Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G0382 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.1e-44 183.0 94 100.0
FvH4_3g23810 Fragaria vesca HOM05D007252 ORTHO05D009074 1.2e-19 99.8 70 77.1
FAN11G0552 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.2e-19 99.8 70 77.1
FAN21G1608 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.9e-17 92.4 46 97.8
RcHm_v2.0_Chr5g0041991 Rosa chinensis HOM05D007252 ORTHO05D009074 4.3e-17 91.3 46 95.7
MD11G1206600 Malus domestica HOM05D007252 ORTHO05D009074 5.9e-14 80.9 47 80.9
Prupe.4G229900 Prunus persica HOM05D007252 ORTHO05D009074 2.2e-13 79.0 46 78.3
MD03G1190100 Malus domestica HOM05D007252 ORTHO05D009074 3.8e-13 78.2 46 82.6
Aa31LG5G12260 Aethionema arabicum HOM05D007252 ORTHO05D009074 1.1e-12 76.6 56 66.1
Cfa020240 Carpinus fangiana HOM05D007252 ORTHO05D009074 3.2e-12 75.1 46 76.1
A01p17930 Brassica napus HOM05D007252 ORTHO05D009074 5.5e-12 74.3 61 55.7
CSS0032760 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 1.2e-11 73.2 46 73.9
CANSAT80G1100 Cannabis sativa HOM05D007252 ORTHO05D009074 2.1e-11 72.4 46 71.7
QL08p064685 Quercus lobata HOM05D007252 ORTHO05D009074 2.1e-11 72.4 47 70.2
C01p22730 Brassica napus HOM05D007252 ORTHO05D009074 3.6e-11 71.6 48 66.7
Ciclev10010136m.g Citrus clementina HOM05D007252 ORTHO05D009074 4.6e-11 71.2 43 74.4
COL.COLO4_09763 Corchorus olitorius HOM05D007252 ORTHO05D009074 4.6e-11 71.2 46 69.6
CSS0018987 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 6.1e-11 70.9 46 71.7
BcaC09g50629 Brassica carinata HOM05D007252 ORTHO05D009074 7.9e-11 70.5 46 69.6
BcaC09g52252 Brassica carinata HOM05D007252 ORTHO05D009074 7.9e-11 70.5 46 69.6
BolC1t02202H Brassica oleracea HOM05D007252 ORTHO05D009074 7.9e-11 70.5 46 69.6
BraA01t01748Z Brassica rapa HOM05D007252 ORTHO05D009074 1.0e-10 70.1 46 69.6
Gohir.A04G010100 Gossypium hirsutum HOM05D007252 ORTHO05D009074 1.0e-10 70.1 46 71.7
Phvul.006G051100 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 1.0e-10 70.1 46 67.4
BcaB03g12504 Brassica carinata HOM05D007252 ORTHO05D009074 1.4e-10 69.7 46 69.6
A08p20750 Brassica napus HOM05D007252 ORTHO05D009074 1.4e-10 69.7 46 69.6
VMungo0540G2390 Vigna mungo HOM05D007252 ORTHO05D009074 1.4e-10 69.7 46 67.4
AL7G26180 Arabidopsis lyrata HOM05D007252 ORTHO05D009074 1.8e-10 69.3 46 67.4
Carub.0007s1418 Capsella rubella HOM05D007252 ORTHO05D009074 1.8e-10 69.3 46 67.4
Thecc.07G024200 Theobroma cacao HOM05D007252 ORTHO05D009074 3.0e-10 68.6 46 67.4
BolC8t48668H Brassica oleracea HOM05D007252 ORTHO05D009074 3.9e-10 68.2 46 69.6
BraA08t34029Z Brassica rapa HOM05D007252 ORTHO05D009074 3.9e-10 68.2 46 67.4
Manes.03G134300 Manihot esculenta HOM05D007252 ORTHO05D009074 3.9e-10 68.2 46 67.4
BcaC07g38242 Brassica carinata HOM05D007252 ORTHO05D009074 5.1e-10 67.8 46 69.6
C08p09910 Brassica napus HOM05D007252 ORTHO05D009074 5.1e-10 67.8 46 69.6
Gohir.D05G377900 Gossypium hirsutum HOM05D007252 ORTHO05D009074 5.1e-10 67.8 46 69.6
Gorai.009G445700 Gossypium raimondii HOM05D007252 ORTHO05D009074 6.7e-10 67.4 46 67.4
CAN.G337.42 Capsicum annuum HOM05D007252 ORTHO05D009074 8.8e-10 67.0 46 67.4
Ciclev10003084m.g Citrus clementina HOM05D007252 ORTHO05D009074 8.8e-10 67.0 45 68.9
SHI26548 Sapria himalayana HOM05D007252 ORTHO05D009074 8.8e-10 67.0 84 50.0
CARHR234280 Cardamine hirsuta HOM05D007252 ORTHO05D009074 1.1e-09 66.6 46 67.4
PGSC0003DMG402022195 Solanum tuberosum HOM05D007252 ORTHO05D009074 2.0e-09 65.9 46 65.2
Ca_20134_v3 Cicer arietinum L. HOM05D007252 ORTHO05D009074 3.3e-09 65.1 46 63.0
Lalb_Chr15g0081831 Lupinus albus HOM05D007252 ORTHO05D009074 3.3e-09 65.1 46 63.0
Lalb_Chr15g0081851 Lupinus albus HOM05D007252 ORTHO05D009074 3.3e-09 65.1 46 63.0
Lalb_Chr15g0081871 Lupinus albus HOM05D007252 ORTHO05D009074 3.3e-09 65.1 46 63.0
Sc07g0002910 Simmondsia chinensis HOM05D007252 ORTHO05D009074 3.3e-09 65.1 46 60.9
AUR62015933 Chenopodium quinoa HOM05D007252 ORTHO05D009074 4.3e-09 64.7 46 63.0
Lalb_Chr15g0081811 Lupinus albus HOM05D007252 ORTHO05D009074 4.3e-09 64.7 46 63.0
Sabra08G0007100 Salix brachista HOM05D000045 ORTHO05D000067 4.3e-09 64.7 47 59.6
Nn7g36100 Nelumbo nucifera HOM05D002789 ORTHO05D003185 9.7e-09 63.5 46 63.0
EL10Ac4g07630 Beta vulgaris HOM05D007252 ORTHO05D009074 1.7e-08 62.8 46 58.7
AUR62040676 Chenopodium quinoa HOM05D007252 ORTHO05D009074 2.2e-08 62.4 46 60.9
Potri.008G011620 Populus trichocarpa HOM05D007252 ORTHO05D009074 2.2e-08 62.4 46 58.7
DCAR_020730 Daucus carota HOM05D006095 ORTHO05D001225 3.7e-08 61.6 48 58.3
Eucgr.F03517 Eucalyptus grandis HOM05D007252 ORTHO05D009074 4.8e-08 61.2 46 58.7
Actinidia39080 Actinidia chinensis HOM05D007252 ORTHO05D009074 1.1e-07 60.1 43 60.5
Lsat_1_v5_gn_0_15441 Lactuca sativa HOM05D007252 ORTHO05D009074 1.1e-07 60.1 46 56.5
Glyma.18G085000 Glycine max HOM05D007252 ORTHO05D009074 1.4e-07 59.7 45 55.6
Psat3g156800 Pisum sativum HOM05D007252 ORTHO05D009074 2.4e-07 58.9 66 45.5
CiPaw.10G013800 Carya illinoinensis HOM05D007252 ORTHO05D009074 4.1e-07 58.2 42 59.5
Lj6g0008035 Lotus japonicus HOM05D007252 ORTHO05D009074 4.1e-07 58.2 46 58.7
HanXRQChr03g0076961 Helianthus annuus HOM05D007252 ORTHO05D009074 6.9e-07 57.4 47 51.1
Cfa016655 Carpinus fangiana HOM05D007252 ORTHO05D009074 9.1e-07 57.0 42 57.1
TPR.G23623 Trifolium pratense HOM05D007252 ORTHO05D009074 9.1e-07 57.0 46 56.5
TAR633G2179 Trochodendron aralioides HOM05D002789 ORTHO05D003185 9.1e-07 57.0 43 62.8
SalBow8G3523 Salvia bowleyana HOM05D007252 ORTHO05D009074 1.2e-06 56.6 46 54.3
Actinidia07909 Actinidia chinensis HOM05D007252 ORTHO05D009074 1.5e-06 56.2 42 59.5
TWI74G0966 Tripterygium wilfordii HOM05D007252 ORTHO05D009074 2.0e-06 55.8 42 57.1
Cpa.g.sc104.83 Carica papaya HOM05D007252 ORTHO05D009074 2.6e-06 55.5 42 57.1
Manes.09G050900 Manihot esculenta HOM05D007252 ORTHO05D009074 2.6e-06 55.5 42 59.5
HPP92_012649 Vanilla planifolia HOM05D007252 ORTHO05D009074 3.4e-06 55.1 61 44.3
ECA240G2584 Erigeron canadensis HOM05D007252 ORTHO05D009074 4.5e-06 54.7 46 56.5
Migut.M01689 Erythranthe guttata HOM05D007252 ORTHO05D009074 4.5e-06 54.7 46 54.3


User provided reference genes

Program Settings