Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G0591 Fragaria x ananassa HOM05D006838 ORTHO05D008915 5.5e-86 320.9 155 100.0
FAN12G2261 Fragaria x ananassa HOM05D006838 ORTHO05D008915 9.2e-65 250.4 168 79.8
FvH4_4g16340 Fragaria vesca HOM05D006838 ORTHO05D008915 1.0e-55 220.3 107 98.1
RcHm_v2.0_Chr4g0416051 Rosa chinensis HOM05D006838 ORTHO05D008915 5.6e-54 214.5 106 96.2
Haze_00889 Corylus avellana HOM05D000001 ORTHO05D000003 3.5e-48 195.3 107 85.0
TWI73G0194 Tripterygium wilfordii HOM05D006838 ORTHO05D008915 6.0e-48 194.5 104 85.6
Cfa015659 Carpinus fangiana HOM05D006838 ORTHO05D008915 1.0e-47 193.7 107 83.2
QL06p002133 Quercus lobata HOM05D006838 ORTHO05D008915 1.7e-47 193.0 107 85.0
Prupe.1G014900 Prunus persica HOM05D006838 ORTHO05D008915 3.9e-47 191.8 107 86.9
MD13G1194100 Malus domestica HOM05D006838 ORTHO05D008915 6.6e-47 191.0 105 83.8
Manes.03G177700 Manihot esculenta HOM05D006838 ORTHO05D008915 1.9e-46 189.5 104 86.5
CANSAT78G0040 Cannabis sativa HOM05D006838 ORTHO05D008915 2.5e-46 189.1 103 83.5
Ciclev10006131m.g Citrus clementina HOM05D006838 ORTHO05D008915 1.1e-44 183.7 100 83.0
Atru.chr4.2454 Acer truncatum HOM05D006838 ORTHO05D008915 1.5e-43 179.9 104 77.9
Gohir.D01G021700 Gossypium hirsutum HOM05D006838 ORTHO05D008915 1.5e-43 179.9 104 80.8
Gorai.002G024200 Gossypium raimondii HOM05D006838 ORTHO05D008915 1.5e-43 179.9 104 80.8
CiPaw.01G167000 Carya illinoinensis HOM05D006838 ORTHO05D008915 2.6e-43 179.1 107 81.3
Duzib052G0907 Durio zibethinus HOM05D006838 ORTHO05D008915 3.4e-43 178.7 104 80.8
Gohir.A01G023700 Gossypium hirsutum HOM05D006838 ORTHO05D008915 7.6e-43 177.6 104 79.8
Cpa.g.sc58.98 Carica papaya HOM05D006838 ORTHO05D008915 9.9e-43 177.2 104 78.8
Thecc.04G232900 Theobroma cacao HOM05D006838 ORTHO05D008915 9.9e-43 177.2 104 82.7
arahy.Tifrunner.gnm1.ann1.00V3DL Arachis hypogaea HOM05D006838 ORTHO05D008915 6.4e-42 174.5 105 77.1
TPR.G37905 Trifolium pratense HOM05D006838 ORTHO05D008915 8.4e-42 174.1 106 75.5
arahy.Tifrunner.gnm1.ann1.08EL86 Arachis hypogaea HOM05D006838 ORTHO05D008915 1.4e-41 173.3 105 75.2
CsaV3_7G022460 Cucumis sativus L. HOM05D006838 ORTHO05D008915 3.2e-41 172.2 109 75.2
Medtr5g006360 Medicago truncatula HOM05D006838 ORTHO05D008915 4.2e-41 171.8 101 77.2
CARHR125890 Cardamine hirsuta HOM05D006838 ORTHO05D008915 5.4e-41 171.4 98 77.6
Psat4g210280 Pisum sativum HOM05D006838 ORTHO05D008915 5.4e-41 171.4 102 75.5
LjContig00408g0014048 Lotus japonicus HOM05D006838 ORTHO05D008915 7.1e-41 171.0 103 74.8
Ca_24400_v3 Cicer arietinum L. HOM05D006838 ORTHO05D008915 1.6e-40 169.9 108 73.1
Dinv13999 Davidia involucrata HOM05D006838 ORTHO05D008915 1.6e-40 169.9 104 77.9
Cc03_g03870 Coffea canephora HOM05D006838 ORTHO05D008915 3.5e-40 168.7 107 73.8
Dinv44539 Davidia involucrata HOM05D006838 ORTHO05D008915 3.5e-40 168.7 104 74.0
Aa31LG5G4930 Aethionema arabicum HOM05D006838 ORTHO05D008915 6.0e-40 167.9 104 72.1
AL4G27470 Arabidopsis lyrata HOM05D006838 ORTHO05D008915 7.8e-40 167.5 98 76.5
MELO3C012654.2 Cucumis melo HOM05D006838 ORTHO05D008915 1.7e-39 166.4 109 74.3
Hund12124 Selenicereus undatus HOM05D006838 ORTHO05D008915 1.7e-39 166.4 104 72.1
AL103U10040 Arabidopsis lyrata HOM05D006838 ORTHO05D008915 3.9e-39 165.2 98 76.5
Thhalv10017983m.g Eutrema salsugineum HOM05D006838 ORTHO05D008915 3.9e-39 165.2 98 74.5
Sp4g14500 Schrenkiella parvula HOM05D006838 ORTHO05D008915 5.1e-39 164.9 98 74.5
THA.LOC104816050 Tarenaya hassleriana HOM05D006838 ORTHO05D008915 5.1e-39 164.9 106 73.6
Eucgr.H03458 Eucalyptus grandis HOM05D006838 ORTHO05D008915 6.6e-39 164.5 103 75.7
Sed0026467 Sechium edule HOM05D006838 ORTHO05D008915 1.1e-38 163.7 109 72.5
AT2G32090 Arabidopsis thaliana HOM05D006838 ORTHO05D008915 1.5e-38 163.3 98 73.5
Eucgr.H03460 Eucalyptus grandis HOM05D006838 ORTHO05D008915 1.5e-38 163.3 103 74.8
C04p17530 Brassica napus HOM05D006838 ORTHO05D008915 1.9e-38 162.9 98 73.5
BolC4t23300H Brassica oleracea HOM05D006838 ORTHO05D008915 1.9e-38 162.9 98 73.5
Nn4g26336 Nelumbo nucifera HOM05D006838 ORTHO05D008915 1.9e-38 162.9 104 70.2
Potri.010G087000 Populus trichocarpa HOM05D006838 ORTHO05D008915 1.9e-38 162.9 104 72.1
Sabra08G0117200 Salix brachista HOM05D006838 ORTHO05D008915 1.9e-38 162.9 104 75.0
vmacro15346 Vaccinium macrocarpon HOM05D006838 ORTHO05D008915 3.3e-38 162.2 149 55.0
EL10Ac3g06416 Beta vulgaris HOM05D006838 ORTHO05D008915 4.3e-38 161.8 104 71.2
Nitab4.5_0000316g0010 Nicotiana tabacum HOM05D006838 ORTHO05D008915 5.6e-38 161.4 103 74.8
A05p13410 Brassica napus HOM05D006838 ORTHO05D008915 7.3e-38 161.0 98 73.5
BraA05t20279Z Brassica rapa HOM05D006838 ORTHO05D008915 2.1e-37 159.5 98 72.4
CAN.G1094.4 Capsicum annuum HOM05D006838 ORTHO05D008915 2.1e-37 159.5 102 70.6
Nitab4.5_0001342g0050 Nicotiana tabacum HOM05D006838 ORTHO05D008915 2.1e-37 159.5 103 73.8
PGR004G0798 Punica granatum HOM05D006838 ORTHO05D008915 2.8e-37 159.1 104 75.0
Solyc09g082115.1 Solanum lycopersicum HOM05D006838 ORTHO05D008915 4.8e-37 158.3 102 69.6
BcaB02g10450 Brassica carinata HOM05D006838 ORTHO05D008915 6.2e-37 157.9 99 72.7
AUR62038604 Chenopodium quinoa HOM05D006838 ORTHO05D008915 6.2e-37 157.9 104 66.3
TAR365G1174 Trochodendron aralioides HOM05D006838 ORTHO05D008915 6.2e-37 157.9 104 69.2
SHI00446 Sapria himalayana HOM05D006838 ORTHO05D008915 8.1e-37 157.5 105 66.7
Ah.13g072770 Amaranthus hybridus HOM05D006838 ORTHO05D008915 1.1e-36 157.1 106 68.9
Rhsim02G0025700 Rhododendron simsii HOM05D000001 ORTHO05D000003 1.1e-36 157.1 104 72.1
AUR62033621 Chenopodium quinoa HOM05D006838 ORTHO05D008915 1.4e-36 156.8 104 64.4
Actinidia08489 Actinidia chinensis HOM05D006838 ORTHO05D008915 1.8e-36 156.4 104 71.2
CSS0050318 Camellia sinensis var. sinensis HOM05D006838 ORTHO05D008915 3.1e-36 155.6 104 72.1
Carub.0004s1344 Capsella rubella HOM05D006838 ORTHO05D008915 3.1e-36 155.6 98 71.4
Sopen09g031000 Solanum pennellii HOM05D006838 ORTHO05D008915 3.1e-36 155.6 102 67.6
Sc13g0004470 Simmondsia chinensis HOM05D006838 ORTHO05D008915 4.0e-36 155.2 104 68.3
SalBow2G1460 Salvia bowleyana HOM05D001359 ORTHO05D001200 5.3e-36 154.8 107 67.3
PGSC0003DMG400032255 Solanum tuberosum HOM05D006838 ORTHO05D008915 6.9e-36 154.5 102 68.6
Peaxi162Scf00092g00717 Petunia axillaris HOM05D006838 ORTHO05D008915 9.0e-36 154.1 103 71.8
DCAR_030640 Daucus carota HOM05D006838 ORTHO05D008915 3.4e-35 152.1 102 69.6
MBI11_g31274_MAGBIO Magnolia biondii HOM05D002513 ORTHO05D002720 3.4e-35 152.1 113 61.9
Lsat_1_v5_gn_5_35680 Lactuca sativa HOM05D006838 ORTHO05D008915 1.3e-34 150.2 102 70.6
MSTRG.4035 Avicennia marina HOM05D006838 ORTHO05D008915 3.8e-34 148.7 104 66.3
Lsat_1_v5_gn_5_35600 Lactuca sativa HOM05D006838 ORTHO05D008915 3.8e-34 148.7 102 68.6
Aqoxy5G00461 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 4.9e-34 148.3 115 59.1
GSVIVG01017987001 Vitis vinifera HOM05D006838 ORTHO05D008915 3.2e-33 145.6 134 49.3
SGA_v2.0_scaffold39G15215 Striga asiatica HOM05D006838 ORTHO05D008915 9.3e-33 144.1 107 67.3
PSO832G4526 Papaver somniferum HOM05D006838 ORTHO05D008915 1.6e-32 143.3 102 59.8
ECA246G0107 Erigeron canadensis HOM05D006838 ORTHO05D008915 2.1e-32 142.9 106 65.1
Migut.G00344 Erythranthe guttata HOM05D006838 ORTHO05D008915 2.7e-32 142.5 98 68.4
unitig_32.g11729 Utricularia gibba HOM05D006838 ORTHO05D008915 2.7e-32 142.5 104 66.3
HanXRQChr10g0288871 Helianthus annuus HOM05D006838 ORTHO05D008915 3.5e-32 142.1 109 66.1
FvH4_1g03680 Fragaria vesca HOM05D006838 ORTHO05D008915 6.0e-32 141.4 108 63.9
RcHm_v2.0_Chr4g0409411 Rosa chinensis HOM05D006838 ORTHO05D008915 1.0e-31 140.6 107 63.6
PSO210G6947 Papaver somniferum HOM05D006838 ORTHO05D008915 1.3e-31 140.2 102 57.8
SalBow2G1378 Salvia bowleyana HOM05D006838 ORTHO05D008915 2.3e-31 139.4 127 55.9
FAN22G1840 Fragaria x ananassa HOM05D006838 ORTHO05D008915 3.9e-31 138.7 105 64.8
FAN19G3212 Fragaria x ananassa HOM05D006838 ORTHO05D008915 1.3e-29 133.7 106 63.2
MBI11_g31275_MAGBIO Magnolia biondii HOM05D006838 ORTHO05D008915 2.1e-29 132.9 108 58.3
Aqoxy6G02670 Aquilegia oxysepala HOM05D006838 ORTHO05D008915 2.8e-29 132.5 90 66.7
COL.COLO4_21487 Corchorus olitorius HOM05D006838 ORTHO05D000003 4.8e-29 131.7 82 76.8
CDE05G3614 Ceratophyllum demersum HOM05D006838 ORTHO05D008915 3.1e-28 129.0 130 48.5
Actinidia36957 Actinidia chinensis HOM05D006838 ORTHO05D008915 5.3e-28 128.3 104 61.5
Medtr5g006370 Medicago truncatula HOM05D006838 ORTHO05D008915 2.6e-27 125.9 105 56.2
MBI12_g03925_MAGBIO Magnolia biondii HOM05D006838 ORTHO05D008915 5.8e-27 124.8 107 55.1
TPR.G14291 Trifolium pratense HOM05D006838 ORTHO05D008915 4.9e-26 121.7 110 53.6
RcHm_v2.0_Chr4g0416061 Rosa chinensis HOM05D006838 ORTHO05D008915 8.4e-26 120.9 97 61.9
FAN17G0416 Fragaria x ananassa HOM05D006838 ORTHO05D001690 1.9e-25 119.8 105 59.0
TPR.G38007 Trifolium pratense HOM05D006838 ORTHO05D008915 1.9e-25 119.8 110 52.7
AagrBONN_evm.TU.Sc2ySwM_362.295 Anthoceros agrestis HOM05D006838 ORTHO05D008915 6.0e-24 114.8 101 47.5
Pp3c10_20820 Physcomitrium patens HOM05D006838 ORTHO05D008915 1.8e-23 113.2 104 50.0
Aqoxy4G00384 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 2.5e-22 109.4 73 65.8
SEGI_21646 Sequoiadendron giganteum HOM05D006838 ORTHO05D008915 2.1e-21 106.3 100 48.0
AagrBONN_evm.TU.Sc2ySwM_362.293 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.7e-21 105.5 101 44.6
Mapoly0185s0021 Marchantia polymorpha HOM05D006838 ORTHO05D008915 1.8e-20 103.2 102 47.1
ATR0697G082 Amborella trichopoda HOM05D006838 ORTHO05D008915 2.4e-20 102.8 101 46.5
Zm00001eb052640 Zea mays HOM05D006838 ORTHO05D008915 6.9e-20 101.3 103 49.5
Os03g0659300 Oryza sativa ssp. japonica HOM05D006838 ORTHO05D008915 2.6e-19 99.4 103 45.6
Potri.008G153602 Populus trichocarpa HOM05D006838 ORTHO05D008915 3.8e-18 95.5 54 77.8
RcHm_v2.0_Chr4g0432191 Rosa chinensis HOM05D006838 ORTHO05D008915 2.7e-16 89.4 50 80.0
SMO304G0126 Selaginella moellendorffii HOM05D006838 ORTHO05D008915 7.9e-16 87.8 100 42.0
FAN12G2595 Fragaria x ananassa HOM05D006838 ORTHO05D046149 6.7e-15 84.7 87 52.9
HPP92_017391 Vanilla planifolia HOM05D006838 ORTHO05D008915 5.3e-12 75.1 68 52.9
FvH4_4g16350 Fragaria vesca HOM05D006838 ORTHO05D046149 9.4e-09 64.3 88 42.0
Sabra10G0056600 Salix brachista HOM05D006838 ORTHO05D008915 2.1e-08 63.2 48 66.7
Actinidia13041 Actinidia chinensis HOM05D006838 ORTHO05D055396 5.1e-07 58.5 31 77.4
Actinidia25664 Actinidia chinensis HOM05D006838 ORTHO05D008915 8.8e-07 57.8 45 60.0
arahy.Tifrunner.gnm1.ann1.9T2EYF Arachis hypogaea HOM05D000986 ORTHO05D000794 3.3e-06 55.8 100 31.0
arahy.Tifrunner.gnm1.ann1.KSBN30 Arachis hypogaea HOM05D000986 ORTHO05D000794 3.3e-06 55.8 100 31.0
Pp3c24_12430 Physcomitrium patens HOM05D006838 ORTHO05D008915 3.3e-06 55.8 88 35.2
AL4G21600 Arabidopsis lyrata HOM05D000986 ORTHO05D000794 5.7e-06 55.1 142 27.5
AT2G28420 Arabidopsis thaliana HOM05D000986 ORTHO05D000794 9.7e-06 54.3 100 31.0


User provided reference genes

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