Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G0734 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.6e-172 609.4 309 100.0
FAN12G2601 Fragaria x ananassa HOM05D004876 ORTHO05D005488 2.8e-73 279.6 244 66.4
FvH4_7g26120 Fragaria vesca HOM05D004876 ORTHO05D005488 2.2e-70 270.0 244 64.8
FvH4_4g04970 Fragaria vesca HOM05D004876 ORTHO05D005488 8.5e-70 268.1 263 61.6
FAN06G0183 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.2e-68 264.2 240 65.0
FAN10G2920 Fragaria x ananassa HOM05D004876 ORTHO05D005488 3.6e-68 262.7 241 63.5
FAN03G2458 Fragaria x ananassa HOM05D004876 ORTHO05D005488 8.8e-67 258.1 241 63.1
RcHm_v2.0_Chr1g0372561 Rosa chinensis HOM05D004876 ORTHO05D005488 1.8e-59 233.8 244 57.8
Prupe.2G265600 Prunus persica HOM05D004876 ORTHO05D005488 1.9e-53 213.8 244 53.3
MD01G1169400 Malus domestica HOM05D004876 ORTHO05D005488 5.5e-53 212.2 239 53.6
CiPaw.02G093900 Carya illinoinensis HOM05D004876 ORTHO05D005488 3.6e-44 183.0 239 47.7
QL08p065087 Quercus lobata HOM05D004876 ORTHO05D005488 4.7e-44 182.6 247 49.0
Cpa.g.sc128.23 Carica papaya HOM05D004876 ORTHO05D005488 8.0e-44 181.8 240 47.9
Potri.019G061200 Populus trichocarpa HOM05D004876 ORTHO05D005488 4.0e-43 179.5 246 46.7
Lj1g0004349 Lotus japonicus HOM05D004876 ORTHO05D005488 5.2e-43 179.1 239 48.5
CiPaw.04G175400 Carya illinoinensis HOM05D004876 ORTHO05D005488 5.7e-42 175.6 239 46.0
Duzib114G0677 Durio zibethinus HOM05D004876 ORTHO05D005488 7.5e-42 175.3 240 45.4
Atru.chr12.194 Acer truncatum HOM05D004876 ORTHO05D005488 1.7e-41 174.1 254 46.1
THA.LOC104824370 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 1.7e-41 174.1 237 46.8
ClCG07G004830 Citrullus lanatus HOM05D004876 ORTHO05D005488 2.2e-41 173.7 240 46.2
CANSAT64G2122 Cannabis sativa HOM05D004876 ORTHO05D005488 4.9e-41 172.6 242 45.5
TAR636G2293 Trochodendron aralioides HOM05D004876 ORTHO05D005488 1.1e-40 171.4 242 46.7
CANSAT64G1352 Cannabis sativa HOM05D004876 ORTHO05D005488 1.8e-40 170.6 242 45.0
Glyma.06G141500 Glycine max HOM05D004876 ORTHO05D005488 1.8e-40 170.6 244 45.5
CsaV3_5G010740 Cucumis sativus L. HOM05D004876 ORTHO05D005488 3.2e-40 169.9 240 45.0
TWI09G0651 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 5.4e-40 169.1 250 46.4
MBI15_g39395_MAGBIO Magnolia biondii HOM05D004876 ORTHO05D005488 7.0e-40 168.7 237 46.8
VMungo1309G0380 Vigna mungo HOM05D004876 ORTHO05D005488 2.0e-39 167.2 240 44.6
Phvul.009G042700 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 3.0e-38 163.3 240 43.3
Sed0020097 Sechium edule HOM05D004876 ORTHO05D005488 5.0e-38 162.5 240 44.2
MELO3C020110.2 Cucumis melo HOM05D004876 ORTHO05D005488 6.6e-38 162.2 240 44.2
PSO675G4155 Papaver somniferum HOM05D004876 ORTHO05D005488 6.6e-38 162.2 239 43.5
Ca_29868_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 8.6e-38 161.8 106 77.4
PGR142G2846 Punica granatum HOM05D004876 ORTHO05D005488 8.6e-38 161.8 244 43.9
Phvul.005G185900 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 1.5e-37 161.0 241 44.4
Lalb_Chr11g0067701 Lupinus albus HOM05D004876 ORTHO05D005488 3.3e-37 159.8 243 44.0
TWI53G0120 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 5.6e-37 159.1 246 43.5
Migut.F01232 Erythranthe guttata HOM05D004876 ORTHO05D005488 7.3e-37 158.7 240 43.8
Sabra19G0074800 Salix brachista HOM05D004876 ORTHO05D005488 9.5e-37 158.3 112 74.1
Manes.10G044800 Manihot esculenta HOM05D004876 ORTHO05D005488 1.0e-35 154.8 242 44.6
Os03g0114200 Oryza sativa ssp. japonica HOM05D004876 ORTHO05D005488 1.0e-35 154.8 240 44.2
TPR.G13975 Trifolium pratense HOM05D004876 ORTHO05D005488 2.3e-35 153.7 240 43.3
PSO170G6098 Papaver somniferum HOM05D004876 ORTHO05D005488 3.1e-35 153.3 245 42.4
AUR62008150 Chenopodium quinoa HOM05D004876 ORTHO05D005488 5.2e-35 152.5 243 43.2
AUR62028732 Chenopodium quinoa HOM05D004876 ORTHO05D005488 5.2e-35 152.5 243 43.2
Psat5g069360 Pisum sativum HOM05D004876 ORTHO05D005488 5.2e-35 152.5 239 42.7
EL10Ac5g10661 Beta vulgaris HOM05D004876 ORTHO05D005488 2.0e-34 150.6 243 42.8
TPR.G28952 Trifolium pratense HOM05D004876 ORTHO05D005488 2.0e-34 150.6 241 43.2
vmacro06902 Vaccinium macrocarpon HOM05D004876 ORTHO05D005488 3.4e-34 149.8 247 40.9
Thecc.10G185000 Theobroma cacao HOM05D004876 ORTHO05D005488 5.8e-34 149.1 240 43.3
ATR1127G178 Amborella trichopoda HOM05D004876 ORTHO05D005488 7.5e-34 148.7 237 41.4
CiPaw.04G175300 Carya illinoinensis HOM05D004876 ORTHO05D005488 1.7e-33 147.5 104 71.2
Carub.0004s2308 Capsella rubella HOM05D004876 ORTHO05D005488 8.3e-33 145.2 242 42.1
HPP92_015433 Vanilla planifolia HOM05D004876 ORTHO05D005488 1.1e-32 144.8 233 42.5
ATR0733G227 Amborella trichopoda HOM05D004876 ORTHO05D005488 1.4e-32 144.4 240 40.8
AL4G38670 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 1.4e-32 144.4 241 41.9
Haze_17370 Corylus avellana HOM05D004876 ORTHO05D005488 1.9e-32 144.1 239 41.0
AT2G40780 Arabidopsis thaliana HOM05D004876 ORTHO05D005488 2.4e-32 143.7 244 40.2
AL4G34450 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 4.1e-32 142.9 242 41.7
BcaB06g29175 Brassica carinata HOM05D004876 ORTHO05D005488 4.1e-32 142.9 240 40.0
Dinv37250 Davidia involucrata HOM05D004876 ORTHO05D005488 4.1e-32 142.9 240 40.4
Sp4g23100 Schrenkiella parvula HOM05D004876 ORTHO05D005488 4.1e-32 142.9 240 40.0
BolC4t28355H Brassica oleracea HOM05D004876 ORTHO05D005488 4.6e-31 139.4 242 40.9
A04p31160 Brassica napus HOM05D004876 ORTHO05D005488 6.0e-31 139.0 242 40.5
C04p68560 Brassica napus HOM05D004876 ORTHO05D005488 6.0e-31 139.0 242 40.5
BraA04t18571Z Brassica rapa HOM05D004876 ORTHO05D005488 1.3e-30 137.9 242 39.7
Nitab4.5_0006356g0050 Nicotiana tabacum HOM05D004876 ORTHO05D005488 1.7e-30 137.5 240 39.6
THA.LOC104803220 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 2.3e-30 137.1 240 39.6
COL.COLO4_19475 Corchorus olitorius HOM05D004876 ORTHO05D005488 6.6e-30 135.6 247 38.9
Ciclev10032334m.g Citrus clementina HOM05D004876 ORTHO05D005488 8.6e-30 135.2 225 40.9
Dinv21858 Davidia involucrata HOM05D004876 ORTHO05D005488 8.6e-30 135.2 109 65.1
CDE07G1038 Ceratophyllum demersum HOM05D004876 ORTHO05D005488 1.1e-29 134.8 240 40.8
Aqoxy6G02070 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 1.5e-29 134.4 241 38.2
Thhalv10017311m.g Eutrema salsugineum HOM05D004876 ORTHO05D005488 1.5e-29 134.4 138 53.6
Nitab4.5_0000171g0270 Nicotiana tabacum HOM05D004876 ORTHO05D005488 1.9e-29 134.0 240 38.8
CARHR135880 Cardamine hirsuta HOM05D004876 ORTHO05D005488 2.5e-29 133.7 242 39.7
Duzib106G1237 Durio zibethinus HOM05D004876 ORTHO05D005488 5.6e-29 132.5 233 40.3
CSS0007534 Camellia sinensis var. sinensis HOM05D004876 ORTHO05D005488 1.2e-28 131.3 240 38.3
Zm00001eb000910 Zea mays HOM05D004876 ORTHO05D005488 1.2e-28 131.3 238 39.1
Aqoxy2G01672 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 4.7e-28 129.4 235 37.4
Migut.A00831 Erythranthe guttata HOM05D004876 ORTHO05D005488 4.7e-28 129.4 233 39.5
Peaxi162Scf00073g02225 Petunia axillaris HOM05D004876 ORTHO05D005488 1.1e-27 128.3 240 37.1
HanXRQChr14g0460541 Helianthus annuus HOM05D004876 ORTHO05D005488 1.8e-27 127.5 241 39.0
PGR142G0395 Punica granatum HOM05D004876 ORTHO05D005488 2.3e-27 127.1 226 36.7
Gohir.D10G184200 Gossypium hirsutum HOM05D004876 ORTHO05D005488 4.0e-27 126.3 245 37.6
Gorai.011G206400 Gossypium raimondii HOM05D004876 ORTHO05D005488 4.0e-27 126.3 245 37.6
Ca_29506_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 8.9e-27 125.2 241 39.0
Lj8A52T23 Lonicera japonica HOM05D004876 ORTHO05D005488 8.9e-27 125.2 113 59.3
Rhsim03G0153600 Rhododendron simsii HOM05D004876 ORTHO05D005488 8.9e-27 125.2 245 36.7
Gohir.A10G177600 Gossypium hirsutum HOM05D004876 ORTHO05D005488 2.0e-26 124.0 245 37.6
Aa31LG3G1350 Aethionema arabicum HOM05D004876 ORTHO05D005488 3.4e-26 123.2 235 37.4
CAN.G1229.8 Capsicum annuum HOM05D004876 ORTHO05D005488 5.8e-26 122.5 238 37.8
SEGI_18121 Sequoiadendron giganteum HOM05D004876 ORTHO05D005488 5.8e-26 122.5 242 35.1
Cc02_g05210 Coffea canephora HOM05D004876 ORTHO05D005488 1.3e-25 121.3 240 36.2
ECA247G1702 Erigeron canadensis HOM05D004876 ORTHO05D008274 1.7e-25 120.9 224 37.9
Lsat_1_v5_gn_5_104800 Lactuca sativa HOM05D004876 ORTHO05D005488 1.7e-25 120.9 240 38.3
THA.LOC104808402 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 2.9e-25 120.2 201 41.3
GSVIVG01038577001 Vitis vinifera HOM05D004876 ORTHO05D005488 2.9e-25 120.2 126 52.4
Nn2g10267 Nelumbo nucifera HOM05D004876 ORTHO05D005488 4.9e-25 119.4 119 58.0
PGSC0003DMG400011645 Solanum tuberosum HOM05D004876 ORTHO05D005488 6.4e-25 119.0 239 38.5
arahy.Tifrunner.gnm1.ann1.58ULDB Arachis hypogaea HOM05D004876 ORTHO05D005488 1.1e-24 118.2 106 58.5
MSTRG.8381 Avicennia marina HOM05D004876 ORTHO05D005488 1.4e-24 117.9 240 35.0
Aqoxy5G02193 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 2.4e-24 117.1 93 60.2
Rhsim04G0113200 Rhododendron simsii HOM05D004876 ORTHO05D005488 2.4e-24 117.1 254 35.0
Ca_16858_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 4.1e-24 116.3 258 36.8
SGA_v2.0_scaffold2G00887 Striga asiatica HOM05D004876 ORTHO05D005488 9.2e-24 115.2 230 37.0
Oeu006067.1 Olea europaea HOM05D004876 ORTHO05D005488 1.6e-23 114.4 250 32.8
Sc10g0003050 Simmondsia chinensis HOM05D004876 ORTHO05D005488 1.6e-23 114.4 195 39.0
Lj6g0009237 Lotus japonicus HOM05D004876 ORTHO05D005488 2.1e-23 114.0 239 36.4
Sopen05g030710 Solanum pennellii HOM05D004876 ORTHO05D005488 2.7e-23 113.6 237 35.4
BcaB01g03515 Brassica carinata HOM05D004876 ORTHO05D005488 4.6e-23 112.8 244 36.1
unitig_736.g22953 Utricularia gibba HOM05D004876 ORTHO05D005488 1.0e-22 111.7 240 35.4
Sopen03g025590 Solanum pennellii HOM05D004876 ORTHO05D005488 2.3e-22 110.5 115 50.4
Ah.11g051130 Amaranthus hybridus HOM05D004876 ORTHO05D005488 3.9e-22 109.8 225 36.0
Solyc05g052180.3 Solanum lycopersicum HOM05D004876 ORTHO05D005488 6.6e-22 109.0 232 35.3
Medtr3g093790 Medicago truncatula HOM05D004876 ORTHO05D005488 1.1e-21 108.2 106 55.7
Peaxi162Scf00167g01129 Petunia axillaris HOM05D004876 ORTHO05D005488 1.9e-21 107.5 211 36.0
TPR.G24790 Trifolium pratense HOM05D004876 ORTHO05D005488 1.9e-21 107.5 76 72.4
Eucgr.G03147 Eucalyptus grandis HOM05D004876 ORTHO05D005488 2.5e-21 107.1 106 52.8
Pp3c16_8280 Physcomitrium patens HOM05D004876 ORTHO05D005488 3.3e-21 106.7 254 32.7
Mapoly0014s0200 Marchantia polymorpha HOM05D004876 ORTHO05D005488 2.1e-20 104.0 243 33.3
Lsat_1_v5_gn_2_126741 Lactuca sativa HOM05D004876 ORTHO05D005488 2.8e-20 103.6 240 33.8
PGSC0003DMG400020604 Solanum tuberosum HOM05D004876 ORTHO05D005488 3.1e-19 100.1 106 50.0
SalBow7G3110 Salvia bowleyana HOM05D004876 ORTHO05D005488 6.8e-19 99.0 247 34.0
BcaC02g12879 Brassica carinata HOM05D004876 ORTHO05D005488 2.0e-18 97.4 203 36.9
BcaB05g22749 Brassica carinata HOM05D004876 ORTHO05D005488 7.6e-18 95.5 201 34.3
Nitab4.5_0008902g0030 Nicotiana tabacum HOM05D004876 ORTHO05D005488 1.7e-17 94.4 240 32.1
AagrBONN_evm.TU.Sc2ySwM_368.2679 Anthoceros agrestis HOM05D004876 ORTHO05D005488 2.5e-13 80.5 106 38.7
Actinidia13638 Actinidia chinensis HOM05D004876 ORTHO05D005488 8.1e-12 75.5 198 31.8
AL4G14440 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 7.6e-10 68.9 62 54.8
Nn1g06656 Nelumbo nucifera HOM05D004876 ORTHO05D005488 1.7e-09 67.8 176 33.0
Cre03.g155800 Chlamydomonas reinhardtii HOM05D004876 ORTHO05D005488 7.8e-07 58.9 103 33.0
MCO11G196 Micromonas commoda HOM05D004876 ORTHO05D005488 2.3e-06 57.4 108 32.4
Nitab4.5_0001671g0020 Nicotiana tabacum HOM05D004876 ORTHO05D005488 3.0e-06 57.0 67 53.7
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 6.6e-06 55.8 67 46.3


User provided reference genes

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