Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G0469 Fragaria x ananassa HOM05D000003 ORTHO05D020649 5.3e-127 457.6 216 100.0
RcHm_v2.0_Chr5g0053531 Rosa chinensis HOM05D000003 ORTHO05D000004 1.7e-56 223.4 251 45.4
FvH4_6g46881 Fragaria vesca HOM05D000003 ORTHO05D000022 3.6e-43 179.1 230 42.6
RcHm_v2.0_Chr1g0351011 Rosa chinensis HOM05D000003 ORTHO05D000004 6.6e-37 158.3 251 35.1
FAN16G2819 Fragaria x ananassa HOM05D000003 ORTHO05D000022 1.2e-33 147.5 188 43.6
FvH4_3g30492 Fragaria vesca HOM05D000003 ORTHO05D000022 4.5e-33 145.6 251 35.1
RcHm_v2.0_Chr4g0406871 Rosa chinensis HOM05D000003 ORTHO05D000004 4.2e-31 139.0 250 32.4
RcHm_v2.0_Chr2g0144631 Rosa chinensis HOM05D000003 ORTHO05D000022 4.6e-30 135.6 251 33.5
RcHm_v2.0_Chr2g0146161 Rosa chinensis HOM05D000003 ORTHO05D000022 7.9e-30 134.8 203 36.9
Prupe.6G201000 Prunus persica HOM05D000003 ORTHO05D000022 8.7e-29 131.3 252 30.2
Prupe.6G118100 Prunus persica HOM05D000003 ORTHO05D000022 1.5e-28 130.6 252 30.2
Prupe.4G161900 Prunus persica HOM05D000003 ORTHO05D000022 3.3e-28 129.4 252 30.2
Atru.chr1.2620 Acer truncatum HOM05D000003 ORTHO05D000004 4.3e-28 129.0 252 31.3
RcHm_v2.0_Chr5g0018821 Rosa chinensis HOM05D000003 ORTHO05D000022 9.6e-28 127.9 251 30.7
FvH4_3g27901 Fragaria vesca HOM05D000003 ORTHO05D000022 2.1e-27 126.7 254 33.5
RcHm_v2.0_Chr2g0132921 Rosa chinensis HOM05D000003 ORTHO05D000022 2.8e-27 126.3 171 36.8
Atru.chr10.857 Acer truncatum HOM05D000003 ORTHO05D000004 3.4e-25 119.4 252 29.4
Prupe.5G085900 Prunus persica HOM05D000003 ORTHO05D000022 1.3e-24 117.5 244 29.1
Atru.chr7.668 Acer truncatum HOM05D000003 ORTHO05D000004 4.9e-24 115.5 252 29.4
Atru.chr6.1170 Acer truncatum HOM05D000003 ORTHO05D000022 1.4e-23 114.0 249 30.9
Atru.chr4.29 Acer truncatum HOM05D000003 ORTHO05D000022 3.2e-23 112.8 252 29.8
FvH4_6g25500 Fragaria vesca HOM05D000003 ORTHO05D000007 4.2e-23 112.5 119 46.2
Atru.chr2.669 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-22 110.9 249 28.1
RcHm_v2.0_Chr6g0262791 Rosa chinensis HOM05D000003 ORTHO05D000022 6.0e-22 108.6 206 28.2
Atru.chr6.1397 Acer truncatum HOM05D000003 ORTHO05D000022 7.9e-22 108.2 252 31.0
FvH4_3g33091 Fragaria vesca HOM05D000003 ORTHO05D000022 1.0e-21 107.8 235 30.6
Atru.chr1.1302 Acer truncatum HOM05D000003 ORTHO05D000004 3.0e-21 106.3 262 27.1
Atru.chr3.2393 Acer truncatum HOM05D000003 ORTHO05D000022 3.9e-21 105.9 256 27.0
Atru.chr1.776 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-20 104.4 251 29.9
Atru.chr1.1484 Acer truncatum HOM05D000003 ORTHO05D000022 5.6e-20 102.1 251 28.3
Atru.chr1.956 Acer truncatum HOM05D000003 ORTHO05D000006 5.6e-20 102.1 230 29.1
Atru.chr10.81 Acer truncatum HOM05D000003 ORTHO05D000004 7.4e-20 101.7 251 28.7
Atru.chr9.1513 Acer truncatum HOM05D000003 ORTHO05D000022 2.1e-19 100.1 182 31.3
FvH4_5g27995 Fragaria vesca HOM05D000003 ORTHO05D000022 2.8e-19 99.8 171 35.7
RcHm_v2.0_Chr3g0486471 Rosa chinensis HOM05D000003 ORTHO05D000022 3.7e-19 99.4 82 58.5
Atru.chr13.1101 Acer truncatum HOM05D000003 ORTHO05D000022 6.2e-19 98.6 249 30.1
Atru.chr7.622 Acer truncatum HOM05D000003 ORTHO05D000004 1.4e-18 97.4 203 28.6
FAN18G4442 Fragaria x ananassa HOM05D000003 ORTHO05D020649 4.0e-18 95.9 156 37.2
Atru.chr1.1336 Acer truncatum HOM05D000003 ORTHO05D000022 6.9e-18 95.1 252 28.6
Atru.chr4.661 Acer truncatum HOM05D000003 ORTHO05D000022 6.9e-18 95.1 225 29.3
Atru.chr2.1419 Acer truncatum HOM05D000003 ORTHO05D000022 9.0e-18 94.7 252 27.8
Atru.chr2.2708 Acer truncatum HOM05D000003 ORTHO05D000022 2.6e-17 93.2 252 27.4
Atru.chr1.3365 Acer truncatum HOM05D000003 ORTHO05D000004 4.5e-17 92.4 252 27.4
Atru.chr7.120 Acer truncatum HOM05D000003 ORTHO05D000004 4.5e-17 92.4 231 29.9
RcHm_v2.0_Chr6g0291741 Rosa chinensis HOM05D000003 ORTHO05D000004 4.5e-17 92.4 238 28.6
FvH4_2g12061 Fragaria vesca HOM05D000003 ORTHO05D000022 5.8e-17 92.0 83 53.0
RcHm_v2.0_Chr7g0200931 Rosa chinensis HOM05D000003 ORTHO05D000022 5.8e-17 92.0 142 34.5
Atru.chr1.1905 Acer truncatum HOM05D000003 ORTHO05D000022 1.0e-16 91.3 260 26.2
TWI81G0242 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.0e-16 91.3 264 26.5
Atru.chr3.2067 Acer truncatum HOM05D000003 ORTHO05D000022 1.7e-16 90.5 251 26.3
COL.COLO4_07368 Corchorus olitorius HOM05D000003 ORTHO05D000022 2.9e-16 89.7 231 27.3
FvH4_1g29782 Fragaria vesca HOM05D000003 ORTHO05D000022 4.9e-16 89.0 221 30.3
Atru.chr4.1146 Acer truncatum HOM05D000003 ORTHO05D000022 2.5e-15 86.7 244 27.9
Atru.chr7.949 Acer truncatum HOM05D000003 ORTHO05D000022 2.5e-15 86.7 230 27.0
Atru.chr2.971 Acer truncatum HOM05D000003 ORTHO05D000022 3.2e-15 86.3 230 28.3
Manes.06G020101 Manihot esculenta HOM05D000003 ORTHO05D000004 3.2e-15 86.3 255 27.1
Atru.chr7.713 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-14 84.3 251 28.3
Atru.chr3.3019 Acer truncatum HOM05D000003 ORTHO05D000022 1.6e-14 84.0 258 23.6
Atru.chr10.713 Acer truncatum HOM05D000003 ORTHO05D000022 4.6e-14 82.4 261 25.3
FvH4_1g24182 Fragaria vesca HOM05D000003 ORTHO05D000004 4.6e-14 82.4 229 27.1
Atru.chr3.1505 Acer truncatum HOM05D000003 ORTHO05D000022 6.0e-14 82.0 195 24.6
RcHm_v2.0_Chr2g0125461 Rosa chinensis HOM05D000003 ORTHO05D000022 7.9e-14 81.6 146 32.9
Atru.chr12.2484 Acer truncatum HOM05D000003 ORTHO05D000022 1.3e-13 80.9 242 26.0
Atru.chr12.1755 Acer truncatum HOM05D000003 ORTHO05D000022 2.3e-13 80.1 206 27.7
Atru.chr6.2848 Acer truncatum HOM05D000003 ORTHO05D000022 3.0e-13 79.7 228 27.2
Atru.chr11.1308 Acer truncatum HOM05D000003 ORTHO05D000022 6.7e-13 78.6 252 27.8
Atru.chr4.1844 Acer truncatum HOM05D000003 ORTHO05D000022 8.7e-13 78.2 169 28.4
Atru.chr10.890 Acer truncatum HOM05D000003 ORTHO05D000022 1.5e-12 77.4 236 24.6
Atru.chr5.2238 Acer truncatum HOM05D000003 ORTHO05D000004 1.5e-12 77.4 234 26.1
RcHm_v2.0_Chr5g0074971 Rosa chinensis HOM05D000003 ORTHO05D000022 1.5e-12 77.4 141 34.0
CSS0041590 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.5e-12 76.6 250 26.0
PGR119G2417 Punica granatum HOM05D000003 ORTHO05D000004 2.5e-12 76.6 199 24.6
RcHm_v2.0_Chr1g0321741 Rosa chinensis HOM05D000003 ORTHO05D012910 5.7e-12 75.5 110 33.6
Atru.chr10.394 Acer truncatum HOM05D000003 ORTHO05D000022 2.1e-11 73.6 182 25.3
FvH4_1g25671 Fragaria vesca HOM05D000003 ORTHO05D000022 2.1e-11 73.6 74 45.9
RcHm_v2.0_Chr7g0220091 Rosa chinensis HOM05D000003 ORTHO05D000022 2.8e-11 73.2 78 42.3
Prupe.1G291700 Prunus persica HOM05D000061 ORTHO05D000050 3.7e-11 72.8 187 27.8
CSS0038564 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 6.3e-11 72.0 208 25.0
Prupe.6G123500 Prunus persica HOM05D000003 ORTHO05D000022 6.3e-11 72.0 245 26.5
FvH4_2g14202 Fragaria vesca HOM05D000003 ORTHO05D000022 1.1e-10 71.2 56 57.1
RcHm_v2.0_Chr3g0484381 Rosa chinensis HOM05D000003 ORTHO05D000022 1.1e-10 71.2 152 28.9
FvH4_6g25491 Fragaria vesca HOM05D000003 ORTHO05D000022 1.4e-10 70.9 56 60.7
Atru.chr13.1905 Acer truncatum HOM05D000003 ORTHO05D000004 3.1e-10 69.7 222 25.7
RcHm_v2.0_Chr2g0128961 Rosa chinensis HOM05D000003 ORTHO05D000022 4.1e-10 69.3 62 50.0
RcHm_v2.0_Chr2g0127141 Rosa chinensis HOM05D000003 ORTHO05D000022 5.3e-10 68.9 75 45.3
FvH4_2g12671 Fragaria vesca HOM05D000003 ORTHO05D000022 6.9e-10 68.6 79 43.0
Atru.chr4.1178 Acer truncatum HOM05D000003 ORTHO05D000022 9.0e-10 68.2 155 27.1
Manes.07G103102 Manihot esculenta HOM05D000003 ORTHO05D000004 9.0e-10 68.2 258 21.7
FvH4_6g18164 Fragaria vesca HOM05D000003 ORTHO05D000022 1.5e-09 67.4 83 41.0
Atru.chr8.1687 Acer truncatum HOM05D000003 ORTHO05D000022 2.0e-09 67.0 83 37.3
FvH4_5g34262 Fragaria vesca HOM05D000003 ORTHO05D000022 2.0e-09 67.0 56 55.4
FAN05G1276 Fragaria x ananassa HOM05D000003 ORTHO05D020649 3.4e-09 66.2 65 49.2
Atru.chr2.451 Acer truncatum HOM05D000003 ORTHO05D000004 4.5e-09 65.9 112 34.8
FvH4_2g06731 Fragaria vesca HOM05D000003 ORTHO05D020649 4.5e-09 65.9 87 41.4
FAN05G5257 Fragaria x ananassa HOM05D000003 ORTHO05D020649 4.5e-09 65.9 68 50.0
FvH4_2g09413 Fragaria vesca HOM05D000003 ORTHO05D000022 5.9e-09 65.5 51 62.7
Gorai.003G055100 Gossypium raimondii HOM05D016941 ORTHO05D019244 5.9e-09 65.5 219 28.8
Psat7g156400 Pisum sativum HOM05D000003 ORTHO05D017882 7.6e-09 65.1 180 26.1
FvH4_6g27023 Fragaria vesca HOM05D000003 ORTHO05D020649 1.3e-08 64.3 62 53.2
SGA_v2.0_scaffold147G36377 Striga asiatica HOM05D000003 ORTHO05D000022 1.3e-08 64.3 193 22.8
RcHm_v2.0_Chr1g0382551 Rosa chinensis HOM05D000003 ORTHO05D000004 2.2e-08 63.5 97 38.1
Atru.chr12.1675 Acer truncatum HOM05D000003 ORTHO05D000022 2.9e-08 63.2 189 21.7
Nn1g09365 Nelumbo nucifera HOM05D000003 ORTHO05D000004 2.9e-08 63.2 240 24.6
Atru.chr12.385 Acer truncatum HOM05D000003 ORTHO05D000022 3.8e-08 62.8 85 37.6
FAN18G1486 Fragaria x ananassa HOM05D000003 ORTHO05D000022 3.8e-08 62.8 78 35.9
Atru.chr6.1037 Acer truncatum HOM05D000003 ORTHO05D000022 5.0e-08 62.4 85 32.9
RcHm_v2.0_Chr1g0384551 Rosa chinensis HOM05D000003 ORTHO05D000004 5.0e-08 62.4 87 39.1
Atru.chr8.829 Acer truncatum HOM05D000003 ORTHO05D000022 8.5e-08 61.6 85 34.1
FvH4_2g12003 Fragaria vesca HOM05D000003 ORTHO05D000004 8.5e-08 61.6 123 31.7
Atru.chr12.663 Acer truncatum HOM05D000003 ORTHO05D000022 1.1e-07 61.2 84 35.7
QL02p092030 Quercus lobata HOM05D000003 ORTHO05D000022 1.1e-07 61.2 253 24.9
Atru.chr2.53 Acer truncatum HOM05D000003 ORTHO05D000022 1.4e-07 60.8 85 29.4
Atru.chr10.557 Acer truncatum HOM05D000003 ORTHO05D000022 1.9e-07 60.5 60 45.0
PSO063G3543 Papaver somniferum HOM05D000003 ORTHO05D000004 1.9e-07 60.5 216 26.4
Atru.chr1.1701 Acer truncatum HOM05D000003 ORTHO05D000022 2.5e-07 60.1 83 32.5
Atru.chr8.1561 Acer truncatum HOM05D000003 ORTHO05D000022 2.5e-07 60.1 81 35.8
RcHm_v2.0_Chr4g0411801 Rosa chinensis HOM05D000003 ORTHO05D000022 2.5e-07 60.1 128 27.3
Atru.chr2.1761 Acer truncatum HOM05D000003 ORTHO05D000004 3.2e-07 59.7 99 35.4
FvH4_1g25610 Fragaria vesca HOM05D000003 ORTHO05D000004 3.2e-07 59.7 149 29.5
PGR031G0166 Punica granatum HOM05D000155 ORTHO05D000022 3.2e-07 59.7 209 23.9
PSO782G5323 Papaver somniferum HOM05D000003 ORTHO05D001026 5.5e-07 58.9 234 23.5
Atru.chr10.897 Acer truncatum HOM05D000003 ORTHO05D000004 7.2e-07 58.5 85 29.4
FvH4_6g10681 Fragaria vesca HOM05D000003 ORTHO05D000004 7.2e-07 58.5 81 40.7
LjContig00357g0004525 Lotus japonicus HOM05D000003 ORTHO05D000022 7.2e-07 58.5 94 29.8
AUR62022035 Chenopodium quinoa HOM05D000022 ORTHO05D013985 9.3e-07 58.2 94 34.0
AUR62044423 Chenopodium quinoa HOM05D000022 ORTHO05D013985 9.3e-07 58.2 94 34.0
PSO339G5115 Papaver somniferum HOM05D000003 ORTHO05D000004 1.2e-06 57.8 211 23.7
RcHm_v2.0_Chr4g0426941 Rosa chinensis HOM05D000003 ORTHO05D000022 1.2e-06 57.8 122 31.1
vmacro01820 Vaccinium macrocarpon HOM05D001647 ORTHO05D001191 1.2e-06 57.8 209 23.0
Lj4g0003656 Lotus japonicus HOM05D000003 ORTHO05D000007 1.6e-06 57.4 130 30.8
Nn8g41081 Nelumbo nucifera HOM05D000003 ORTHO05D000004 1.6e-06 57.4 218 23.9
PSO675G2188 Papaver somniferum HOM05D000003 ORTHO05D000004 1.6e-06 57.4 128 28.9
RcHm_v2.0_Chr1g0334981 Rosa chinensis HOM05D000003 ORTHO05D000022 1.6e-06 57.4 59 44.1
SGA_v2.0_scaffold153G36924 Striga asiatica HOM05D010740 ORTHO05D000022 1.6e-06 57.4 161 25.5
RcHm_v2.0_Chr3g0484471 Rosa chinensis HOM05D000003 ORTHO05D000022 2.1e-06 57.0 60 46.7
Atru.chr11.1190 Acer truncatum HOM05D000003 ORTHO05D000022 2.7e-06 56.6 59 42.4
Atru.chr2.284 Acer truncatum HOM05D000003 ORTHO05D000022 2.7e-06 56.6 168 25.6
AUR62034895 Chenopodium quinoa HOM05D000003 ORTHO05D000022 2.7e-06 56.6 183 24.0
FvH4_3g20371 Fragaria vesca HOM05D000003 ORTHO05D000004 3.6e-06 56.2 189 27.0
Psat1g083000 Pisum sativum HOM05D000003 ORTHO05D015733 3.6e-06 56.2 253 22.9
RcHm_v2.0_Chr4g0437331 Rosa chinensis HOM05D000003 ORTHO05D000022 3.6e-06 56.2 59 44.1
RcHm_v2.0_Chr6g0266871 Rosa chinensis HOM05D000003 ORTHO05D000022 3.6e-06 56.2 53 52.8
Atru.chr1.1754 Acer truncatum HOM05D000003 ORTHO05D000022 4.6e-06 55.8 87 32.2
Atru.chr6.1028 Acer truncatum HOM05D000003 ORTHO05D000004 4.6e-06 55.8 137 32.8
Atru.chr9.658 Acer truncatum HOM05D000003 ORTHO05D000022 4.6e-06 55.8 60 41.7
COL.COLO4_21884 Corchorus olitorius HOM05D000003 ORTHO05D000004 4.6e-06 55.8 116 26.7
Zm00001eb279530 Zea mays HOM05D000003 ORTHO05D000004 4.6e-06 55.8 114 28.9
Atru.chr12.1989 Acer truncatum HOM05D000003 ORTHO05D000022 6.1e-06 55.5 82 34.1
Atru.chr6.2380 Acer truncatum HOM05D000003 ORTHO05D000022 6.1e-06 55.5 73 34.2
Manes.04G057464 Manihot esculenta HOM05D000003 ORTHO05D000022 6.1e-06 55.5 79 31.6
RcHm_v2.0_Chr1g0322281 Rosa chinensis HOM05D000003 ORTHO05D000022 6.1e-06 55.5 42 64.3
CARHR098760 Cardamine hirsuta HOM05D000003 ORTHO05D000022 7.9e-06 55.1 181 21.5
CARHR124520 Cardamine hirsuta HOM05D000003 ORTHO05D000022 7.9e-06 55.1 188 23.4
Lj6g0022193 Lotus japonicus HOM05D010643 ORTHO05D013332 7.9e-06 55.1 92 34.8
RcHm_v2.0_Chr5g0040021 Rosa chinensis HOM05D000003 ORTHO05D000022 7.9e-06 55.1 60 43.3


User provided reference genes

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