO05D001683 5.5e-20 101.7 115 54.8
CiPaw.08G057100 Carya illinoinensis HOM05D000747 ORTHO05D001683 7.2e-20 101.3 115 53.9
Dinv42592 Davidia involucrata HOM05D000747 ORTHO05D001683 7.2e-20 101.3 94 62.8
Dinv44878 Davidia involucrata HOM05D000747 ORTHO05D001683 7.2e-20 101.3 94 62.8
Lalb_Chr17g0344621 Lupinus albus HOM05D000747 ORTHO05D001683 7.2e-20 101.3 115 53.0
TWI56G1479 Tripterygium wilfordii HOM05D000747 ORTHO05D001683 7.2e-20 101.3 115 52.2
Cfa013814 Carpinus fangiana HOM05D000747 ORTHO05D001683 9.4e-20 100.9 94 59.6
Hma1.2p1_0010F.1_g006490 Hydrangea macrophylla HOM05D000747 ORTHO05D001683 1.2e-19 100.5 99 57.6
MBI16_g27902_MAGBIO Magnolia biondii HOM05D000747 ORTHO05D001683 1.2e-19 100.5 94 61.7
Cc10_g08380 Coffea canephora HOM05D000747 ORTHO05D001683 2.1e-19 99.8 94 60.6
Sc15g0003080 Simmondsia chinensis HOM05D000747 ORTHO05D001683 2.1e-19 99.8 115 53.9
Aqoxy5G01343 Aquilegia oxysepala HOM05D000747 ORTHO05D001683 2.7e-19 99.4 94 60.6
AL8G23550 Arabidopsis lyrata HOM05D000747 ORTHO05D001683 2.7e-19 99.4 94 61.7
Lalb_Chr04g0252751 Lupinus albus HOM05D000747 ORTHO05D001683 2.7e-19 99.4 124 47.6
BcaB07g31166 Brassica carinata HOM05D000747 ORTHO05D001683 3.6e-19 99.0 94 59.6
AUR62014369 Chenopodium quinoa HOM05D000747 ORTHO05D001683 3.6e-19 99.0 94 61.7
PSO170G1658 Papaver somniferum HOM05D000747 ORTHO05D001683 3.6e-19 99.0 87 60.9
PSO210G0754 Papaver somniferum HOM05D000747 ORTHO05D001683 3.6e-19 99.0 108 52.8
CARHR259180 Cardamine hirsuta HOM05D000747 ORTHO05D001683 4.7e-19 98.6 94 60.6
Sp6g10940 Schrenkiella parvula HOM05D000747 ORTHO05D001683 4.7e-19 98.6 94 61.7
BcaC04g22166 Brassica carinata HOM05D000747 ORTHO05D001683 6.1e-19 98.2 94 59.6
BcaC04g22167 Brassica carinata HOM05D000747 ORTHO05D001683 6.1e-19 98.2 94 59.6
C09p22560 Brassica napus HOM05D000747 ORTHO05D001683 6.1e-19 98.2 94 59.6
C09p22600 Brassica napus HOM05D000747 ORTHO05D001683 6.1e-19 98.2 94 59.6
BolC9t55169H Brassica oleracea HOM05D000747 ORTHO05D001683 6.1e-19 98.2 94 59.6
CSS0000386 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 6.1e-19 98.2 94 61.7
Gohir.D05G266800 Gossypium hirsutum HOM05D000747 ORTHO05D001683 6.1e-19 98.2 115 52.2
Gohir.D06G030100 Gossypium hirsutum HOM05D000747 ORTHO05D001683 6.1e-19 98.2 94 60.6
Gorai.009G278900 Gossypium raimondii HOM05D000747 ORTHO05D001683 6.1e-19 98.2 115 52.2
Gorai.010G033100 Gossypium raimondii HOM05D000747 ORTHO05D001683 6.1e-19 98.2 94 60.6
Nitab4.5_0009446g0010 Nicotiana tabacum HOM05D000747 ORTHO05D001683 6.1e-19 98.2 94 59.6
HanXRQChr02g0045911 Helianthus annuus HOM05D000747 ORTHO05D001683 8.0e-19 97.8 99 56.6
Phvul.009G034900 Phaseolus vulgaris HOM05D000747 ORTHO05D001683 8.0e-19 97.8 92 60.9
Duzib116G0124 Durio zibethinus HOM05D000747 ORTHO05D001683 1.0e-18 97.4 94 57.4
Nitab4.5_0000131g0010 Nicotiana tabacum HOM05D000747 ORTHO05D001683 1.0e-18 97.4 94 58.5
Carub.0008s0954 Capsella rubella HOM05D000747 ORTHO05D001683 1.4e-18 97.1 94 60.6
Lj4C86T7 Lonicera japonica HOM05D000747 ORTHO05D001683 1.4e-18 97.1 94 60.6
Glyma.04G096900 Glycine max HOM05D000747 ORTHO05D001683 1.8e-18 96.7 94 58.5
Lj1g0021401 Lotus japonicus HOM05D000747 ORTHO05D001683 1.8e-18 96.7 115 52.2
ClCG08G011550 Citrullus lanatus HOM05D000747 ORTHO05D001683 2.3e-18 96.3 115 52.2
Gohir.A06G030900 Gossypium hirsutum HOM05D000747 ORTHO05D001683 2.3e-18 96.3 94 59.6
MSTRG.24981 Avicennia marina HOM05D000747 ORTHO05D001683 3.0e-18 95.9 94 60.6
A09p18070 Brassica napus HOM05D000747 ORTHO05D001683 3.0e-18 95.9 94 57.4
A09p18090 Brassica napus HOM05D000747 ORTHO05D001683 3.0e-18 95.9 94 57.4
BraA09t37439Z Brassica rapa HOM05D000747 ORTHO05D001683 3.0e-18 95.9 94 57.4
BraA09t37447Z Brassica rapa HOM05D000747 ORTHO05D001683 3.0e-18 95.9 94 57.4
Sed0015542 Sechium edule HOM05D000747 ORTHO05D001683 3.0e-18 95.9 137 46.0
Hund26826 Selenicereus undatus HOM05D000747 ORTHO05D001683 4.0e-18 95.5 115 53.0
CAN.G193.8 Capsicum annuum HOM05D000747 ORTHO05D001683 5.2e-18 95.1 94 58.5
Eucgr.F02160 Eucalyptus grandis HOM05D000747 ORTHO05D001683 5.2e-18 95.1 94 57.4
Nn5g29819 Nelumbo nucifera HOM05D000747 ORTHO05D001683 5.2e-18 95.1 115 51.3
Oeu040883.2 Olea europaea HOM05D000747 ORTHO05D001683 5.2e-18 95.1 99 53.5
Psat5g049800 Pisum sativum HOM05D000747 ORTHO05D001683 5.2e-18 95.1 115 49.6
MELO3C011072.2 Cucumis melo HOM05D000747 ORTHO05D001683 6.8e-18 94.7 115 51.3
CsaV3_2G030130 Cucumis sativus L. HOM05D000747 ORTHO05D001683 6.8e-18 94.7 115 51.3
Oeu038170.1 Olea europaea HOM05D000747 ORTHO05D001683 6.8e-18 94.7 99 54.5
Sopen04g030340 Solanum pennellii HOM05D000747 ORTHO05D001683 6.8e-18 94.7 98 56.1
Ah.05g171530 Amaranthus hybridus HOM05D000747 ORTHO05D001683 8.8e-18 94.4 115 52.2
PGR031G3206 Punica granatum HOM05D000747 ORTHO05D001683 8.8e-18 94.4 94 59.6
DCAR_020028 Daucus carota HOM05D000747 ORTHO05D001683 1.2e-17 94.0 94 58.5
Sed0006720 Sechium edule HOM05D000747 ORTHO05D001683 1.2e-17 94.0 115 50.4
Lalb_Chr11g0064861 Lupinus albus HOM05D000747 ORTHO05D001683 1.5e-17 93.6 94 58.5
Nn1g05645 Nelumbo nucifera HOM05D000747 ORTHO05D001683 1.5e-17 93.6 94 58.5
Solyc04g076620.4 Solanum lycopersicum HOM05D000747 ORTHO05D001683 1.5e-17 93.6 98 55.1
Peaxi162Scf01112g00136 Petunia axillaris HOM05D000747 ORTHO05D001683 2.0e-17 93.2 94 56.4
EL10Ac1g00487 Beta vulgaris HOM05D000747 ORTHO05D001683 2.6e-17 92.8 94 60.6
SGA_v2.0_scaffold74G24548 Striga asiatica HOM05D000747 ORTHO05D001683 2.6e-17 92.8 94 56.4
HanXRQChr05g0163491 Helianthus annuus HOM05D000747 ORTHO05D001683 3.4e-17 92.4 94 57.4
TAR381G0008 Trochodendron aralioides HOM05D000747 ORTHO05D001683 3.4e-17 92.4 94 57.4
ECA247G4116 Erigeron canadensis HOM05D000747 ORTHO05D001683 5.7e-17 91.7 92 58.7
Os12g0428600 Oryza sativa ssp. japonica HOM05D000747 ORTHO05D001683 9.8e-17 90.9 115 50.4
SalBow7G0174 Salvia bowleyana HOM05D000747 ORTHO05D001683 9.8e-17 90.9 94 56.4
BcaC04g22169 Brassica carinata HOM05D000747 ORTHO05D001683 2.2e-16 89.7 85 58.8
Lsat_1_v5_gn_6_107380 Lactuca sativa HOM05D000747 ORTHO05D001683 2.8e-16 89.4 94 52.1
Gohir.A05G264300 Gossypium hirsutum HOM05D000747 ORTHO05D001683 4.1e-15 85.5 101 50.5
Zm00001eb409870 Zea mays HOM05D000747 ORTHO05D001683 7.0e-15 84.7 115 47.0
ATR0767G187 Amborella trichopoda HOM05D000747 ORTHO05D001683 4.5e-14 82.0 115 49.6
DCAR_009555 Daucus carota HOM05D000747 ORTHO05D001683 4.5e-14 82.0 94 52.1
Zm00001eb133420 Zea mays HOM05D000747 ORTHO05D001683 4.5e-14 82.0 115 46.1
CDE04G0044 Ceratophyllum demersum HOM05D000747 ORTHO05D001683 7.7e-14 81.3 87 56.3
FAN25G2566 Fragaria x ananassa HOM05D000747 ORTHO05D015677 1.3e-13 80.5 67 67.2
RcHm_v2.0_Chr7g0217651 Rosa chinensis HOM05D000747 ORTHO05D015677 8.5e-13 77.8 93 53.8
ECA247G1373 Erigeron canadensis HOM05D000583 ORTHO05D001683 2.7e-11 72.8 62 58.1
TAR256G0007 Trochodendron aralioides HOM05D000747 ORTHO05D001683 4.4e-09 65.5 51 68.6
AagrBONN_evm.TU.Sc2ySwM_344.3333 Anthoceros agrestis HOM05D000747 ORTHO05D001683 4.1e-07 58.9 99 37.4
Mapoly0090s0059 Marchantia polymorpha HOM05D000747 ORTHO05D001683 5.4e-07 58.5 97 39.2
Pp3c7_8070 Physcomitrium patens HOM05D000747 ORTHO05D001683 9.2e-07 57.8 99 34.3
Pp3c7_8076 Physcomitrium patens HOM05D000747 ORTHO05D001683 9.2e-07 57.8 99 34.3
TWI38G1048 Tripterygium wilfordii HOM05D000747 ORTHO05D001683 1.6e-06 57.0 90 38.9
Aa31LG10G330 Aethionema arabicum HOM05D000747 ORTHO05D001683 2.0e-06 56.6 99 38.4
TWI38G2292 Tripterygium wilfordii HOM05D000747 ORTHO05D001683 2.0e-06 56.6 58 50.0
SEGI_10423 Sequoiadendron giganteum HOM05D000747 ORTHO05D001683 3.5e-06 55.8 70 42.9
Migut.M01647 Erythranthe guttata HOM05D000747 ORTHO05D001683 4.5e-06 55.5 90 40.0
FAN21G2338 Fragaria x ananassa HOM05D000747 ORTHO05D015677 4.5e-06 55.5 39 74.4
SEGI_19221 Sequoiadendron giganteum HOM05D000747 ORTHO05D001683 4.5e-06 55.5 67 46.3
EL10Ac4g07551 Beta vulgaris HOM05D000747 ORTHO05D001683 5.9e-06 55.1 98 34.7
Peaxi162Scf00139g00125 Petunia axillaris HOM05D000747 ORTHO05D001683 7.7e-06 54.7 68 48.5
SGA_v2.0_scaffold171G38855 Striga asiatica HOM05D000747 ORTHO05D001683 7.7e-06 54.7 99 34.3
TAR624G0765 Trochodendron aralioides HOM05D000747 ORTHO05D001683 7.7e-06 54.7 83 38.6


User provided reference genes

Program Settings