Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G0671 Fragaria x ananassa HOM05D006471 ORTHO05D008157 2.7e-186 655.2 343 100.0
FvH4_4g37140 Fragaria vesca HOM05D006471 ORTHO05D008157 1.2e-170 603.2 379 82.8
FAN07G1501 Fragaria x ananassa HOM05D002605 ORTHO05D002842 2.6e-168 595.5 329 95.7
RcHm_v2.0_Chr4g0446941 Rosa chinensis HOM05D006471 ORTHO05D008157 7.3e-147 524.2 380 77.9
MD16G1004200 Malus domestica HOM05D006471 ORTHO05D008157 8.2e-106 387.9 293 69.3
CiPaw.05G172000 Carya illinoinensis HOM05D006471 ORTHO05D008157 1.2e-101 374.0 259 70.7
Prupe.1G349200 Prunus persica HOM05D006471 ORTHO05D008157 1.2e-101 374.0 241 75.5
Cfa008776 Carpinus fangiana HOM05D006471 ORTHO05D008157 1.8e-100 370.2 259 71.8
Glyma.10G286400 Glycine max HOM05D006471 ORTHO05D008157 2.3e-100 369.8 260 71.5
TPR.G4059 Trifolium pratense HOM05D006471 ORTHO05D008157 2.3e-100 369.8 260 70.8
Haze_11788 Corylus avellana HOM05D006471 ORTHO05D008157 3.0e-100 369.4 259 71.4
Psat6g234000 Pisum sativum HOM05D006471 ORTHO05D008157 6.7e-100 368.2 260 70.0
CANSAT78G1799 Cannabis sativa HOM05D006471 ORTHO05D008157 1.5e-99 367.1 365 55.9
Medtr1g114560 Medicago truncatula HOM05D006471 ORTHO05D008157 2.0e-99 366.7 260 70.8
Ca_11258_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 3.3e-99 365.9 260 70.0
GSVIVG01034416001 Vitis vinifera HOM05D006471 ORTHO05D008157 1.2e-96 357.5 258 70.2
Cfa014781 Carpinus fangiana HOM05D006857 ORTHO05D008679 2.0e-96 356.7 240 73.3
Dinv17647 Davidia involucrata HOM05D000200 ORTHO05D001546 1.3e-95 354.0 261 65.5
Lj5g0013377 Lotus japonicus HOM05D006471 ORTHO05D008157 1.7e-95 353.6 260 68.8
VMungo0720G2382 Vigna mungo HOM05D006471 ORTHO05D008157 2.2e-95 353.2 260 69.6
Ciclev10031833m.g Citrus clementina HOM05D006471 ORTHO05D008157 1.1e-94 350.9 385 51.7
Eucgr.G02586 Eucalyptus grandis HOM05D006471 ORTHO05D008157 7.2e-94 348.2 259 66.0
Manes.04G162800 Manihot esculenta HOM05D006471 ORTHO05D008157 7.2e-94 348.2 382 53.1
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 9.4e-94 347.8 246 71.1
Phvul.007G014500 Phaseolus vulgaris HOM05D006471 ORTHO05D008157 1.0e-92 344.4 260 67.3
CSS0032634 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 1.4e-92 344.0 258 66.7
Hma1.2p1_0044F.1_g026290 Hydrangea macrophylla HOM05D006471 ORTHO05D008157 1.4e-92 344.0 285 62.5
Lalb_Chr06g0163931 Lupinus albus HOM05D006471 ORTHO05D008157 2.3e-92 343.2 285 61.8
Lj3A846G60 Lonicera japonica HOM05D006471 ORTHO05D008157 3.0e-92 342.8 259 66.0
CSS0035224 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 5.1e-92 342.0 258 66.3
Actinidia04343 Actinidia chinensis HOM05D006471 ORTHO05D008157 8.8e-92 341.3 259 66.8
CsaV3_5G029010 Cucumis sativus L. HOM05D006471 ORTHO05D008157 2.6e-91 339.7 312 57.7
Sopen04g004170 Solanum pennellii HOM05D006471 ORTHO05D008157 2.6e-91 339.7 261 64.8
TAR628G0373 Trochodendron aralioides HOM05D006471 ORTHO05D008157 2.6e-91 339.7 259 66.0
Rhsim12G0193800 Rhododendron simsii HOM05D006471 ORTHO05D008157 4.4e-91 339.0 259 66.0
Solyc04g008990.3 Solanum lycopersicum HOM05D006471 ORTHO05D008157 7.4e-91 338.2 258 65.1
Potri.007G075500 Populus trichocarpa HOM05D006471 ORTHO05D008157 9.7e-91 337.8 264 67.0
PGSC0003DMG400011512 Solanum tuberosum HOM05D006471 ORTHO05D008157 2.8e-90 336.3 261 64.8
Atru.chr11.1240 Acer truncatum HOM05D006471 ORTHO05D008157 3.7e-90 335.9 263 65.0
Duzib248G0471 Durio zibethinus HOM05D000200 ORTHO05D001546 1.4e-89 334.0 262 64.9
Sabra07G0063800 Salix brachista HOM05D006471 ORTHO05D008157 1.4e-89 334.0 264 65.9
vmacro16923 Vaccinium macrocarpon HOM05D006471 ORTHO05D008157 1.4e-89 334.0 261 64.8
QL08p056974 Quercus lobata HOM05D006471 ORTHO05D008157 1.8e-89 333.6 230 70.9
Sed0003381 Sechium edule HOM05D006471 ORTHO05D008157 4.1e-89 332.4 280 61.8
Gohir.D04G148900 Gossypium hirsutum HOM05D006471 ORTHO05D008157 5.3e-89 332.0 263 64.3
Gorai.012G135400 Gossypium raimondii HOM05D006471 ORTHO05D008157 5.3e-89 332.0 263 64.3
ClCG02G014150 Citrullus lanatus HOM05D006471 ORTHO05D008157 7.0e-89 331.6 317 55.2
Thecc.02G154800 Theobroma cacao HOM05D006471 ORTHO05D008157 9.1e-89 331.3 262 65.3
CAN.G274.15 Capsicum annuum HOM05D006471 ORTHO05D008157 1.5e-88 330.5 261 63.2
Nn8g40194 Nelumbo nucifera HOM05D006471 ORTHO05D008157 2.0e-88 330.1 257 64.6
Peaxi162Scf00681g00221 Petunia axillaris HOM05D006471 ORTHO05D008157 2.6e-88 329.7 289 59.2
COL.COLO4_33107 Corchorus olitorius HOM05D006471 ORTHO05D008157 4.5e-88 328.9 262 63.7
Gohir.A04G109424 Gossypium hirsutum HOM05D006471 ORTHO05D008157 4.5e-88 328.9 263 63.9
MSTRG.428 Avicennia marina HOM05D006471 ORTHO05D008157 7.7e-88 328.2 285 58.9
MSTRG.8091 Avicennia marina HOM05D006471 ORTHO05D008157 1.0e-87 327.8 259 64.5
Aqoxy2G00030 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 1.3e-87 327.4 284 59.5
Sc10g0006980 Simmondsia chinensis HOM05D006471 ORTHO05D008157 1.3e-87 327.4 259 62.5
Cpa.g.sc60.91 Carica papaya HOM05D006471 ORTHO05D008157 1.7e-87 327.0 249 68.3
AUR62032950 Chenopodium quinoa HOM05D006471 ORTHO05D008157 3.8e-87 325.9 285 61.1
Migut.L00869 Erythranthe guttata HOM05D006471 ORTHO05D008157 3.8e-87 325.9 262 62.6
Duzib132G0448 Durio zibethinus HOM05D006471 ORTHO05D008157 5.0e-87 325.5 262 63.0
Nitab4.5_0005997g0050 Nicotiana tabacum HOM05D006471 ORTHO05D008157 5.0e-87 325.5 236 67.8
Nitab4.5_0004979g0070 Nicotiana tabacum HOM05D006471 ORTHO05D008157 8.5e-87 324.7 236 66.9
Aqoxy2G01235 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 1.1e-86 324.3 284 59.5
arahy.Tifrunner.gnm1.ann1.V4ETXF Arachis hypogaea HOM05D006471 ORTHO05D008157 1.9e-86 323.6 326 55.5
CARHR204730 Cardamine hirsuta HOM05D006471 ORTHO05D008157 1.9e-86 323.6 258 64.3
Thhalv10013886m.g Eutrema salsugineum HOM05D006471 ORTHO05D008157 9.4e-86 321.2 258 63.6
Carub.0006s0724 Capsella rubella HOM05D006471 ORTHO05D008157 1.2e-85 320.9 257 65.8
AL6G18780 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 2.1e-85 320.1 258 64.7
Nn2g12513 Nelumbo nucifera HOM05D006471 ORTHO05D008157 3.6e-85 319.3 259 61.0
TWI74G1585 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 3.6e-85 319.3 262 65.3
AUR62017731 Chenopodium quinoa HOM05D006471 ORTHO05D008157 4.7e-85 318.9 283 60.1
DCAR_002605 Daucus carota HOM05D000200 ORTHO05D001546 4.7e-85 318.9 255 63.1
Sp6g34600 Schrenkiella parvula HOM05D006471 ORTHO05D008157 8.0e-85 318.2 258 62.8
SalBow2G1748 Salvia bowleyana HOM05D006471 ORTHO05D008157 5.2e-84 315.5 260 60.4
TWI77G0721 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 6.7e-84 315.1 262 65.6
HanXRQChr03g0076951 Helianthus annuus HOM05D006471 ORTHO05D008157 8.8e-84 314.7 258 60.9
PGR142G1667 Punica granatum HOM05D006471 ORTHO05D008157 1.1e-83 314.3 371 52.6
EL10Ac9g22981 Beta vulgaris HOM05D006471 ORTHO05D008157 2.6e-83 313.2 257 63.0
BcaB01g05611 Brassica carinata HOM05D006471 ORTHO05D008157 2.6e-83 313.2 258 63.2
BcaB01g05607 Brassica carinata HOM05D006471 ORTHO05D008157 3.3e-83 312.8 297 57.9
MBI06_g44273_MAGBIO Magnolia biondii HOM05D006471 ORTHO05D008157 5.7e-83 312.0 261 62.1
AT5G08340 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 1.3e-82 310.8 258 62.8
SGA_v2.0_scaffold92G28263 Striga asiatica HOM05D006471 ORTHO05D008157 1.7e-82 310.5 264 59.5
A03p03780 Brassica napus HOM05D006471 ORTHO05D008157 2.8e-82 309.7 259 63.7
BraA03t09725Z Brassica rapa HOM05D006471 ORTHO05D008157 2.8e-82 309.7 259 63.7
Lsat_1_v5_gn_0_15460 Lactuca sativa HOM05D006471 ORTHO05D008157 4.8e-82 308.9 261 62.1
C03p04260 Brassica napus HOM05D006471 ORTHO05D008157 8.2e-82 308.1 298 57.7
BolC3t12958H Brassica oleracea HOM05D006471 ORTHO05D008157 8.2e-82 308.1 298 57.7
PSO782G0560 Papaver somniferum HOM05D006471 ORTHO05D008157 1.4e-81 307.4 285 56.5
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 2.4e-81 306.6 258 61.2
PSO170G1614 Papaver somniferum HOM05D006471 ORTHO05D008157 2.4e-81 306.6 259 59.8
Ah.16g106450 Amaranthus hybridus HOM05D000154 ORTHO05D000092 2.0e-80 303.5 260 61.2
CDE02G4670 Ceratophyllum demersum HOM05D006471 ORTHO05D008157 3.5e-80 302.8 262 58.0
MELO3C011756.2 Cucumis melo HOM05D006471 ORTHO05D008157 3.5e-80 302.8 372 46.8
THA.LOC104800739 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 5.9e-80 302.0 260 60.8
THA.LOC104818378 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 1.9e-78 297.0 260 58.1
AT5G23330 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 4.2e-78 295.8 260 56.5
AL6G34590 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 2.1e-77 293.5 261 57.5
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 3.0e-76 289.7 264 58.0
ATR0665G473 Amborella trichopoda HOM05D006471 ORTHO05D008157 2.6e-75 286.6 259 57.5
unitig_749.g13340 Utricularia gibba HOM05D006471 ORTHO05D008157 3.4e-75 286.2 248 56.0
SGA_v2.0_scaffold42G16129 Striga asiatica HOM05D006471 ORTHO05D008157 9.7e-75 284.6 298 52.3
CARHR190210 Cardamine hirsuta HOM05D006471 ORTHO05D008157 2.8e-74 283.1 261 56.7
Os03g0801700 Oryza sativa ssp. japonica HOM05D006471 ORTHO05D008157 1.1e-73 281.2 259 56.0
Zm00001eb061200 Zea mays HOM05D006471 ORTHO05D008157 5.3e-73 278.9 262 55.7
ECA240G3241 Erigeron canadensis HOM05D006471 ORTHO05D008157 1.2e-72 277.7 212 63.7
Cc00_g09970 Coffea canephora HOM05D006471 ORTHO05D008157 5.9e-72 275.4 257 58.0
Oeu006329.1 Olea europaea HOM05D006471 ORTHO05D008157 2.2e-71 273.5 259 54.4
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 2.9e-71 273.1 225 60.4
FAN12G2193 Fragaria x ananassa HOM05D006471 ORTHO05D008157 2.5e-70 270.0 137 94.9
HPP92_017784 Vanilla planifolia HOM05D006471 ORTHO05D008157 2.1e-69 266.9 239 56.9
SEGI_40912 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 8.3e-66 255.0 260 51.5
Carub.0006s2111 Capsella rubella HOM05D006471 ORTHO05D008157 2.1e-61 240.4 211 56.9
MD13G1003200 Malus domestica HOM05D006471 ORTHO05D008157 1.5e-59 234.2 165 72.7
Pp3c5_28930 Physcomitrium patens HOM05D006471 ORTHO05D008157 4.5e-56 222.6 258 45.3
Mapoly0019s0104 Marchantia polymorpha HOM05D006471 ORTHO05D008157 2.9e-55 219.9 284 43.0
Glyma.20G102800 Glycine max HOM05D006471 ORTHO05D008157 1.5e-54 217.6 260 48.5
Pp3c14_5150 Physcomitrium patens HOM05D006471 ORTHO05D008157 2.8e-53 213.4 249 45.0
SMO141G0020 Selaginella moellendorffii HOM05D006471 ORTHO05D008157 1.5e-51 207.6 187 52.4
Sc06g0004050 Simmondsia chinensis HOM05D006471 ORTHO05D008157 4.9e-34 149.4 188 48.4
MCO07G267 Micromonas commoda HOM05D006471 ORTHO05D008157 1.9e-33 147.5 225 40.4
AagrBONN_evm.TU.Sc2ySwM_362.1554 Anthoceros agrestis HOM05D006471 ORTHO05D008157 1.6e-29 134.4 113 53.1
Cre13.g607600 Chlamydomonas reinhardtii HOM05D006471 ORTHO05D008157 2.4e-17 94.0 280 27.9
BolC9t53696H Brassica oleracea HOM05D006471 ORTHO05D008157 3.8e-10 70.1 83 43.4
QL08p056966 Quercus lobata HOM05D006471 ORTHO05D008157 3.0e-07 60.5 34 79.4
RcHm_v2.0_Chr5g0081501 Rosa chinensis HOM05D056344 ORTHO05D008157 5.1e-07 59.7 92 45.7
RcHm_v2.0_Chr7g0231651 Rosa chinensis HOM05D056344 ORTHO05D004689 3.3e-06 57.0 85 47.1


User provided reference genes

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