Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.1e-192 676.4 341 100.0
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 1.3e-191 672.9 341 99.4
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.3e-191 672.9 341 99.4
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 3.1e-190 668.3 341 98.5
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 9.1e-190 666.8 342 98.8
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.7e-180 636.0 322 99.4
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 4.7e-178 627.9 341 92.7
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 2.8e-175 618.6 339 91.4
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 1.8e-174 615.9 339 90.6
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 2.4e-174 615.5 335 91.6
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 4.1e-174 614.8 341 90.3
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 9.1e-174 613.6 339 90.0
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 3.5e-173 611.7 341 89.7
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 7.7e-173 610.5 339 89.7
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 1.0e-172 610.1 340 89.7
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 3.8e-172 608.2 337 89.6
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 5.0e-172 607.8 339 89.1
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 5.0e-172 607.8 339 89.4
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 6.5e-172 607.4 340 89.7
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 6.5e-172 607.4 337 88.7
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 8.5e-172 607.1 336 89.6
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 1.1e-171 606.7 339 88.2
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 1.5e-171 606.3 339 88.8
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.5e-171 606.3 339 88.2
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.5e-171 606.3 340 90.0
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 1.9e-171 605.9 339 88.5
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 1.9e-171 605.9 340 90.3
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 1.9e-171 605.9 340 90.3
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 3.2e-171 605.1 334 90.4
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 4.2e-171 604.7 340 90.0
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 5.5e-171 604.4 339 89.1
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 5.5e-171 604.4 335 89.3
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 5.5e-171 604.4 339 88.5
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 1.2e-170 603.2 340 87.6
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 1.6e-170 602.8 340 89.4
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 2.1e-170 602.4 339 87.6
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 2.7e-170 602.1 339 88.2
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 2.7e-170 602.1 339 88.5
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 3.6e-170 601.7 339 88.2
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 3.6e-170 601.7 339 88.8
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 8.0e-170 600.5 340 87.9
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 1.4e-169 599.7 339 88.2
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 3.0e-169 598.6 339 87.3
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 4.0e-169 598.2 339 87.0
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 4.0e-169 598.2 337 88.7
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 4.0e-169 598.2 339 87.9
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 5.2e-169 597.8 335 89.9
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 5.2e-169 597.8 339 87.6
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 6.8e-169 597.4 339 87.3
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 6.8e-169 597.4 339 87.3
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 6.8e-169 597.4 339 87.3
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 1.2e-168 596.7 341 87.4
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.2e-168 596.7 340 86.8
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 1.5e-168 596.3 339 86.1
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 1.5e-168 596.3 339 87.3
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 2.0e-168 595.9 341 86.8
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 2.6e-168 595.5 336 87.8
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 3.4e-168 595.1 341 87.1
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 3.4e-168 595.1 339 85.8
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 4.4e-168 594.7 339 87.0
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 5.7e-168 594.3 339 85.8
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 7.5e-168 594.0 339 86.4
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 9.8e-168 593.6 341 88.0
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 9.8e-168 593.6 334 88.3
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 2.2e-167 592.4 337 87.5
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 2.8e-167 592.0 334 88.6
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 2.8e-167 592.0 340 87.6
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 3.7e-167 591.7 339 86.1
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 4.8e-167 591.3 339 86.1
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 6.3e-167 590.9 336 89.3
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 6.3e-167 590.9 341 86.8
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 6.3e-167 590.9 334 87.7
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 1.1e-166 590.1 341 86.2
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 1.1e-166 590.1 341 87.1
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 1.4e-166 589.7 341 86.5
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 2.4e-166 589.0 335 87.5
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 3.1e-166 588.6 334 87.7
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 9.1e-166 587.0 339 86.1
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 2.0e-165 585.9 327 89.6
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 6.5e-164 580.9 337 85.2
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 1.1e-163 580.1 356 82.6
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 3.2e-163 578.6 338 85.2
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 4.2e-163 578.2 338 84.9
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 4.2e-163 578.2 381 78.5
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 7.2e-163 577.4 338 84.9
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 9.4e-163 577.0 334 86.5
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 1.2e-162 576.6 329 88.1
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 2.7e-162 575.5 338 84.0
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 4.7e-162 574.7 337 84.0
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 6.1e-162 574.3 338 84.6
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 1.0e-161 573.5 338 84.6
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 1.0e-161 573.5 339 82.3
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 1.4e-161 573.2 338 84.3
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 1.4e-161 573.2 338 84.0
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 1.4e-161 573.2 337 84.3
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 1.8e-161 572.8 339 83.8
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 3.0e-161 572.0 337 84.0
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 3.0e-161 572.0 337 84.3
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 4.0e-161 571.6 338 83.7
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 5.2e-161 571.2 340 83.2
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 6.8e-161 570.9 342 82.7
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 6.8e-161 570.9 337 84.0
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 1.5e-160 569.7 338 83.7
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 1.5e-160 569.7 311 91.0
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 9.8e-160 567.0 339 82.9
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 2.2e-159 565.8 329 84.2
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 2.8e-159 565.5 338 83.4
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 2.8e-159 565.5 318 88.7
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 6.3e-159 564.3 339 84.7
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 8.3e-159 563.9 353 80.5
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 8.3e-159 563.9 311 89.4
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 5.9e-157 557.8 339 80.5
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 7.7e-157 557.4 320 86.6
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.0e-156 557.0 340 84.7
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 5.0e-156 554.7 320 85.0
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 4.3e-155 551.6 332 78.6
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 5.6e-155 551.2 337 79.8
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 6.1e-154 547.7 336 77.1
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 2.3e-153 545.8 336 79.2
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 1.3e-151 540.0 339 81.1
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 1.3e-151 540.0 337 77.2
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 1.1e-150 537.0 380 74.7
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 4.1e-150 535.0 334 76.9
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 1.2e-149 533.5 334 76.6
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 1.6e-149 533.1 318 83.0
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 1.6e-146 523.1 422 67.3
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 3.7e-143 511.9 365 73.2
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 6.2e-138 494.6 297 83.2
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 3.1e-137 492.3 339 76.1
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 8.9e-137 490.7 267 89.9
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 4.9e-135 485.0 316 73.4
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 9.2e-134 480.7 266 90.2
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.2e-133 480.3 266 91.0
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.2e-133 480.3 266 91.0
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 2.9e-127 459.1 339 70.8
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 3.2e-126 455.7 339 70.8
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 2.2e-119 433.0 344 66.3
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 1.1e-118 430.6 238 88.2
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 4.6e-117 425.2 251 80.5
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 4.4e-112 408.7 251 80.1
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 8.4e-111 404.4 313 62.3
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 3.9e-108 395.6 248 76.6
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 1.5e-107 393.7 216 88.9
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 4.5e-104 382.1 328 55.8
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 7.6e-104 381.3 329 58.7
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 1.1e-49 201.4 130 76.9
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 1.7e-42 177.6 168 57.1
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 3.5e-32 143.3 180 50.0
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 6.6e-31 139.0 79 86.1
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 4.4e-27 126.3 72 84.7
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 3.7e-26 123.2 76 80.3
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 5.4e-25 119.4 75 80.0
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 6.8e-20 102.4 112 55.4
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 3.9e-15 86.7 52 82.7
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 5.8e-11 72.8 39 84.6
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 1.3e-10 71.6 98 44.9
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 1.4e-09 68.2 100 43.0
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 2.1e-08 64.3 55 60.0
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 4.6e-08 63.2 60 56.7
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 4.6e-08 63.2 60 56.7
MELO3C032112.2 Cucumis melo HOM05D000002 ORTHO05D000001 4.3e-06 56.6 124 35.5


User provided reference genes

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