Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G0914 Fragaria x ananassa HOM05D006250 ORTHO05D007107 6.2e-157 558.5 607 100.0
FAN22G2376 Fragaria x ananassa HOM05D006250 ORTHO05D007107 2.5e-142 510.0 607 96.4
FAN12G0989 Fragaria x ananassa HOM05D006250 ORTHO05D007107 8.1e-133 478.4 609 90.1
FvH4_4g35070 Fragaria vesca HOM05D006250 ORTHO05D007107 2.6e-131 473.4 613 93.1
FAN07G1033 Fragaria x ananassa HOM05D006250 ORTHO05D007107 5.8e-123 445.7 627 89.2
RcHm_v2.0_Chr4g0444691 Rosa chinensis HOM05D006250 ORTHO05D007107 9.7e-118 428.3 613 89.9
MD13G1086400 Malus domestica HOM05D006250 ORTHO05D007107 1.1e-92 345.1 619 83.4
MD16G1085800 Malus domestica HOM05D006250 ORTHO05D007107 3.0e-87 327.0 614 83.2
Prupe.1G260300 Prunus persica HOM05D006250 ORTHO05D007107 2.4e-84 317.4 626 81.5
Haze_12133 Corylus avellana HOM05D006250 ORTHO05D007107 4.5e-83 313.2 631 77.7
COL.COLO4_19523 Corchorus olitorius HOM05D006250 ORTHO05D007107 8.3e-77 292.4 619 78.0
Ciclev10031015m.g Citrus clementina HOM05D006250 ORTHO05D007107 3.8e-74 283.5 621 77.6
GSVIVG01020179001 Vitis vinifera HOM05D006250 ORTHO05D007107 8.6e-74 282.3 617 78.3
QL03p066863 Quercus lobata HOM05D006250 ORTHO05D007107 1.6e-72 278.1 630 77.1
Dinv31115 Davidia involucrata HOM05D006250 ORTHO05D007107 2.8e-72 277.3 631 76.7
Eucgr.B03367 Eucalyptus grandis HOM05D006250 ORTHO05D007107 6.1e-72 276.2 629 76.6
CiPaw.05G146100 Carya illinoinensis HOM05D006250 ORTHO05D007107 1.8e-71 274.6 632 77.2
Thecc.02G242000 Theobroma cacao HOM05D006250 ORTHO05D007107 5.2e-71 273.1 621 76.3
Migut.L01451 Erythranthe guttata HOM05D006250 ORTHO05D007107 8.9e-71 272.3 633 74.7
CAN.G1160.10 Capsicum annuum HOM05D006250 ORTHO05D007107 3.4e-70 270.4 620 75.0
Lalb_Chr09g0326521 Lupinus albus HOM05D006250 ORTHO05D007107 4.9e-69 266.5 615 74.6
Hma1.2p1_1049F.1_g251780 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 6.3e-69 266.2 622 76.8
Hma1.2p1_2649F.1_g326135 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 6.3e-69 266.2 622 76.8
PGSC0003DMG400015603 Solanum tuberosum HOM05D006250 ORTHO05D007107 6.3e-69 266.2 625 74.7
Sopen05g002190 Solanum pennellii HOM05D000912 ORTHO05D001232 8.3e-69 265.8 626 74.9
Solyc05g006170.4 Solanum lycopersicum HOM05D006250 ORTHO05D007107 1.1e-68 265.4 626 74.9
arahy.Tifrunner.gnm1.ann1.ST0DQ2 Arachis hypogaea HOM05D006250 ORTHO05D007107 1.8e-68 264.6 625 72.3
Cc11_g14200 Coffea canephora HOM05D006250 ORTHO05D007107 2.4e-68 264.2 626 74.0
Manes.05G091350 Manihot esculenta HOM05D006250 ORTHO05D007107 3.2e-68 263.8 616 75.3
arahy.Tifrunner.gnm1.ann1.11GRU6 Arachis hypogaea HOM05D006250 ORTHO05D007107 5.4e-68 263.1 625 72.3
Gorai.009G344900 Gossypium raimondii HOM05D006250 ORTHO05D007107 5.9e-67 259.6 615 75.8
Gohir.D05G321400 Gossypium hirsutum HOM05D006250 ORTHO05D007107 1.3e-66 258.5 615 75.8
CSS0049978 Camellia sinensis var. sinensis HOM05D006250 ORTHO05D007107 4.3e-65 253.4 625 75.7
Potri.008G193700 Populus trichocarpa HOM05D006250 ORTHO05D007107 5.6e-65 253.1 619 75.4
TWI18G0037 Tripterygium wilfordii HOM05D006250 ORTHO05D007107 1.2e-64 251.9 625 74.4
Glyma.02G029800 Glycine max HOM05D006250 ORTHO05D007107 3.6e-64 250.4 625 74.7
Duzib251G0023 Durio zibethinus HOM05D006250 ORTHO05D007107 8.0e-64 249.2 569 80.1
TPR.G13515 Trifolium pratense HOM05D006250 ORTHO05D007107 8.0e-64 249.2 567 79.4
Aa31LG2G10230 Aethionema arabicum HOM05D006250 ORTHO05D007107 3.1e-63 247.3 622 55.8
BolC8t49010H Brassica oleracea HOM05D006250 ORTHO05D007107 1.5e-62 245.0 618 75.7
Glyma.01G036200 Glycine max HOM05D006250 ORTHO05D007107 2.9e-61 240.7 625 73.1
BraA08t35306Z Brassica rapa HOM05D006250 ORTHO05D007107 3.7e-61 240.4 626 74.6
MSTRG.625 Avicennia marina HOM05D006250 ORTHO05D007107 4.9e-61 240.0 631 71.6
Gohir.A05G319200 Gossypium hirsutum HOM05D006250 ORTHO05D007107 6.4e-61 239.6 621 74.7
Lsat_1_v5_gn_3_49600 Lactuca sativa HOM05D006250 ORTHO05D007107 2.4e-60 237.7 622 75.1
BcaC07g38569 Brassica carinata HOM05D006250 ORTHO05D007107 5.4e-60 236.5 619 75.8
Lj2g0015976 Lotus japonicus HOM05D006250 ORTHO05D007107 1.6e-59 235.0 613 74.9
Aqoxy3G03090 Aquilegia oxysepala HOM05D006250 ORTHO05D007107 4.6e-59 233.4 630 71.1
SalBow2G3220 Salvia bowleyana HOM05D006250 ORTHO05D007107 1.7e-58 231.5 547 79.7
Sabra08G0147200 Salix brachista HOM05D006250 ORTHO05D007107 3.0e-58 230.7 657 60.1
Atru.chr11.1955 Acer truncatum HOM05D006250 ORTHO05D007107 3.3e-57 227.3 599 64.1
CARHR010650 Cardamine hirsuta HOM05D006250 ORTHO05D007107 3.3e-57 227.3 618 74.4
TAR371G0500 Trochodendron aralioides HOM05D006250 ORTHO05D007107 5.6e-57 226.5 629 61.7
CANSAT01G1928 Cannabis sativa HOM05D006250 ORTHO05D007107 7.3e-57 226.1 619 74.0
VMungo1215G1343 Vigna mungo HOM05D006250 ORTHO05D007107 7.3e-57 226.1 574 77.9
Thhalv10007114m.g Eutrema salsugineum HOM05D006250 ORTHO05D007107 1.6e-56 224.9 621 74.2
BcaC07g38607 Brassica carinata HOM05D006250 ORTHO05D007107 2.8e-56 224.2 601 75.7
TAR629G0559 Trochodendron aralioides HOM05D006250 ORTHO05D007107 1.8e-55 221.5 255 54.5
Carub.0001s0994 Capsella rubella HOM05D006250 ORTHO05D007107 6.8e-55 219.5 623 74.0
VMungo0720G1586 Vigna mungo HOM05D006250 ORTHO05D007107 6.8e-55 219.5 619 73.0
SGA_v2.0_scaffold8G04258 Striga asiatica HOM05D006250 ORTHO05D007107 1.2e-54 218.8 666 69.7
Sp1g09140 Schrenkiella parvula HOM05D006250 ORTHO05D007107 1.5e-54 218.4 621 74.1
AUR62026573 Chenopodium quinoa HOM05D006250 ORTHO05D007107 4.4e-54 216.9 583 74.3
Phvul.002G075400 Phaseolus vulgaris HOM05D006250 ORTHO05D007107 4.4e-54 216.9 652 67.3
AUR62039411 Chenopodium quinoa HOM05D006250 ORTHO05D007107 2.2e-53 214.5 583 74.3
ClCG09G022110 Citrullus lanatus HOM05D006250 ORTHO05D007107 2.9e-53 214.2 263 53.6
THA.LOC104816735 Tarenaya hassleriana HOM05D006250 ORTHO05D007107 3.7e-53 213.8 617 74.1
CDE04G2141 Ceratophyllum demersum HOM05D006250 ORTHO05D007107 6.4e-53 213.0 573 75.6
MBI18_g16987_MAGBIO Magnolia biondii HOM05D006250 ORTHO05D007107 6.4e-53 213.0 561 76.5
Nn3g16985 Nelumbo nucifera HOM05D006250 ORTHO05D007107 6.4e-53 213.0 624 63.5
EL10Ac6g13760 Beta vulgaris HOM05D006250 ORTHO05D007107 8.3e-53 212.6 563 76.7
A06p07280 Brassica napus HOM05D006250 ORTHO05D007107 7.1e-52 209.5 619 73.8
BraA06t23934Z Brassica rapa HOM05D006250 ORTHO05D007107 7.1e-52 209.5 619 73.8
HanXRQChr10g0288221 Helianthus annuus HOM05D006250 ORTHO05D007107 7.1e-52 209.5 204 60.8
C08p13750 Brassica napus HOM05D006250 ORTHO05D007107 9.2e-52 209.1 245 53.5
Lj6A800T42 Lonicera japonica HOM05D006250 ORTHO05D007107 9.2e-52 209.1 630 70.2
A08p33910 Brassica napus HOM05D006250 ORTHO05D007107 4.6e-51 206.8 627 72.6
BcaC05g24872 Brassica carinata HOM05D006250 ORTHO05D007107 1.3e-50 205.3 560 78.9
C05p08800 Brassica napus HOM05D006250 ORTHO05D007107 3.0e-50 204.1 560 78.8
BolC5t29626H Brassica oleracea HOM05D006250 ORTHO05D007107 3.0e-50 204.1 560 78.8
Medtr5g035590 Medicago truncatula HOM05D006250 ORTHO05D007107 6.6e-50 203.0 622 73.2
Ah.03g132320 Amaranthus hybridus HOM05D006250 ORTHO05D007107 3.3e-49 200.7 630 59.8
PSO063G2741 Papaver somniferum HOM05D006250 ORTHO05D007107 5.6e-49 199.9 633 68.6
PSO832G4030 Papaver somniferum HOM05D006250 ORTHO05D007107 9.5e-49 199.1 633 68.4
unitig_749.g13267 Utricularia gibba HOM05D006250 ORTHO05D007107 9.5e-49 199.1 551 66.6
AT1G10510 Arabidopsis thaliana HOM05D006250 ORTHO05D007107 2.1e-48 198.0 253 51.8
AL1G21310 Arabidopsis lyrata HOM05D006250 ORTHO05D007107 4.7e-48 196.8 249 51.4
BcaC05g24932 Brassica carinata HOM05D006250 ORTHO05D007107 6.2e-48 196.4 202 55.4
Ca_18091_v3 Cicer arietinum L. HOM05D006250 ORTHO05D007107 1.1e-47 195.7 624 72.6
Nitab4.5_0005722g0060 Nicotiana tabacum HOM05D006250 ORTHO05D007107 4.0e-47 193.7 249 50.2
Actinidia15003 Actinidia chinensis HOM05D006250 ORTHO05D007107 6.8e-47 193.0 598 71.6
Psat4g140960 Pisum sativum HOM05D006250 ORTHO05D007107 3.4e-46 190.7 252 49.2
PGR102G1255 Punica granatum HOM05D006250 ORTHO05D007107 3.4e-46 190.7 491 84.9
MELO3C002989.2 Cucumis melo HOM05D006250 ORTHO05D007107 5.8e-46 189.9 228 54.4
Dinv24907 Davidia involucrata HOM05D006250 ORTHO05D007107 9.9e-46 189.1 471 87.5
CsaV3_5G025030 Cucumis sativus L. HOM05D006250 ORTHO05D007107 4.9e-45 186.8 228 53.5
ECA246G3811 Erigeron canadensis HOM05D006250 ORTHO05D007107 8.4e-45 186.0 188 55.9
ATR0829G105 Amborella trichopoda HOM05D006250 ORTHO05D007107 1.3e-42 178.7 504 78.8
DCAR_026556 Daucus carota HOM05D006250 ORTHO05D007107 2.5e-41 174.5 170 57.1
Sed0020226 Sechium edule HOM05D006250 ORTHO05D007107 2.8e-40 171.0 226 50.4
Lsat_1_v5_gn_4_95161 Lactuca sativa HOM05D006250 ORTHO05D007107 6.8e-39 166.4 143 64.3
Sc11g0001380 Simmondsia chinensis HOM05D006250 ORTHO05D007107 1.5e-38 165.2 225 48.4
Os06g0237502 Oryza sativa ssp. japonica HOM05D006250 ORTHO05D007107 2.6e-38 164.5 560 70.7
Hund05952 Selenicereus undatus HOM05D006250 ORTHO05D007107 3.4e-38 164.1 622 69.1
Peaxi162Scf00421g00828 Petunia axillaris HOM05D006250 ORTHO05D007107 2.1e-35 154.8 553 72.2
HPP92_017346 Vanilla planifolia HOM05D006250 ORTHO05D007107 4.6e-35 153.7 590 70.5
vmacro16283 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 7.3e-33 146.4 126 62.7
Rhsim12G0124700 Rhododendron simsii HOM05D006250 ORTHO05D007107 3.4e-30 137.5 195 44.6
Hma1.2p1_1049F.1_g251790 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.7e-29 135.2 195 48.2
Hma1.2p1_2649F.1_g326133 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.7e-29 135.2 195 48.2
Zm00001eb371900 Zea mays HOM05D006250 ORTHO05D007107 2.4e-28 131.3 550 68.7
Nitab4.5_0000257g0160 Nicotiana tabacum HOM05D006250 ORTHO05D007107 5.6e-25 120.2 255 38.8
Hma1.2p1_2649F.1_g326137 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 2.6e-22 111.3 91 86.8
TAR629G0016 Trochodendron aralioides HOM05D006250 ORTHO05D007107 3.9e-18 97.4 57 84.2
Lsat_1_v5_gn_4_84060 Lactuca sativa HOM05D006250 ORTHO05D007107 2.1e-16 91.7 64 68.8
SEGI_23986 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 3.7e-16 90.9 564 67.2
vmacro16284 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 2.6e-14 84.7 191 37.2
AagrBONN_evm.TU.Sc2ySwM_344.3920 Anthoceros agrestis HOM05D006250 ORTHO05D007107 1.2e-11 75.9 169 37.9
SEGI_34898 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 1.6e-11 75.5 84 73.8
DCAR_026558 Daucus carota HOM05D006250 ORTHO05D007107 7.9e-11 73.2 100 45.0
Pp3c14_24560 Physcomitrium patens HOM05D006250 ORTHO05D007107 5.1e-10 70.5 81 75.3
Pp3c14_24566 Physcomitrium patens HOM05D006250 ORTHO05D007107 5.1e-10 70.5 81 75.3
SMO116G0024 Selaginella moellendorffii HOM05D006250 ORTHO05D007107 2.5e-09 68.2 62 51.6
Mapoly0090s0039 Marchantia polymorpha HOM05D006250 ORTHO05D007107 7.4e-09 66.6 59 54.2
SGA_v2.0_scaffold68G22967 Striga asiatica HOM05D006250 ORTHO05D007107 2.0e-06 58.5 123 39.0
RcHm_v2.0_Chr6g0258861 Rosa chinensis HOM05D046827 ORTHO05D007107 2.6e-06 58.2 39 82.1
CBR_g61650 Chara braunii HOM05D006250 ORTHO05D007107 3.4e-06 57.8 87 60.9
RcHm_v2.0_Chr5g0079721 Rosa chinensis HOM05D046827 ORTHO05D007107 7.6e-06 56.6 39 79.5


User provided reference genes

Program Settings