Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G0862 Fragaria x ananassa HOM05D003570 ORTHO05D004207 0.0e+00 1195.6 637 100.0
FAN07G1326 Fragaria x ananassa HOM05D003570 ORTHO05D004207 2.8e-301 1038.1 650 86.9
FAN12G2286 Fragaria x ananassa HOM05D003570 ORTHO05D004207 4.3e-294 1014.2 634 87.5
FAN22G0389 Fragaria x ananassa HOM05D003570 ORTHO05D004207 9.0e-292 1006.5 634 87.2
FvH4_4g25360 Fragaria vesca HOM05D003570 ORTHO05D004207 4.5e-291 1004.2 635 86.9
RcHm_v2.0_Chr4g0432651 Rosa chinensis HOM05D003570 ORTHO05D004207 2.7e-272 941.8 634 81.1
Prupe.1G241900 Prunus persica HOM05D003570 ORTHO05D004207 1.7e-197 693.3 640 60.9
MD13G1104500 Malus domestica HOM05D003570 ORTHO05D004207 1.0e-162 577.8 569 61.2
Duzib248G0757 Durio zibethinus HOM05D003570 ORTHO05D004207 4.7e-155 552.4 643 50.4
Thecc.02G265200 Theobroma cacao HOM05D003570 ORTHO05D004207 4.7e-155 552.4 637 50.9
CANSAT11G1164 Cannabis sativa HOM05D003570 ORTHO05D004207 6.1e-155 552.0 652 49.2
Haze_12279 Corylus avellana HOM05D003570 ORTHO05D004207 8.8e-154 548.1 656 49.1
Eucgr.B03244 Eucalyptus grandis HOM05D003570 ORTHO05D004207 1.5e-150 537.3 634 50.0
COL.COLO4_23499 Corchorus olitorius HOM05D003570 ORTHO05D004207 1.7e-149 533.9 636 49.8
Gohir.D04G180400 Gossypium hirsutum HOM05D003570 ORTHO05D004207 3.8e-149 532.7 639 48.4
CiPaw.06G064800 Carya illinoinensis HOM05D003570 ORTHO05D004207 5.0e-149 532.3 632 49.8
Gorai.012G173500 Gossypium raimondii HOM05D003570 ORTHO05D004207 5.0e-149 532.3 632 48.7
Gohir.A04G137200 Gossypium hirsutum HOM05D003570 ORTHO05D004207 2.5e-148 530.0 642 48.4
Ciclev10030923m.g Citrus clementina HOM05D003570 ORTHO05D004207 5.5e-148 528.9 634 49.1
Manes.13G020900 Manihot esculenta HOM05D003570 ORTHO05D004207 9.4e-148 528.1 646 49.2
Potri.008G183500 Populus trichocarpa HOM05D003570 ORTHO05D004207 2.3e-146 523.5 635 49.3
Cpa.g.sc13.88 Carica papaya HOM05D003570 ORTHO05D004207 1.0e-141 508.1 666 47.0
TWI36G1196 Tripterygium wilfordii HOM05D003570 ORTHO05D004207 5.0e-141 505.8 653 47.5
THA.LOC104805269 Tarenaya hassleriana HOM05D003570 ORTHO05D004207 1.2e-139 501.1 638 46.4
Nn4g22548 Nelumbo nucifera HOM05D003570 ORTHO05D004207 2.3e-138 496.9 654 47.2
TAR622G0746 Trochodendron aralioides HOM05D003570 ORTHO05D004207 8.8e-138 495.0 643 47.6
GSVIVG01000572001 Vitis vinifera HOM05D003570 ORTHO05D004207 3.7e-136 489.6 658 46.0
QL03p056574 Quercus lobata HOM05D003570 ORTHO05D004207 4.8e-136 489.2 618 48.5
arahy.Tifrunner.gnm1.ann1.8897EQ Arachis hypogaea HOM05D003570 ORTHO05D004207 1.8e-135 487.3 644 47.2
Phvul.001G256000 Phaseolus vulgaris HOM05D003570 ORTHO05D004207 1.6e-134 484.2 643 47.6
PGR102G1250 Punica granatum HOM05D003570 ORTHO05D004207 3.5e-134 483.0 634 45.7
arahy.Tifrunner.gnm1.ann1.I1BHDP Arachis hypogaea HOM05D003570 ORTHO05D004207 5.9e-134 482.3 645 46.8
Atru.chr11.2174 Acer truncatum HOM05D003570 ORTHO05D004207 5.0e-133 479.2 640 47.2
VMungo1383G2895 Vigna mungo HOM05D003570 ORTHO05D004207 6.5e-133 478.8 641 46.5
Glyma.11G244100 Glycine max HOM05D003570 ORTHO05D004207 4.7e-131 472.6 641 45.4
Actinidia37450 Actinidia chinensis HOM05D003570 ORTHO05D004207 2.6e-129 466.8 650 43.4
Psat5g092360 Pisum sativum HOM05D003570 ORTHO05D004207 2.8e-128 463.4 655 44.3
Lj4g0018208 Lotus japonicus HOM05D003570 ORTHO05D004207 4.9e-128 462.6 635 45.0
CsaV3_5G030790 Cucumis sativus L. HOM05D003570 ORTHO05D004207 2.7e-126 456.8 623 45.7
Nitab4.5_0002373g0110 Nicotiana tabacum HOM05D003570 ORTHO05D004207 7.7e-126 455.3 643 42.9
ClCG05G026050 Citrullus lanatus HOM05D003570 ORTHO05D004207 1.3e-125 454.5 623 45.4
Lj6g0027950 Lotus japonicus HOM05D003570 ORTHO05D004207 6.6e-125 452.2 649 44.4
MBI04_g13681_MAGBIO Magnolia biondii HOM05D003570 ORTHO05D004207 6.1e-123 445.7 632 45.7
TPR.G35967 Trifolium pratense HOM05D003570 ORTHO05D004207 1.0e-122 444.9 617 44.2
MELO3C011924.2 Cucumis melo HOM05D003570 ORTHO05D004207 6.8e-122 442.2 658 43.8
Ca_25131_v3 Cicer arietinum L. HOM05D001269 ORTHO05D001083 4.4e-121 439.5 633 43.3
Lalb_Chr08g0230861 Lupinus albus HOM05D003570 ORTHO05D004207 4.4e-121 439.5 545 48.6
Peaxi162Scf00128g00550 Petunia axillaris HOM05D003570 ORTHO05D004207 4.4e-121 439.5 636 42.8
Sc04g0009680 Simmondsia chinensis HOM05D003570 ORTHO05D004207 5.7e-121 439.1 649 42.7
CAN.G1572.8 Capsicum annuum HOM05D003570 ORTHO05D004207 3.2e-119 433.3 632 43.8
Sopen05g008710 Solanum pennellii HOM05D003570 ORTHO05D004207 1.6e-118 431.0 637 42.1
Medtr3g086460 Medicago truncatula HOM05D003570 ORTHO05D004207 7.8e-118 428.7 613 44.5
COL.COLO4_27904 Corchorus olitorius HOM05D003570 ORTHO05D004207 2.9e-117 426.8 678 40.7
Sed0006332 Sechium edule HOM05D003570 ORTHO05D004207 7.3e-116 422.2 585 45.1
FAN08G0154 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.2e-115 421.4 483 56.3
AUR62024231 Chenopodium quinoa HOM05D003570 ORTHO05D004207 8.3e-112 408.7 643 42.1
HanXRQChr08g0208421 Helianthus annuus HOM05D003570 ORTHO05D004207 2.7e-110 403.7 629 41.0
Nitab4.5_0004117g0010 Nicotiana tabacum HOM05D003570 ORTHO05D004207 2.7e-110 403.7 637 40.0
QL03p056953 Quercus lobata HOM05D003570 ORTHO05D004207 7.8e-110 402.1 628 42.2
Lsat_1_v5_gn_0_32260 Lactuca sativa HOM05D003570 ORTHO05D004207 1.3e-109 401.4 634 40.5
AT1G13120 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 2.3e-106 390.6 633 42.2
AL1G24790 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 3.1e-106 390.2 630 42.1
MSTRG.553 Avicennia marina HOM05D003570 ORTHO05D004207 7.5e-105 385.6 637 39.7
BolC8t52217H Brassica oleracea HOM05D003570 ORTHO05D004207 7.5e-105 385.6 640 40.5
Aqoxy7G03799 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 6.4e-104 382.5 645 42.0
PSO339G2835 Papaver somniferum HOM05D003570 ORTHO05D004207 1.1e-103 381.7 654 40.7
Nitab4.5_0001978g0070 Nicotiana tabacum HOM05D003570 ORTHO05D004207 3.2e-103 380.2 689 38.8
DCAR_026498 Daucus carota HOM05D003570 ORTHO05D004207 1.2e-102 378.3 648 40.4
BraA09t41684Z Brassica rapa HOM05D003570 ORTHO05D004207 2.1e-102 377.5 640 40.0
PSO063G4933 Papaver somniferum HOM05D003570 ORTHO05D004207 3.5e-102 376.7 655 40.2
Oeu038645.2 Olea europaea HOM05D003570 ORTHO05D004207 1.1e-100 371.7 679 38.3
CARHR013490 Cardamine hirsuta HOM05D003570 ORTHO05D004207 3.3e-100 370.2 634 39.3
BcaC07g41664 Brassica carinata HOM05D003570 ORTHO05D004207 7.3e-100 369.0 630 40.3
Thhalv10007079m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 4.7e-99 366.3 632 41.1
Migut.K00625 Erythranthe guttata HOM05D003570 ORTHO05D004207 1.1e-98 365.2 640 39.1
C08p46780 Brassica napus HOM05D003570 ORTHO05D004207 1.2e-97 361.7 631 39.6
Cc11_g16040 Coffea canephora HOM05D003570 ORTHO05D004207 7.6e-97 359.0 639 38.2
SGA_v2.0_scaffold22G09799 Striga asiatica HOM05D003570 ORTHO05D004207 1.7e-96 357.8 636 38.4
A09p63350 Brassica napus HOM05D003570 ORTHO05D004207 2.9e-96 357.1 635 39.5
CiPaw.02G032100 Carya illinoinensis HOM05D003570 ORTHO05D004207 1.4e-95 354.8 624 40.1
Carub.0001s1286 Capsella rubella HOM05D003570 ORTHO05D004207 9.2e-95 352.1 648 37.8
AUR62005511 Chenopodium quinoa HOM05D003570 ORTHO05D004207 1.2e-94 351.7 637 39.2
Lj6A815G40 Lonicera japonica HOM05D003570 ORTHO05D004207 6.6e-93 345.9 472 45.1
Aa31LG1G1680 Aethionema arabicum HOM05D003570 ORTHO05D004207 8.6e-93 345.5 635 39.1
Sp1g11650 Schrenkiella parvula HOM05D003570 ORTHO05D004207 1.1e-92 345.1 634 36.4
ATR0824G009 Amborella trichopoda HOM05D003570 ORTHO05D004207 8.1e-91 339.0 634 37.7
SEGI_05718 Sequoiadendron giganteum HOM05D003570 ORTHO05D004207 5.8e-89 332.8 640 37.5
ECA233G5166 Erigeron canadensis HOM05D002671 ORTHO05D002985 1.7e-88 331.3 547 39.5
SHI04269 Sapria himalayana HOM05D003570 ORTHO05D004207 2.2e-88 330.9 550 39.6
Sabra08G0139700 Salix brachista HOM05D003570 ORTHO05D004207 1.0e-85 322.0 321 53.9
Os02g0596100 Oryza sativa ssp. japonica HOM05D003570 ORTHO05D004207 1.6e-83 314.7 638 36.5
EL10As2g23162 Beta vulgaris HOM05D003570 ORTHO05D004207 2.4e-79 300.8 484 40.7
PSO063G3251 Papaver somniferum HOM05D003570 ORTHO05D004207 5.4e-79 299.7 656 35.1
Lj3A151T25 Lonicera japonica HOM05D003570 ORTHO05D004207 2.7e-78 297.4 354 46.0
PSO063G1535 Papaver somniferum HOM05D003570 ORTHO05D004207 1.3e-75 288.5 310 50.6
FAN13G1935 Fragaria x ananassa HOM05D003570 ORTHO05D004207 2.1e-75 287.7 399 52.9
Zm00001eb062020 Zea mays HOM05D003570 ORTHO05D004207 2.4e-74 284.3 565 36.5
vmacro17618 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 5.3e-74 283.1 551 38.3
Dinv11043 Davidia involucrata HOM05D003570 ORTHO05D004207 3.4e-73 280.4 466 40.3
PSO754G0035 Papaver somniferum HOM05D003570 ORTHO05D004207 4.5e-73 280.0 301 49.8
Zm00001eb212370 Zea mays HOM05D003570 ORTHO05D004207 6.4e-72 276.2 541 36.4
Pp3c9_21420 Physcomitrium patens HOM05D003570 ORTHO05D004207 3.2e-71 273.9 653 33.1
Hma1.2p1_1533F.1_g289360 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 1.8e-69 268.1 263 52.1
AL6G47680 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 1.6e-67 261.5 601 33.8
PGSC0003DMG400016968 Solanum tuberosum HOM05D003570 ORTHO05D004207 4.8e-67 260.0 260 50.4
Oeu038646.1 Olea europaea HOM05D003570 ORTHO05D004207 1.5e-65 255.0 458 38.9
Rhsim12G0108000 Rhododendron simsii HOM05D003570 ORTHO05D004207 2.0e-65 254.6 272 48.9
Aqoxy1G03220 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 7.1e-63 246.1 303 46.5
Dinv15203 Davidia involucrata HOM05D003570 ORTHO05D004207 7.9e-62 242.7 216 57.9
Mapoly0004s0250 Marchantia polymorpha HOM05D003570 ORTHO05D004207 2.3e-61 241.1 616 31.0
Aqoxy5G03688 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 3.9e-61 240.4 232 52.6
vmacro16171 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 8.7e-61 239.2 236 53.0
SMO367G0645 Selaginella moellendorffii HOM05D003570 ORTHO05D004207 4.1e-58 230.3 633 29.4
Thhalv10001133m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 3.4e-57 227.3 599 32.4
CBR_g38118 Chara braunii HOM05D003570 ORTHO05D004207 9.3e-55 219.2 714 28.7
vmacro16173 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 1.6e-51 208.4 242 47.5
Haze_11814 Corylus avellana HOM05D001314 ORTHO05D001165 5.9e-49 199.9 213 53.1
Rhsim12G0107900 Rhododendron simsii HOM05D003570 ORTHO05D004207 7.9e-46 189.5 243 45.3
CDE06G1553 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 1.1e-44 185.7 178 52.8
Haze_20779 Corylus avellana HOM05D003570 ORTHO05D004207 5.7e-44 183.3 285 41.4
FAN08G3485 Fragaria x ananassa HOM05D003570 ORTHO05D004207 2.2e-43 181.4 121 76.9
CSS0045431 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 2.6e-41 174.5 146 58.9
Nitab4.5_0000229g0040 Nicotiana tabacum HOM05D003570 ORTHO05D004207 7.7e-41 172.9 242 43.0
vmacro16170 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 3.8e-40 170.6 411 34.5
Nitab4.5_0000229g0020 Nicotiana tabacum HOM05D003570 ORTHO05D004207 1.4e-39 168.7 324 37.7
unitig_22.g6426 Utricularia gibba HOM05D003570 ORTHO05D004207 2.3e-37 161.4 173 47.4
Cre06.g300900 Chlamydomonas reinhardtii HOM05D003570 ORTHO05D004207 3.7e-35 154.1 300 34.7
MCO05G059 Micromonas commoda HOM05D003570 ORTHO05D004207 4.1e-34 150.6 314 31.8
AagrBONN_evm.TU.Sc2ySwM_362.2178 Anthoceros agrestis HOM05D003570 ORTHO05D004207 2.6e-33 147.9 171 40.9
FAN18G0384 Fragaria x ananassa HOM05D003570 ORTHO05D004207 5.9e-33 146.7 173 56.1
CSS0031984 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 1.7e-32 145.2 238 39.1
FvH4_5g15741 Fragaria vesca HOM05D003570 ORTHO05D004207 6.5e-32 143.3 171 55.6
Hma1.2p1_1533F.1_g289350 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 2.3e-29 134.8 149 45.0
vmacro16172 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 4.0e-29 134.0 290 33.8
Sopen04g013730 Solanum pennellii HOM05D003570 ORTHO05D004207 1.5e-28 132.1 115 56.5
EL10Ac8g19584 Beta vulgaris HOM05D003570 ORTHO05D004207 2.8e-27 127.9 123 52.8
Medtr7g034350 Medicago truncatula HOM05D003570 ORTHO05D004207 2.8e-27 127.9 183 39.3
Aqoxy5G03687 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 9.1e-26 122.9 240 37.9
AT4G05523 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 1.6e-25 122.1 210 36.7
TAR374G0522 Trochodendron aralioides HOM05D003570 ORTHO05D004207 5.9e-25 120.2 96 61.5
BolC4t26878H Brassica oleracea HOM05D003570 ORTHO05D004207 2.9e-24 117.9 205 39.0
PRCOL_00001147 Prasinoderma coloniale HOM05D003570 ORTHO05D004207 1.9e-23 115.2 336 27.1
AL2G22720 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 9.4e-23 112.8 144 45.8
A07p18160 Brassica napus HOM05D003570 ORTHO05D004207 3.6e-22 110.9 199 35.2
BraA01t00580Z Brassica rapa HOM05D003570 ORTHO05D004207 3.6e-22 110.9 199 35.2
FvH4_5g15750 Fragaria vesca HOM05D003570 ORTHO05D004207 6.1e-22 110.2 70 78.6
Lj3A151T24 Lonicera japonica HOM05D003570 ORTHO05D004207 8.0e-22 109.8 131 49.6
AagrBONN_evm.TU.Sc2ySwM_344.4464 Anthoceros agrestis HOM05D003570 ORTHO05D004207 3.0e-21 107.8 489 24.9
Hma1.2p1_0054F.1_g030990 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 3.0e-21 107.8 90 56.7
A07p19900 Brassica napus HOM05D003570 ORTHO05D004207 4.0e-21 107.5 205 34.6
C04p53310 Brassica napus HOM05D003570 ORTHO05D004207 5.2e-21 107.1 208 37.5
BolC5t29767H Brassica oleracea HOM05D003570 ORTHO05D004207 2.6e-20 104.8 279 30.5
BcaC06g34341 Brassica carinata HOM05D003570 ORTHO05D004207 3.4e-20 104.4 211 30.8
BcaC02g08536 Brassica carinata HOM05D003570 ORTHO05D004207 3.7e-19 100.9 172 36.6
BcaC05g25085 Brassica carinata HOM05D003570 ORTHO05D004207 8.3e-19 99.8 299 32.4
CDE06G0651 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 2.4e-18 98.2 265 30.9
BcaC05g25084 Brassica carinata HOM05D003570 ORTHO05D004207 4.1e-18 97.4 205 31.7
Glyma.18G013000 Glycine max HOM05D003570 ORTHO05D004207 2.7e-17 94.7 78 53.8
TAR374G0931 Trochodendron aralioides HOM05D003570 ORTHO05D004207 7.7e-17 93.2 145 44.8
EL10As2g23164 Beta vulgaris HOM05D003570 ORTHO05D004207 2.2e-16 91.7 157 38.2
Sp2g10400 Schrenkiella parvula HOM05D003570 ORTHO05D004207 3.8e-16 90.9 107 48.6
C04p53220 Brassica napus HOM05D003570 ORTHO05D004207 2.3e-13 81.6 154 35.7
Actinidia15112 Actinidia chinensis HOM05D003570 ORTHO05D004207 4.4e-12 77.4 76 48.7
AL2G22730 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 1.7e-11 75.5 114 37.7
MD05G1151500 Malus domestica HOM05D003570 ORTHO05D004207 2.8e-11 74.7 49 77.6
Actinidia15111 Actinidia chinensis HOM05D003570 ORTHO05D004207 2.4e-10 71.6 74 50.0
C05p10220 Brassica napus HOM05D003570 ORTHO05D004207 7.0e-10 70.1 107 36.4
EL10Ac1g01653 Beta vulgaris HOM05D003570 ORTHO05D004207 7.7e-09 66.6 49 65.3
C07p30170 Brassica napus HOM05D003570 ORTHO05D004207 1.0e-08 66.2 67 52.2
unitig_22.g6425 Utricularia gibba HOM05D003570 ORTHO05D004207 1.0e-08 66.2 219 29.7
CDE06G1606 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 5.0e-08 63.9 91 37.4
C03p39130 Brassica napus HOM05D003570 ORTHO05D004207 2.5e-07 61.6 113 38.1
CARHR253470 Cardamine hirsuta HOM05D003570 ORTHO05D004207 9.5e-07 59.7 152 36.2
C07p30160 Brassica napus HOM05D003570 ORTHO05D004207 2.8e-06 58.2 77 37.7
CAN.G149.33 Capsicum annuum HOM05D001546 ORTHO05D015824 6.1e-06 57.0 69 43.5
PSO063G3896 Papaver somniferum HOM05D003570 ORTHO05D004207 6.1e-06 57.0 244 27.0


User provided reference genes

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