Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G0464 Fragaria x ananassa HOM05D004833 ORTHO05D005671 5.8e-243 844.0 477 100.0
FAN17G0043 Fragaria x ananassa HOM05D004833 ORTHO05D005671 4.1e-212 741.5 451 92.7
FvH4_4g02980 Fragaria vesca HOM05D004833 ORTHO05D005671 3.1e-188 662.1 526 72.4
FAN28G1505 Fragaria x ananassa HOM05D004833 ORTHO05D005671 4.5e-187 658.3 522 76.1
FAN12G1135 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.2e-186 656.0 524 72.1
FAN12G1996 Fragaria x ananassa HOM05D004833 ORTHO05D005671 4.9e-125 452.2 271 90.4
RcHm_v2.0_Chr4g0391131 Rosa chinensis HOM05D004833 ORTHO05D005671 2.6e-118 429.9 465 63.4
RcHm_v2.0_Chr7g0224291 Rosa chinensis HOM05D004833 ORTHO05D005671 9.0e-103 378.3 451 54.8
RcHm_v2.0_Chr7g0211851 Rosa chinensis HOM05D004833 ORTHO05D005671 4.1e-95 352.8 455 51.9
MD16G1211500 Malus domestica HOM05D004833 ORTHO05D005671 2.1e-59 234.2 456 44.5
Prupe.1G033600 Prunus persica HOM05D004833 ORTHO05D005671 2.7e-54 217.2 457 44.9
Potri.010G074900 Populus trichocarpa HOM05D004833 ORTHO05D005671 1.6e-51 208.0 456 37.1
Cfa008364 Carpinus fangiana HOM05D004833 ORTHO05D005671 1.5e-49 201.4 530 34.9
Manes.03G168000 Manihot esculenta HOM05D004833 ORTHO05D005671 4.4e-49 199.9 464 36.9
QL06p016027 Quercus lobata HOM05D004833 ORTHO05D005671 9.8e-49 198.7 506 35.2
Sabra10G0033900 Salix brachista HOM05D004833 ORTHO05D005671 2.2e-48 197.6 460 35.2
CsaV3_3G012480 Cucumis sativus L. HOM05D004833 ORTHO05D005671 8.6e-45 185.7 477 34.8
MELO3C006459.2 Cucumis melo HOM05D004833 ORTHO05D005671 1.2e-43 181.8 464 34.9
ClCG05G004520 Citrullus lanatus HOM05D004833 ORTHO05D005671 4.7e-43 179.9 478 34.9
CSS0034891 Camellia sinensis var. sinensis HOM05D004833 ORTHO05D005671 8.0e-43 179.1 486 34.4
CANSAT78G0301 Cannabis sativa HOM05D004833 ORTHO05D005671 8.9e-42 175.6 454 34.4
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 1.5e-41 174.9 487 33.3
Sed0021810 Sechium edule HOM05D004833 ORTHO05D005671 1.3e-40 171.8 468 34.2
Thecc.04G248100 Theobroma cacao HOM05D004833 ORTHO05D005671 4.1e-39 166.8 466 31.8
Rhsim11G0181500 Rhododendron simsii HOM05D004833 ORTHO05D005671 1.2e-38 165.2 466 33.9
arahy.Tifrunner.gnm1.ann1.CY5RP0 Arachis hypogaea HOM05D004833 ORTHO05D005671 1.6e-38 164.9 523 32.3
Cpa.g.sc44.108 Carica papaya HOM05D004833 ORTHO05D005671 1.6e-38 164.9 459 34.0
Eucgr.G02729 Eucalyptus grandis HOM05D004833 ORTHO05D005671 2.0e-38 164.5 464 33.8
CiPaw.02G115600 Carya illinoinensis HOM05D004833 ORTHO05D005671 5.9e-38 162.9 456 39.3
Dinv29897 Davidia involucrata HOM05D004833 ORTHO05D005671 1.3e-37 161.8 477 34.6
VMungo0251G0345 Vigna mungo HOM05D004833 ORTHO05D005671 8.6e-37 159.1 466 30.5
QL04p071625 Quercus lobata HOM05D004833 ORTHO05D005671 7.3e-36 156.0 129 64.3
MD13G1205500 Malus domestica HOM05D004833 ORTHO05D005671 1.2e-35 155.2 456 34.4
Hma1.2p1_0310F.1_g120780 Hydrangea macrophylla HOM05D004833 ORTHO05D005671 4.7e-35 153.3 515 32.4
arahy.Tifrunner.gnm1.ann1.DI6KST Arachis hypogaea HOM05D004833 ORTHO05D005671 6.2e-35 152.9 484 31.4
Rhsim04G0155000 Rhododendron simsii HOM05D004833 ORTHO05D005671 1.8e-34 151.4 473 30.9
BcaB04g21413 Brassica carinata HOM05D004833 ORTHO05D005671 2.3e-34 151.0 478 30.8
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 5.2e-34 149.8 448 30.6
BcaC01g04448 Brassica carinata HOM05D004833 ORTHO05D005671 6.8e-34 149.4 478 33.3
Ciclev10005174m.g Citrus clementina HOM05D004833 ORTHO05D005671 6.8e-34 149.4 455 32.3
Atru.chr4.2164 Acer truncatum HOM05D004833 ORTHO05D005671 5.8e-33 146.4 456 35.5
TWI53G1508 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 7.5e-33 146.0 449 31.6
TWI53G1633 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 7.5e-33 146.0 449 31.6
BcaC09g47698 Brassica carinata HOM05D004833 ORTHO05D005671 9.8e-33 145.6 480 35.6
BcaC01g04551 Brassica carinata HOM05D004833 ORTHO05D005671 1.3e-32 145.2 469 36.5
BraSC141t45625Z Brassica rapa HOM05D004833 ORTHO05D005671 1.3e-32 145.2 469 35.8
PGR004G1107 Punica granatum HOM05D004833 ORTHO05D005671 2.9e-32 144.1 485 29.5
BraA05t23142Z Brassica rapa HOM05D004833 ORTHO05D005671 6.4e-32 142.9 469 30.7
BolC1t05907H Brassica oleracea HOM05D004833 ORTHO05D005671 8.3e-32 142.5 480 35.4
Thhalv10020728m.g Eutrema salsugineum HOM05D004833 ORTHO05D005671 8.3e-32 142.5 480 31.7
THA.LOC104808605 Tarenaya hassleriana HOM05D004833 ORTHO05D005671 3.2e-31 140.6 597 27.3
Ciclev10004978m.g Citrus clementina HOM05D004833 ORTHO05D005671 4.1e-31 140.2 469 29.2
BNapus_Darmor_BZH_scaffold_208p00080 Brassica napus HOM05D004833 ORTHO05D005671 7.0e-31 139.4 468 35.3
CANSAT25G0083 Cannabis sativa HOM05D004833 ORTHO05D005671 2.0e-30 137.9 449 29.4
Nn4g25548 Nelumbo nucifera HOM05D004833 ORTHO05D005671 2.7e-30 137.5 480 29.2
BraA03t12461Z Brassica rapa HOM05D005209 ORTHO05D006188 4.6e-30 136.7 480 32.3
DCAR_024234 Daucus carota HOM05D004833 ORTHO05D005671 4.6e-30 136.7 467 38.1
Phvul.002G328500 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 4.6e-30 136.7 462 29.7
TPR.G14924 Trifolium pratense HOM05D004833 ORTHO05D005671 4.6e-30 136.7 456 31.6
Glyma.07G201900 Glycine max HOM05D004833 ORTHO05D005671 6.0e-30 136.3 483 34.8
Lj4g0009172 Lotus japonicus HOM05D004833 ORTHO05D005671 1.3e-29 135.2 103 64.1
Glyma.13G174400 Glycine max HOM05D004833 ORTHO05D005671 1.7e-29 134.8 287 36.9
Gorai.005G047200 Gossypium raimondii HOM05D004833 ORTHO05D005671 1.7e-29 134.8 449 30.3
TAR362G1060 Trochodendron aralioides HOM05D004833 ORTHO05D005671 1.7e-29 134.8 510 29.0
MSTRG.24695 Avicennia marina HOM05D004833 ORTHO05D005671 6.6e-29 132.9 481 30.8
Lsat_1_v5_gn_4_144160 Lactuca sativa HOM05D004833 ORTHO05D005671 6.6e-29 132.9 474 31.4
Lj6P658T33 Lonicera japonica HOM05D004833 ORTHO05D005671 6.6e-29 132.9 211 42.7
Ah.15g090410 Amaranthus hybridus HOM05D004833 ORTHO05D005671 1.1e-28 132.1 129 52.7
EL10Ac7g16793 Beta vulgaris HOM05D004833 ORTHO05D005671 1.1e-28 132.1 594 33.0
CARHR076370 Cardamine hirsuta HOM05D004833 ORTHO05D005671 1.1e-28 132.1 576 28.5
Duzib212G0317 Durio zibethinus HOM05D004833 ORTHO05D005671 1.1e-28 132.1 455 27.5
Gohir.D02G042900 Gossypium hirsutum HOM05D004833 ORTHO05D005671 1.5e-28 131.7 454 29.7
DCAR_028835 Daucus carota HOM05D004833 ORTHO05D005671 1.9e-28 131.3 444 30.4
AT4G14490 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 3.3e-28 130.6 155 47.7
HanXRQChr09g0257341 Helianthus annuus HOM05D004833 ORTHO05D005671 4.3e-28 130.2 466 32.4
PSO761G0588 Papaver somniferum HOM05D004833 ORTHO05D005671 4.3e-28 130.2 503 27.8
Oeu002595.1 Olea europaea HOM05D004833 ORTHO05D005671 5.6e-28 129.8 489 30.9
PSO210G7662 Papaver somniferum HOM05D004833 ORTHO05D005671 5.6e-28 129.8 481 29.9
Aqoxy4G02560 Aquilegia oxysepala HOM05D004833 ORTHO05D005671 1.2e-27 128.6 469 31.6
Psat7g116640 Pisum sativum HOM05D004833 ORTHO05D005671 1.6e-27 128.3 194 40.7
Sc25g0004110 Simmondsia chinensis HOM05D004833 ORTHO05D005671 1.6e-27 128.3 502 30.7
Carub.0003s0149 Capsella rubella HOM05D004833 ORTHO05D005671 2.1e-27 127.9 285 37.9
AL3G11690 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 2.8e-27 127.5 284 37.7
AT3G02400 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 2.8e-27 127.5 536 27.8
Medtr4g088240 Medicago truncatula HOM05D004833 ORTHO05D005671 3.6e-27 127.1 210 42.9
Aa31LG9G2800 Aethionema arabicum HOM05D004833 ORTHO05D005671 6.2e-27 126.3 160 46.2
Carub.0007s2773 Capsella rubella HOM05D004833 ORTHO05D005671 8.1e-27 125.9 451 30.6
COL.COLO4_15806 Corchorus olitorius HOM05D004833 ORTHO05D005671 8.1e-27 125.9 455 30.3
A03p32920 Brassica napus HOM05D004833 ORTHO05D005671 1.4e-26 125.2 499 29.7
Gohir.A02G036200 Gossypium hirsutum HOM05D004833 ORTHO05D005671 1.4e-26 125.2 448 29.2
Sp3g01440 Schrenkiella parvula HOM05D004833 ORTHO05D005671 1.4e-26 125.2 519 33.3
C03p40050 Brassica napus HOM05D005209 ORTHO05D006188 1.8e-26 124.8 472 30.9
BolC3t16270H Brassica oleracea HOM05D005209 ORTHO05D006188 1.8e-26 124.8 472 30.9
TAR633G1100 Trochodendron aralioides HOM05D004833 ORTHO05D005671 1.8e-26 124.8 494 28.7
MBI19_g03257_MAGBIO Magnolia biondii HOM05D004833 ORTHO05D005671 5.2e-26 123.2 461 32.3
Nitab4.5_0002289g0040 Nicotiana tabacum HOM05D004833 ORTHO05D005671 5.2e-26 123.2 238 38.2
Ca_18598_v3 Cicer arietinum L. HOM05D004833 ORTHO05D005671 6.8e-26 122.9 476 29.4
HanXRQChr05g0145861 Helianthus annuus HOM05D004833 ORTHO05D005671 8.9e-26 122.5 453 31.3
HanXRQChr11g0331421 Helianthus annuus HOM05D004833 ORTHO05D005671 8.9e-26 122.5 453 31.3
Duzib151G1051 Durio zibethinus HOM05D004833 ORTHO05D005671 3.4e-25 120.6 208 38.5
Nitab4.5_0001381g0160 Nicotiana tabacum HOM05D004833 ORTHO05D005671 4.4e-25 120.2 217 39.2
Aa31LG8G9600 Aethionema arabicum HOM05D004833 ORTHO05D005671 5.8e-25 119.8 563 26.3
Sopen08g026960 Solanum pennellii HOM05D004833 ORTHO05D005671 9.9e-25 119.0 216 40.7
A05p45200 Brassica napus HOM05D004833 ORTHO05D005671 1.7e-24 118.2 465 27.3
AL7G41650 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 2.2e-24 117.9 279 36.2
SHI08746 Sapria himalayana HOM05D004833 ORTHO05D005671 2.9e-24 117.5 445 28.5
Peaxi162Scf00209g00118 Petunia axillaris HOM05D004833 ORTHO05D005671 3.7e-24 117.1 506 27.1
PGSC0003DMG400004768 Solanum tuberosum HOM05D004833 ORTHO05D005671 3.7e-24 117.1 202 39.6
Migut.N00255 Erythranthe guttata HOM05D004833 ORTHO05D005671 6.4e-24 116.3 470 27.9
ATR0693G179 Amborella trichopoda HOM05D004833 ORTHO05D005671 8.3e-24 115.9 128 48.4
Solyc08g078470.4 Solanum lycopersicum HOM05D004833 ORTHO05D005671 1.1e-23 115.5 216 40.3
BcaC05g30352 Brassica carinata HOM05D004833 ORTHO05D005671 5.4e-23 113.2 486 31.1
C09p75700 Brassica napus HOM05D004833 ORTHO05D005671 7.1e-23 112.8 486 31.1
CDE09G0593 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 7.1e-23 112.8 195 35.4
Lj4g0026393 Lotus japonicus HOM05D004833 ORTHO05D005671 7.1e-23 112.8 469 29.2
ECA232G0897 Erigeron canadensis HOM05D004833 ORTHO05D005671 3.5e-22 110.5 161 46.6
ECA232G1138 Erigeron canadensis HOM05D004833 ORTHO05D005671 6.0e-22 109.8 152 48.0
SalBow3G2302 Salvia bowleyana HOM05D004833 ORTHO05D005671 7.8e-22 109.4 461 29.3
ECA234G1378 Erigeron canadensis HOM05D000038 ORTHO05D000423 2.3e-21 107.8 148 49.3
HPP92_014115 Vanilla planifolia HOM05D004833 ORTHO05D005671 3.0e-21 107.5 283 36.4
Medtr8g069140 Medicago truncatula HOM05D004833 ORTHO05D005671 8.6e-21 105.9 530 30.2
Lalb_Chr05g0218581 Lupinus albus HOM05D004833 ORTHO05D005671 1.5e-20 105.1 461 29.1
Medtr4g088235 Medicago truncatula HOM05D004833 ORTHO05D005671 2.5e-20 104.4 526 30.0
SGA_v2.0_scaffold308G48094 Striga asiatica HOM05D004833 ORTHO05D005671 3.3e-20 104.0 440 28.9
HPP92_002726 Vanilla planifolia HOM05D004833 ORTHO05D005671 4.3e-20 103.6 106 51.9
HPP92_002667 Vanilla planifolia HOM05D004833 ORTHO05D005671 3.6e-19 100.5 236 34.3
CAN.G1178.27 Capsicum annuum HOM05D004833 ORTHO05D005671 1.4e-18 98.6 527 26.6
unitig_899.g14712 Utricularia gibba HOM05D004833 ORTHO05D005671 3.1e-18 97.4 465 26.9
SEGI_17679 Sequoiadendron giganteum HOM05D004833 ORTHO05D005671 8.9e-18 95.9 98 51.0
Os03g0728500 Oryza sativa ssp. japonica HOM05D004833 ORTHO05D005671 9.9e-17 92.4 105 43.8
unitig_52.g17411 Utricularia gibba HOM05D004833 ORTHO05D005671 1.1e-15 89.0 301 29.2
Zm00001eb056120 Zea mays HOM05D004833 ORTHO05D005671 1.4e-15 88.6 161 39.8
Zm00001eb215540 Zea mays HOM05D004833 ORTHO05D005671 4.1e-15 87.0 163 39.9
CDE02G0054 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 1.6e-14 85.1 199 31.7
BolC5t35084H Brassica oleracea HOM05D004833 ORTHO05D005671 1.7e-13 81.6 96 45.8
Pp3c19_11080 Physcomitrium patens HOM05D004833 ORTHO05D005671 2.3e-13 81.3 109 42.2
Cfa008363 Carpinus fangiana HOM05D004833 ORTHO05D005671 1.1e-12 79.0 237 33.8
Phvul.002G234300 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 1.2e-09 68.9 52 61.5
Pp3c18_4140 Physcomitrium patens HOM05D004833 ORTHO05D005671 1.2e-09 68.9 102 39.2
CBR_g21751 Chara braunii HOM05D004833 ORTHO05D005671 2.6e-09 67.8 101 37.6
MCO07G413 Micromonas commoda HOM05D004938 ORTHO05D006035 3.2e-07 60.8 109 36.7
AagrBONN_evm.TU.Sc2ySwM_368.3218 Anthoceros agrestis HOM05D004833 ORTHO05D005671 9.3e-07 59.3 115 31.3
Lj6P658T32 Lonicera japonica HOM05D004833 ORTHO05D005671 1.2e-06 58.9 77 39.0
Medtr3g092440 Medicago truncatula HOM05D004833 ORTHO05D005671 3.5e-06 57.4 110 39.1
CiPaw.01G189200 Carya illinoinensis HOM05D004833 ORTHO05D005671 7.8e-06 56.2 80 41.2


User provided reference genes

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