Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.2e-95 353.2 190 100.0
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.9e-76 288.9 157 98.1
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.9e-76 288.9 157 97.5
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.9e-76 288.9 157 98.1
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.4e-75 285.8 157 96.8
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.4e-75 285.8 157 97.5
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 5.4e-75 284.6 157 95.5
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.2e-71 273.5 160 93.1
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 6.2e-71 271.2 160 91.9
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.5e-69 266.5 160 91.2
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 5.8e-69 264.6 150 92.7
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 7.1e-67 257.7 142 95.1
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 8.1e-63 244.2 155 84.5
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.7e-60 236.5 128 96.9
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 3.8e-60 235.3 155 81.3
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 6.4e-60 234.6 157 80.3
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 1.0e-57 227.3 144 80.6
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 5.1e-57 224.9 122 95.1
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 5.1e-57 224.9 122 95.1
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 1.5e-56 223.4 122 94.3
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 1.9e-56 223.0 122 94.3
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 4.3e-56 221.9 141 78.7
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 4.3e-56 221.9 152 71.7
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 7.3e-56 221.1 122 93.4
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 9.6e-56 220.7 141 76.6
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 1.3e-55 220.3 122 93.4
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 1.3e-55 220.3 141 80.1
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 2.1e-55 219.5 148 75.0
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 2.1e-55 219.5 141 79.4
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 2.1e-55 219.5 146 74.7
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 2.1e-55 219.5 142 74.6
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 2.8e-55 219.2 142 77.5
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 2.8e-55 219.2 142 76.1
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 2.8e-55 219.2 122 92.6
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 4.8e-55 218.4 142 79.6
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 4.8e-55 218.4 140 78.6
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 4.8e-55 218.4 140 78.6
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 6.2e-55 218.0 141 80.1
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 6.2e-55 218.0 143 76.9
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 8.1e-55 217.6 142 76.1
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 1.1e-54 217.2 146 76.7
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.1e-54 217.2 142 75.4
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 1.8e-54 216.5 139 77.7
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 2.4e-54 216.1 139 77.0
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 4.0e-54 215.3 122 91.8
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 5.3e-54 214.9 141 77.3
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 5.3e-54 214.9 153 71.9
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 5.3e-54 214.9 148 73.6
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 5.3e-54 214.9 146 73.3
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 9.0e-54 214.2 140 76.4
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 1.2e-53 213.8 141 79.4
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 1.5e-53 213.4 140 76.4
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 1.5e-53 213.4 140 75.0
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 1.5e-53 213.4 138 76.8
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 1.5e-53 213.4 138 76.8
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 2.0e-53 213.0 154 68.8
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 2.6e-53 212.6 161 67.7
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 2.6e-53 212.6 150 74.7
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 4.4e-53 211.8 140 76.4
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 5.8e-53 211.5 141 75.2
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 7.6e-53 211.1 142 71.1
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 7.6e-53 211.1 142 71.1
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 9.9e-53 210.7 139 77.0
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 9.9e-53 210.7 141 73.8
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 1.3e-52 210.3 144 72.9
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 1.7e-52 209.9 143 73.4
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 1.7e-52 209.9 146 74.0
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 1.7e-52 209.9 146 71.2
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.7e-52 209.9 141 75.2
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 2.2e-52 209.5 141 79.4
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 2.2e-52 209.5 140 74.3
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 2.2e-52 209.5 139 77.0
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 2.2e-52 209.5 141 75.2
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.9e-52 209.1 143 73.4
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 4.9e-52 208.4 152 70.4
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 8.4e-52 207.6 149 71.8
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 8.4e-52 207.6 140 73.6
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 1.4e-51 206.8 140 75.7
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 1.9e-51 206.5 140 74.3
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 1.9e-51 206.5 149 71.1
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 4.2e-51 205.3 147 70.7
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 4.2e-51 205.3 143 72.0
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 4.2e-51 205.3 133 76.7
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 5.4e-51 204.9 142 73.2
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 5.4e-51 204.9 142 73.2
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 5.4e-51 204.9 142 73.2
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 5.4e-51 204.9 172 65.1
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 7.1e-51 204.5 143 71.3
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 7.1e-51 204.5 143 71.3
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 7.1e-51 204.5 140 73.6
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 7.1e-51 204.5 147 72.1
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 9.3e-51 204.1 143 71.3
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 9.3e-51 204.1 143 71.3
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 9.3e-51 204.1 143 71.3
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 1.2e-50 203.8 143 70.6
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 1.6e-50 203.4 141 73.8
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 1.6e-50 203.4 142 71.8
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 1.6e-50 203.4 140 72.1
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 2.1e-50 203.0 140 73.6
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 2.1e-50 203.0 140 72.1
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 2.7e-50 202.6 140 72.1
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 2.7e-50 202.6 146 71.2
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 3.5e-50 202.2 146 69.2
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 3.5e-50 202.2 146 69.2
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 3.5e-50 202.2 149 69.8
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 1.0e-49 200.7 185 59.5
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 1.1e-48 197.2 140 69.3
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 1.5e-48 196.8 140 72.9
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 1.9e-48 196.4 147 69.4
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 5.6e-48 194.9 153 66.0
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 1.8e-46 189.9 127 76.4
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 2.4e-46 189.5 180 58.9
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 5.3e-46 188.3 199 51.8
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 4.5e-45 185.3 209 51.7
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 5.8e-45 184.9 116 80.2
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 2.2e-44 183.0 116 77.6
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 2.2e-44 183.0 126 71.4
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 3.8e-44 182.2 121 75.2
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 4.9e-44 181.8 115 77.4
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 6.4e-44 181.4 151 62.3
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 8.4e-44 181.0 125 75.2
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 1.4e-43 180.3 121 75.2
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 1.4e-43 180.3 214 49.5
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 2.4e-43 179.5 116 75.0
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 3.2e-43 179.1 118 75.4
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 1.0e-41 174.1 227 46.3
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 1.1e-40 170.6 142 59.9
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 1.5e-40 170.2 122 68.9
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.9e-40 169.9 135 65.2
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 3.3e-40 169.1 141 58.2
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 4.3e-40 168.7 137 58.4
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 7.4e-40 167.9 116 72.4
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 7.4e-40 167.9 116 72.4
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 9.6e-40 167.5 138 64.5
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 2.1e-39 166.4 136 61.8
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 6.2e-39 164.9 165 50.3
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 1.6e-34 150.2 155 56.1
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 3.0e-33 146.0 88 85.2
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 6.3e-31 138.3 87 80.5
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.4e-30 137.1 88 79.5
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 1.8e-30 136.7 78 93.6
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 1.8e-30 136.7 78 93.6
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 1.2e-29 134.0 78 91.0
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 6.5e-28 128.3 94 75.5
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 2.5e-27 126.3 72 94.4
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 5.5e-27 125.2 136 52.9
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 3.9e-25 119.0 200 38.5
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 5.1e-25 118.6 146 44.5
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 5.7e-24 115.2 82 62.2
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 7.4e-24 114.8 70 80.0
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 9.0e-22 107.8 137 40.1
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 2.2e-20 103.2 64 79.7
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 1.9e-19 100.1 73 63.0
FAN03G3288 Fragaria x ananassa HOM05D004221 ORTHO05D205401 7.4e-16 88.2 204 39.7
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 6.3e-15 85.1 59 64.4
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.1e-14 84.3 65 60.0
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 5.3e-14 82.0 142 33.8
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 2.6e-13 79.7 67 55.2
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 5.9e-13 78.6 61 68.9
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 2.9e-12 76.3 134 30.6
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 3.8e-12 75.9 61 67.2
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 1.4e-11 73.9 54 68.5
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 3.2e-11 72.8 55 69.1
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 3.2e-11 72.8 55 69.1
Oeu013194.1 Olea europaea HOM05D004221 ORTHO05D004998 4.2e-11 72.4 49 65.3
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 4.8e-07 58.9 53 49.1


User provided reference genes

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