Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G0467 Fragaria x ananassa HOM05D006482 ORTHO05D008149 4.2e-59 231.1 113 100.0
FvH4_4g29090 Fragaria vesca HOM05D000768 ORTHO05D046510 2.3e-28 129.0 90 80.0
FAN22G1213 Fragaria x ananassa HOM05D034724 ORTHO05D202753 4.9e-15 84.7 97 54.6
FvH4_7g32700 Fragaria vesca HOM05D006482 ORTHO05D008149 6.4e-15 84.3 87 57.5
FAN01G3112 Fragaria x ananassa HOM05D006482 ORTHO05D008149 6.4e-15 84.3 87 57.5
FAN03G2872 Fragaria x ananassa HOM05D006482 ORTHO05D008149 6.4e-15 84.3 87 57.5
Prupe.2G317400 Prunus persica HOM05D006482 ORTHO05D008149 9.2e-14 80.5 87 55.2
MD07G1297700 Malus domestica HOM05D006482 ORTHO05D008149 1.3e-12 76.6 41 90.2
RcHm_v2.0_Chr1g0382671 Rosa chinensis HOM05D006482 ORTHO05D008149 1.3e-12 76.6 87 54.0
MD01G1227400 Malus domestica HOM05D006482 ORTHO05D008149 2.3e-12 75.9 41 87.8
PGR142G0199 Punica granatum HOM05D006482 ORTHO05D008149 2.3e-12 75.9 43 79.1
Haze_00279 Corylus avellana HOM05D006482 ORTHO05D008149 5.0e-12 74.7 46 80.4
CANSAT21G0227 Cannabis sativa HOM05D006482 ORTHO05D008149 8.6e-12 73.9 43 81.4
Eucgr.K00422 Eucalyptus grandis HOM05D006482 ORTHO05D008149 8.6e-12 73.9 43 79.1
QL05p036199 Quercus lobata HOM05D006482 ORTHO05D008149 1.9e-11 72.8 41 85.4
QL09p007382 Quercus lobata HOM05D006482 ORTHO05D008149 1.9e-11 72.8 41 85.4
C03p17520 Brassica napus HOM05D006482 ORTHO05D008149 4.3e-11 71.6 54 66.7
BolC3t14165H Brassica oleracea HOM05D006482 ORTHO05D008149 4.3e-11 71.6 54 66.7
GSVIVG01038627001 Vitis vinifera HOM05D006482 ORTHO05D008149 4.3e-11 71.6 43 79.1
Atru.chr12.2369 Acer truncatum HOM05D006482 ORTHO05D008149 5.6e-11 71.2 43 76.7
BcaC01g06263 Brassica carinata HOM05D006482 ORTHO05D008149 7.3e-11 70.9 54 66.7
A02p10930 Brassica napus HOM05D006482 ORTHO05D008149 1.2e-10 70.1 54 66.7
BraA02t06158Z Brassica rapa HOM05D006482 ORTHO05D008149 1.2e-10 70.1 54 66.7
TAR374G1512 Trochodendron aralioides HOM05D006482 ORTHO05D008149 1.2e-10 70.1 43 79.1
Aa31LG3G9780 Aethionema arabicum HOM05D006482 ORTHO05D008149 1.6e-10 69.7 54 68.5
AL8G28600 Arabidopsis lyrata HOM05D006482 ORTHO05D008149 1.6e-10 69.7 54 68.5
Carub.0008s1398 Capsella rubella HOM05D006482 ORTHO05D008149 1.6e-10 69.7 54 68.5
Ciclev10023193m.g Citrus clementina HOM05D006482 ORTHO05D008149 1.6e-10 69.7 41 82.9
Thhalv10015198m.g Eutrema salsugineum HOM05D006482 ORTHO05D008149 1.6e-10 69.7 54 68.5
Sp6g15770 Schrenkiella parvula HOM05D006482 ORTHO05D008149 1.6e-10 69.7 54 68.5
BcaC03g14399 Brassica carinata HOM05D006482 ORTHO05D008149 2.1e-10 69.3 51 68.6
C02p18140 Brassica napus HOM05D006482 ORTHO05D008149 2.1e-10 69.3 51 68.6
BolC2t07944H Brassica oleracea HOM05D006482 ORTHO05D008149 2.1e-10 69.3 51 68.6
CARHR266810 Cardamine hirsuta HOM05D006482 ORTHO05D008149 2.1e-10 69.3 54 66.7
BcaB05g22064 Brassica carinata HOM05D006482 ORTHO05D008149 2.8e-10 68.9 54 64.8
A03p15030 Brassica napus HOM05D006482 ORTHO05D008149 2.8e-10 68.9 54 66.7
BraA03t10797Z Brassica rapa HOM05D006482 ORTHO05D008149 2.8e-10 68.9 54 66.7
COL.COLO4_14353 Corchorus olitorius HOM05D006482 ORTHO05D008149 2.8e-10 68.9 43 76.7
CSS0007382 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 3.6e-10 68.6 46 69.6
CiPaw.05G203100 Carya illinoinensis HOM05D006482 ORTHO05D008149 3.6e-10 68.6 41 82.9
Dinv18742 Davidia involucrata HOM05D006482 ORTHO05D008149 3.6e-10 68.6 41 78.0
AT5G53650 Arabidopsis thaliana HOM05D006482 ORTHO05D008149 4.7e-10 68.2 54 66.7
arahy.Tifrunner.gnm1.ann1.CVH3M3 Arachis hypogaea HOM05D006482 ORTHO05D008149 4.7e-10 68.2 43 69.8
arahy.Tifrunner.gnm1.ann1.ZIU4UI Arachis hypogaea HOM05D006482 ORTHO05D008149 4.7e-10 68.2 43 69.8
Gohir.A08G103900 Gossypium hirsutum HOM05D006482 ORTHO05D008149 4.7e-10 68.2 41 80.5
Gorai.008G265700 Gossypium raimondii HOM05D006482 ORTHO05D008149 4.7e-10 68.2 41 80.5
CSS0017170 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 6.2e-10 67.8 43 72.1
Duzib068G1219 Durio zibethinus HOM05D006482 ORTHO05D008149 6.2e-10 67.8 93 46.2
Gohir.A12G246900 Gossypium hirsutum HOM05D006482 ORTHO05D008149 6.2e-10 67.8 43 74.4
Thecc.03G206900 Theobroma cacao HOM05D006482 ORTHO05D008149 6.2e-10 67.8 41 78.0
BcaB01g04252 Brassica carinata HOM05D006482 ORTHO05D008149 8.1e-10 67.4 54 64.8
Dinv29224 Davidia involucrata HOM05D006482 ORTHO05D008149 8.1e-10 67.4 43 72.1
THA.LOC109117152 Tarenaya hassleriana HOM05D006482 ORTHO05D008149 8.1e-10 67.4 54 68.5
CSS0018303 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 1.1e-09 67.0 43 72.1
Phvul.009G047100 Phaseolus vulgaris HOM05D006482 ORTHO05D008149 1.1e-09 67.0 41 78.0
TWI39G0373 Tripterygium wilfordii HOM05D006482 ORTHO05D008149 1.1e-09 67.0 43 74.4
Duzib205G0332 Durio zibethinus HOM05D006482 ORTHO05D008149 1.4e-09 66.6 41 78.0
Glyma.04G230700 Glycine max HOM05D006482 ORTHO05D008149 1.4e-09 66.6 41 75.6
Gohir.D08G115300 Gossypium hirsutum HOM05D006482 ORTHO05D008149 1.4e-09 66.6 41 78.0
Gorai.004G124200 Gossypium raimondii HOM05D006482 ORTHO05D008149 1.4e-09 66.6 41 78.0
Potri.012G022900 Populus trichocarpa HOM05D006482 ORTHO05D008149 1.4e-09 66.6 41 78.0
Potri.015G006500 Populus trichocarpa HOM05D006482 ORTHO05D008149 1.4e-09 66.6 41 78.0
Sed0025475 Sechium edule HOM05D006482 ORTHO05D008149 1.4e-09 66.6 54 64.8
TPR.G14847 Trifolium pratense HOM05D006482 ORTHO05D008149 1.4e-09 66.6 42 73.8
CDE09G1364 Ceratophyllum demersum HOM05D001294 ORTHO05D001178 1.8e-09 66.2 54 64.8
Nn3g18841 Nelumbo nucifera HOM05D006482 ORTHO05D008149 1.8e-09 66.2 41 80.5
CsaV3_5G000030 Cucumis sativus L. HOM05D006482 ORTHO05D008149 2.3e-09 65.9 54 63.0
PSO063G1999 Papaver somniferum HOM05D006482 ORTHO05D008149 2.3e-09 65.9 41 82.9
Psat5g073480 Pisum sativum HOM05D006482 ORTHO05D008149 2.3e-09 65.9 42 73.8
Sabra12G0010900 Salix brachista HOM05D006482 ORTHO05D008149 2.3e-09 65.9 41 78.0
AUR62035606 Chenopodium quinoa HOM05D006482 ORTHO05D008149 3.1e-09 65.5 42 78.6
Medtr3g092270 Medicago truncatula HOM05D006482 ORTHO05D008149 3.1e-09 65.5 54 64.8
Hund21041 Selenicereus undatus HOM05D006482 ORTHO05D008149 3.1e-09 65.5 54 64.8
Sopen08g031390 Solanum pennellii HOM05D006482 ORTHO05D008149 3.1e-09 65.5 52 63.5
CSS0015195 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 4.0e-09 65.1 46 65.2
MELO3C005924.2 Cucumis melo HOM05D006482 ORTHO05D008149 4.0e-09 65.1 54 61.1
Manes.01G041500 Manihot esculenta HOM05D006482 ORTHO05D008149 4.0e-09 65.1 41 73.2
Solyc08g083200.3 Solanum lycopersicum HOM05D006482 ORTHO05D008149 4.0e-09 65.1 52 63.5
Ah.13g070630 Amaranthus hybridus HOM05D006482 ORTHO05D008149 5.2e-09 64.7 54 66.7
Lj1g0026941 Lotus japonicus HOM05D006482 ORTHO05D008149 5.2e-09 64.7 41 75.6
CDE11G0870 Ceratophyllum demersum HOM05D006482 ORTHO05D008149 6.8e-09 64.3 38 78.9
DCAR_006554 Daucus carota HOM05D006482 ORTHO05D008149 6.8e-09 64.3 41 75.6
Hma1.2p1_0456F.1_g156710 Hydrangea macrophylla HOM05D006482 ORTHO05D008149 6.8e-09 64.3 41 80.5
Nitab4.5_0008141g0050 Nicotiana tabacum HOM05D006482 ORTHO05D008149 6.8e-09 64.3 52 61.5
EL10Ac3g05199 Beta vulgaris HOM05D006482 ORTHO05D008149 8.9e-09 63.9 54 64.8
AUR62006020 Chenopodium quinoa HOM05D006482 ORTHO05D008149 8.9e-09 63.9 41 78.0
ECA233G2670 Erigeron canadensis HOM05D006482 ORTHO05D008149 8.9e-09 63.9 41 73.2
Lalb_Chr11g0067291 Lupinus albus HOM05D006482 ORTHO05D008149 8.9e-09 63.9 43 69.8
Sabra15G0004500 Salix brachista HOM05D006482 ORTHO05D008149 8.9e-09 63.9 41 75.6
vmacro13845 Vaccinium macrocarpon HOM05D006482 ORTHO05D008149 8.9e-09 63.9 41 75.6
Rhsim07G0077300 Rhododendron simsii HOM05D006482 ORTHO05D008149 1.2e-08 63.5 41 75.6
Nitab4.5_0002720g0020 Nicotiana tabacum HOM05D006482 ORTHO05D008149 1.5e-08 63.2 52 59.6
Sc19g0000660 Simmondsia chinensis HOM05D006482 ORTHO05D008149 1.5e-08 63.2 54 63.0
TAR629G1047 Trochodendron aralioides HOM05D006482 ORTHO05D008149 1.5e-08 63.2 43 72.1
Rhsim03G0214200 Rhododendron simsii HOM05D006482 ORTHO05D008149 2.0e-08 62.8 43 65.1
Oeu010737.1 Olea europaea HOM05D006482 ORTHO05D008149 2.6e-08 62.4 53 60.4
CiPaw.06G042200 Carya illinoinensis HOM05D006482 ORTHO05D008149 3.4e-08 62.0 41 70.7
Migut.E00300 Erythranthe guttata HOM05D006482 ORTHO05D008149 3.4e-08 62.0 50 70.0
Lsat_1_v5_gn_6_10060 Lactuca sativa HOM05D006482 ORTHO05D008149 3.4e-08 62.0 41 73.2
TWI14G0741 Tripterygium wilfordii HOM05D006482 ORTHO05D008149 3.4e-08 62.0 43 65.1
Actinidia27284 Actinidia chinensis HOM05D000567 ORTHO05D000767 4.4e-08 61.6 41 70.7
Hund09702 Selenicereus undatus HOM05D006482 ORTHO05D008149 5.8e-08 61.2 54 63.0
ATR0579G147 Amborella trichopoda HOM05D006482 ORTHO05D008149 7.5e-08 60.8 41 68.3
Lalb_Chr23g0271851 Lupinus albus HOM05D006482 ORTHO05D008149 7.5e-08 60.8 41 70.7
PGSC0003DMG400012236 Solanum tuberosum HOM05D006482 ORTHO05D008149 7.5e-08 60.8 52 59.6
SalBow3G2365 Salvia bowleyana HOM05D006482 ORTHO05D008149 9.9e-08 60.5 41 73.2
vmacro06428 Vaccinium macrocarpon HOM05D006482 ORTHO05D008149 9.9e-08 60.5 43 65.1
HanXRQChr07g0192381 Helianthus annuus HOM05D006482 ORTHO05D008149 1.3e-07 60.1 41 70.7
ClCG01G000130 Citrullus lanatus HOM05D006482 ORTHO05D008149 2.2e-07 59.3 41 65.9
Duzib084G1447 Durio zibethinus HOM05D006482 ORTHO05D008149 2.9e-07 58.9 41 73.2
Gohir.D12G247600 Gossypium hirsutum HOM05D006482 ORTHO05D008149 6.4e-07 57.8 33 84.8
CSS0001288 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 8.3e-07 57.4 41 65.9
Sed0001965 Sechium edule HOM05D006482 ORTHO05D008149 8.3e-07 57.4 41 63.4
Cc08_g16820 Coffea canephora HOM05D006482 ORTHO05D008149 1.1e-06 57.0 42 69.0
Glyma.04G154600 Glycine max HOM05D006482 ORTHO05D008149 1.1e-06 57.0 37 70.3
Glyma.06G134500 Glycine max HOM05D006482 ORTHO05D008149 1.9e-06 56.2 35 77.1
unitig_699.g19497 Utricularia gibba HOM05D006482 ORTHO05D008149 2.4e-06 55.8 53 58.5
Sc13g0010170 Simmondsia chinensis HOM05D006482 ORTHO05D008149 5.4e-06 54.7 54 51.9
HPP92_020659 Vanilla planifolia HOM05D001695 ORTHO05D002735 5.4e-06 54.7 57 49.1
CSS0049934 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 9.2e-06 53.9 41 63.4


User provided reference genes

Program Settings