Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 4.5e-206 721.1 379 100.0
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 8.0e-163 577.4 371 82.5
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 9.8e-161 570.5 330 91.8
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 1.6e-142 510.0 323 83.6
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 6.2e-131 471.5 324 77.5
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 6.9e-130 468.0 324 77.5
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 2.3e-117 426.4 239 91.2
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 7.6e-105 384.8 324 65.4
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 2.7e-102 376.3 324 64.2
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 3.9e-93 345.9 325 58.5
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 5.7e-92 342.0 320 60.0
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 4.5e-89 332.4 325 55.4
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.3e-88 330.9 325 55.1
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 1.3e-88 330.9 325 55.1
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 2.9e-88 329.7 325 55.1
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 3.8e-88 329.3 329 55.6
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 1.9e-87 327.0 326 53.7
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 3.2e-87 326.2 325 54.8
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 3.2e-87 326.2 277 64.6
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 1.2e-86 324.3 326 57.4
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 1.2e-86 324.3 325 55.4
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 2.7e-86 323.2 327 53.8
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 2.7e-86 323.2 325 55.7
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 6.1e-86 322.0 326 54.9
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 8.0e-86 321.6 326 55.2
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 1.8e-85 320.5 369 49.9
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 3.9e-85 319.3 326 55.5
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 5.2e-85 318.9 325 52.9
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 2.6e-84 316.6 326 54.0
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 5.7e-84 315.5 326 54.9
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 9.7e-84 314.7 325 53.5
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 9.7e-84 314.7 325 54.2
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 8.2e-83 311.6 325 53.5
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 1.1e-82 311.2 324 53.7
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 1.8e-82 310.5 344 50.9
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.2e-81 307.8 328 53.7
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 1.2e-81 307.8 327 51.1
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 3.5e-81 306.2 327 52.6
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 1.0e-80 304.7 324 51.5
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 1.7e-80 303.9 327 53.8
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 5.0e-80 302.4 325 53.8
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 6.5e-80 302.0 325 52.3
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 8.5e-80 301.6 350 48.6
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 1.9e-79 300.4 327 52.6
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 3.2e-79 299.7 337 51.6
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 4.2e-79 299.3 303 59.1
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 4.2e-79 299.3 325 55.1
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 1.2e-78 297.7 342 50.0
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 1.2e-78 297.7 331 51.1
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 2.1e-78 297.0 331 52.6
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 4.7e-78 295.8 303 55.4
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 4.7e-78 295.8 324 50.0
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 4.7e-78 295.8 324 50.0
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 6.1e-78 295.4 325 50.8
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 1.0e-77 294.7 331 50.8
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 3.3e-76 289.7 315 50.8
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 4.4e-76 289.3 266 57.5
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 6.3e-75 285.4 360 46.4
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 6.3e-75 285.4 332 48.8
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 1.4e-74 284.3 231 60.6
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 2.4e-74 283.5 257 57.2
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 3.1e-74 283.1 328 48.8
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 9.1e-74 281.6 255 57.3
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 1.2e-73 281.2 327 48.6
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 1.2e-73 281.2 327 48.6
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 1.2e-73 281.2 303 50.5
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 1.2e-73 281.2 292 52.4
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 1.6e-73 280.8 239 60.7
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 3.5e-73 279.6 317 48.6
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 4.5e-73 279.3 327 48.3
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 4.5e-73 279.3 248 59.3
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 7.7e-73 278.5 327 48.3
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 3.8e-72 276.2 320 48.4
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 3.8e-72 276.2 218 63.8
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 6.5e-72 275.4 228 62.7
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 8.5e-72 275.0 311 50.5
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 1.9e-71 273.9 261 55.9
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 4.2e-71 272.7 305 50.8
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 5.5e-71 272.3 260 55.8
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 9.4e-71 271.6 235 60.0
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 9.4e-71 271.6 248 57.3
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 1.2e-70 271.2 234 58.1
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 1.6e-70 270.8 326 47.9
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 1.4e-69 267.7 220 62.7
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 3.0e-69 266.5 231 59.7
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 4.0e-69 266.2 248 56.0
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 8.8e-69 265.0 305 49.2
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 2.2e-67 260.4 329 46.5
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 3.7e-67 259.6 303 49.2
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 6.3e-67 258.8 296 49.0
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 8.3e-67 258.5 229 59.0
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 5.9e-65 252.3 225 59.1
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 1.3e-64 251.1 316 47.5
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 1.7e-64 250.8 222 58.6
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.1e-63 248.1 210 62.9
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.1e-62 243.8 336 47.6
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 2.8e-59 233.4 241 53.9
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 3.7e-59 233.0 245 51.8
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 7.0e-58 228.8 252 49.2
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 5.9e-57 225.7 227 52.4
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.3e-56 224.6 251 51.0
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.3e-56 224.6 251 51.0
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 1.7e-56 224.2 231 51.1
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 1.7e-56 224.2 227 52.4
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 3.8e-56 223.0 276 46.4
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 1.5e-55 221.1 225 52.0
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 3.3e-55 219.9 258 48.1
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 1.6e-54 217.6 330 43.3
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 2.8e-54 216.9 249 48.6
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 5.8e-52 209.1 182 58.8
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 1.7e-51 207.6 258 47.3
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 3.7e-51 206.5 305 43.3
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 3.2e-50 203.4 225 47.6
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 4.1e-50 203.0 254 48.0
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 7.0e-50 202.2 248 46.4
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 1.5e-44 184.5 147 61.9
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.0e-44 184.1 208 49.5
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 4.4e-44 183.0 301 40.5
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 1.9e-42 177.6 154 61.0
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 3.2e-42 176.8 234 44.4
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 4.6e-41 172.9 195 50.3
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 5.1e-40 169.5 136 61.8
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 8.6e-40 168.7 154 59.1
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 6.2e-38 162.5 139 59.7
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 3.1e-37 160.2 147 59.9
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 5.8e-36 156.0 233 42.1
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 1.3e-35 154.8 221 43.4
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 2.7e-33 147.1 200 45.0
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 3.9e-32 143.3 132 56.1
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 1.5e-31 141.4 162 49.4
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 7.3e-31 139.0 222 38.3
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 2.1e-30 137.5 172 45.9
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 4.0e-29 133.3 140 53.6
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 2.0e-28 131.0 103 64.1
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.3e-27 128.3 104 62.5
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 8.4e-27 125.6 154 46.1
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.3e-24 117.5 114 57.0
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 4.0e-21 106.7 256 30.5
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 2.0e-20 104.4 64 73.4
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 1.5e-15 88.2 187 31.6
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 9.0e-13 79.0 199 31.7
Aqoxy6G02632 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 1.3e-11 75.1 58 62.1
Ca_15863_v3 Cicer arietinum L. HOM05D000681 ORTHO05D011778 8.7e-08 62.4 50 62.0


User provided reference genes

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