Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G0318 Fragaria x ananassa HOM05D003497 ORTHO05D003964 7.5e-133 477.2 250 100.0
RcHm_v2.0_Chr4g0395411 Rosa chinensis HOM05D003497 ORTHO05D003964 6.7e-33 145.2 139 62.6
FvH4_4g04631 Fragaria vesca HOM05D003497 ORTHO05D003964 8.2e-23 111.7 143 47.6
Prupe.8G150500 Prunus persica HOM05D003497 ORTHO05D003964 1.3e-12 77.8 150 40.7
RcHm_v2.0_Chr4g0407391 Rosa chinensis HOM05D003497 ORTHO05D003964 2.9e-12 76.6 137 42.3
RcHm_v2.0_Chr4g0407381 Rosa chinensis HOM05D003497 ORTHO05D003964 3.8e-12 76.3 127 41.7
FvH4_5g20811 Fragaria vesca HOM05D003497 ORTHO05D003964 1.5e-11 74.3 129 38.8
FAN04G2985 Fragaria x ananassa HOM05D003497 ORTHO05D003964 1.5e-11 74.3 129 38.8
Cfa004695 Carpinus fangiana HOM05D003497 ORTHO05D003964 1.9e-11 73.9 131 39.7
Manes.07G056700 Manihot esculenta HOM05D003497 ORTHO05D003964 3.2e-11 73.2 125 40.0
FAN18G2835 Fragaria x ananassa HOM05D003497 ORTHO05D003964 4.2e-11 72.8 129 38.0
Sc18g0007350 Simmondsia chinensis HOM05D003497 ORTHO05D003964 5.5e-11 72.4 154 33.8
MD10G1110400 Malus domestica HOM05D003497 ORTHO05D003964 1.2e-10 71.2 96 45.8
RcHm_v2.0_Chr4g0407371 Rosa chinensis HOM05D003497 ORTHO05D003964 1.2e-10 71.2 121 42.1
MELO3C018024.2 Cucumis melo HOM05D003497 ORTHO05D003964 2.1e-10 70.5 123 38.2
CsaV3_4G000070 Cucumis sativus L. HOM05D003497 ORTHO05D003964 3.6e-10 69.7 162 34.0
FAN27G0942 Fragaria x ananassa HOM05D003497 ORTHO05D003964 3.6e-10 69.7 143 39.2
ClCG10G010030 Citrullus lanatus HOM05D003497 ORTHO05D003964 4.7e-10 69.3 123 37.4
MD10G1110300 Malus domestica HOM05D003497 ORTHO05D003964 8.0e-10 68.6 96 46.9
Sed0023460 Sechium edule HOM05D003497 ORTHO05D003964 1.4e-09 67.8 127 38.6
Haze_10291 Corylus avellana HOM05D003497 ORTHO05D003964 1.8e-09 67.4 155 34.8
QL11p029247 Quercus lobata HOM05D003497 ORTHO05D003964 1.8e-09 67.4 122 38.5
Os03g0232000 Oryza sativa ssp. japonica HOM05D003497 ORTHO05D003964 3.0e-09 66.6 105 41.0
RcHm_v2.0_Chr6g0248431 Rosa chinensis HOM05D003497 ORTHO05D003964 3.0e-09 66.6 127 40.2
Thecc.02G120200 Theobroma cacao HOM05D003497 ORTHO05D003964 5.2e-09 65.9 152 32.9
FAN20G1538 Fragaria x ananassa HOM05D003497 ORTHO05D003964 6.8e-09 65.5 148 35.1
FAN20G2306 Fragaria x ananassa HOM05D003497 ORTHO05D003964 6.8e-09 65.5 148 35.1
CSS0013739 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 8.8e-09 65.1 91 46.2
FvH4_2g03310 Fragaria vesca HOM05D003497 ORTHO05D003964 1.2e-08 64.7 129 38.8
Rhsim05G0093000 Rhododendron simsii HOM05D003497 ORTHO05D003964 1.2e-08 64.7 91 44.0
SGA_v2.0_scaffold225G43063 Striga asiatica HOM05D003497 ORTHO05D003964 1.5e-08 64.3 147 32.7
HanXRQChr16g0502181 Helianthus annuus HOM05D003497 ORTHO05D003964 7.5e-08 62.0 133 35.3
Oeu025307.1 Olea europaea HOM05D003497 ORTHO05D003964 7.5e-08 62.0 162 35.8
vmacro22257 Vaccinium macrocarpon HOM05D003497 ORTHO05D003964 7.5e-08 62.0 91 42.9
ECA234G0007 Erigeron canadensis HOM05D003497 ORTHO05D003964 9.8e-08 61.6 145 34.5
COL.COLO4_32482 Corchorus olitorius HOM05D003497 ORTHO05D003964 1.3e-07 61.2 165 31.5
Actinidia28001 Actinidia chinensis HOM05D000349 ORTHO05D003964 2.2e-07 60.5 91 44.0
MSTRG.16671 Avicennia marina HOM05D003497 ORTHO05D003964 2.2e-07 60.5 154 35.7
Nn3g19312 Nelumbo nucifera HOM05D003497 ORTHO05D003964 2.2e-07 60.5 160 29.4
arahy.Tifrunner.gnm1.ann1.6MCD86 Arachis hypogaea HOM05D003497 ORTHO05D003964 2.8e-07 60.1 132 33.3
Ca_11026_v3 Cicer arietinum L. HOM05D003497 ORTHO05D003964 2.8e-07 60.1 123 35.0
TAR381G0023 Trochodendron aralioides HOM05D003497 ORTHO05D003964 3.7e-07 59.7 172 31.4
Zm00001eb009480 Zea mays HOM05D003497 ORTHO05D003964 3.7e-07 59.7 79 41.8
Medtr4g019560 Medicago truncatula HOM05D003497 ORTHO05D003964 4.9e-07 59.3 127 35.4
MD10G1110600 Malus domestica HOM05D003497 ORTHO05D003964 6.3e-07 58.9 123 36.6
Medtr7g057330 Medicago truncatula HOM05D003497 ORTHO05D003964 6.3e-07 58.9 126 34.9
Medtr1g106020 Medicago truncatula HOM05D003497 ORTHO05D003964 1.4e-06 57.8 141 33.3
PGR102G1733 Punica granatum HOM05D003497 ORTHO05D003964 1.4e-06 57.8 147 36.1
CANSAT25G1915 Cannabis sativa HOM05D003497 ORTHO05D003964 2.4e-06 57.0 121 37.2
Eucgr.G00280 Eucalyptus grandis HOM05D003497 ORTHO05D003964 3.1e-06 56.6 131 33.6
TPR.G21155 Trifolium pratense HOM05D003497 ORTHO05D003964 3.1e-06 56.6 105 37.1
Cc02_g20070 Coffea canephora HOM05D003497 ORTHO05D003964 7.0e-06 55.5 91 41.8
Aa31LG7G7660 Aethionema arabicum HOM05D003497 ORTHO05D003964 9.2e-06 55.1 164 27.4
Glyma.20G135900 Glycine max HOM05D003497 ORTHO05D003964 9.2e-06 55.1 124 37.9
unitig_744.g24206 Utricularia gibba HOM05D003497 ORTHO05D003964 9.2e-06 55.1 127 37.0


User provided reference genes

Program Settings