Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G0300 Fragaria x ananassa HOM05D007002 ORTHO05D008602 4.4e-28 127.1 58 100.0
FvH4_6g02330 Fragaria vesca HOM05D007002 ORTHO05D008602 1.2e-14 82.4 44 79.5
FAN09G1583 Fragaria x ananassa HOM05D007002 ORTHO05D008602 1.2e-14 82.4 44 79.5
FAN14G0334 Fragaria x ananassa HOM05D007002 ORTHO05D008602 1.2e-14 82.4 44 79.5
FAN02G3625 Fragaria x ananassa HOM05D007002 ORTHO05D008602 2.8e-14 81.3 44 77.3
FAN05G0162 Fragaria x ananassa HOM05D007002 ORTHO05D008602 4.7e-14 80.5 49 73.5
FAN14G1984 Fragaria x ananassa HOM05D007002 ORTHO05D008602 4.7e-14 80.5 41 82.9
RcHm_v2.0_Chr3g0450091 Rosa chinensis HOM05D007002 ORTHO05D008602 8.9e-13 76.3 44 72.7
Prupe.6G348100 Prunus persica HOM05D007002 ORTHO05D008602 2.0e-12 75.1 44 72.7
CARHR055790 Cardamine hirsuta HOM05D007002 ORTHO05D008602 3.4e-12 74.3 44 70.5
HanXRQChr11g0322841 Helianthus annuus HOM05D007002 ORTHO05D008602 1.3e-11 72.4 43 67.4
CANSAT54G1467 Cannabis sativa HOM05D007002 ORTHO05D008602 1.7e-11 72.0 44 68.2
Hma1.2p1_0345F.1_g131170 Hydrangea macrophylla HOM05D007002 ORTHO05D008602 1.7e-11 72.0 44 65.9
AL1G65080 Arabidopsis lyrata HOM05D007002 ORTHO05D008602 2.9e-11 71.2 44 68.2
AT1G54650 Arabidopsis thaliana HOM05D007002 ORTHO05D008602 2.9e-11 71.2 44 68.2
Migut.F01549 Erythranthe guttata HOM05D007002 ORTHO05D008602 2.9e-11 71.2 44 65.9
PSO017G2142 Papaver somniferum HOM05D007002 ORTHO05D008602 2.9e-11 71.2 48 62.5
PSO063G1627 Papaver somniferum HOM05D007002 ORTHO05D008602 2.9e-11 71.2 48 62.5
SpUN0002_0110 Schrenkiella parvula HOM05D007002 ORTHO05D008602 3.7e-11 70.9 44 65.9
BcaB04g20138 Brassica carinata HOM05D007002 ORTHO05D008602 8.3e-11 69.7 41 70.7
CSS0007351 Camellia sinensis var. sinensis HOM05D007002 ORTHO05D008602 8.3e-11 69.7 44 65.9
CSS0049123 Camellia sinensis var. sinensis HOM05D007002 ORTHO05D008602 8.3e-11 69.7 44 65.9
Aa31LG2G12120 Aethionema arabicum HOM05D007002 ORTHO05D008602 1.1e-10 69.3 44 65.9
Thhalv10023577m.g Eutrema salsugineum HOM05D007002 ORTHO05D008602 1.1e-10 69.3 44 65.9
Sabra13G0040800 Salix brachista HOM05D007002 ORTHO05D008602 1.1e-10 69.3 44 65.9
Sc20g0000540 Simmondsia chinensis HOM05D007002 ORTHO05D008602 1.1e-10 69.3 43 69.8
SGA_v2.0_scaffold62G21311 Striga asiatica HOM05D007002 ORTHO05D008602 1.1e-10 69.3 42 66.7
SalBow6G1555 Salvia bowleyana HOM05D007002 ORTHO05D008602 1.4e-10 68.9 44 61.4
A01p27070 Brassica napus HOM05D007002 ORTHO05D008602 2.4e-10 68.2 45 62.2
BraA01t02842Z Brassica rapa HOM05D007002 ORTHO05D008602 2.4e-10 68.2 45 62.2
AUR62001079 Chenopodium quinoa HOM05D007002 ORTHO05D008602 2.4e-10 68.2 43 65.1
AUR62004881 Chenopodium quinoa HOM05D007002 ORTHO05D008602 2.4e-10 68.2 43 65.1
Potri.013G044300 Populus trichocarpa HOM05D007002 ORTHO05D008602 2.4e-10 68.2 44 65.9
QL03p032095 Quercus lobata HOM05D007002 ORTHO05D008602 2.4e-10 68.2 42 69.0
Atru.chr2.890 Acer truncatum HOM05D007002 ORTHO05D008602 3.2e-10 67.8 46 63.0
MD04G1230000 Malus domestica HOM05D007002 ORTHO05D008602 3.2e-10 67.8 44 65.9
GSVIVG01036211001 Vitis vinifera HOM05D007002 ORTHO05D008602 3.2e-10 67.8 44 63.6
Ah.04g163340 Amaranthus hybridus HOM05D007002 ORTHO05D008602 4.1e-10 67.4 44 61.4
Aqoxy2G03608 Aquilegia oxysepala HOM05D007002 ORTHO05D008602 4.1e-10 67.4 44 61.4
BcaC09g49617 Brassica carinata HOM05D007002 ORTHO05D008602 4.1e-10 67.4 44 63.6
C01p34450 Brassica napus HOM05D007002 ORTHO05D008602 4.1e-10 67.4 44 63.6
BolC1t03414H Brassica oleracea HOM05D007002 ORTHO05D008602 4.1e-10 67.4 44 63.6
Glyma.10G167200 Glycine max HOM05D007002 ORTHO05D008602 5.4e-10 67.0 43 65.1
Manes.09G149600 Manihot esculenta HOM05D007002 ORTHO05D008602 5.4e-10 67.0 44 63.6
Duzib106G1322 Durio zibethinus HOM05D007002 ORTHO05D008602 7.1e-10 66.6 43 62.8
vmacro20004 Vaccinium macrocarpon HOM05D007002 ORTHO05D008602 7.1e-10 66.6 44 61.4
Thecc.05G276500 Theobroma cacao HOM05D007002 ORTHO05D008602 9.2e-10 66.2 43 62.8
CiPaw.07G077800 Carya illinoinensis HOM05D007002 ORTHO05D008602 1.2e-09 65.9 42 66.7
Cc02_g09060 Coffea canephora HOM05D007002 ORTHO05D008602 1.2e-09 65.9 44 59.1
VMungo0720G3075 Vigna mungo HOM05D007002 ORTHO05D008602 1.2e-09 65.9 42 66.7
Sed0009113 Sechium edule HOM05D007002 ORTHO05D008602 1.6e-09 65.5 44 61.4
unitig_60.g25820 Utricularia gibba HOM05D007002 ORTHO05D008602 1.6e-09 65.5 43 62.8
Carub.0002s0893 Capsella rubella HOM05D007002 ORTHO05D008602 2.1e-09 65.1 41 65.9
ClCG02G016960 Citrullus lanatus HOM05D007002 ORTHO05D008602 2.1e-09 65.1 44 61.4
Ciclev10021195m.g Citrus clementina HOM05D007002 ORTHO05D008602 2.1e-09 65.1 47 59.6
MELO3C004416.2 Cucumis melo HOM05D007002 ORTHO05D008602 2.1e-09 65.1 44 61.4
CsaV3_2G003790 Cucumis sativus L. HOM05D007002 ORTHO05D008602 2.1e-09 65.1 44 61.4
Nn1g02689 Nelumbo nucifera HOM05D007002 ORTHO05D008602 2.1e-09 65.1 44 59.1
Sopen11g002050 Solanum pennellii HOM05D007002 ORTHO05D008602 2.1e-09 65.1 44 61.4
Lalb_Chr02g0149211 Lupinus albus HOM05D007002 ORTHO05D008602 2.7e-09 64.7 42 64.3
Peaxi162Scf00120g00412 Petunia axillaris HOM05D007002 ORTHO05D008602 2.7e-09 64.7 44 61.4
THA.LOC104805807 Tarenaya hassleriana HOM05D007002 ORTHO05D008602 2.7e-09 64.7 43 65.1
COL.COLO4_15422 Corchorus olitorius HOM05D007002 ORTHO05D008602 4.6e-09 63.9 43 60.5
Gohir.A11G251100 Gossypium hirsutum HOM05D007002 ORTHO05D008602 4.6e-09 63.9 43 60.5
Gohir.D11G261600 Gossypium hirsutum HOM05D007002 ORTHO05D008602 4.6e-09 63.9 43 60.5
Gorai.007G280200 Gossypium raimondii HOM05D007002 ORTHO05D008602 4.6e-09 63.9 43 60.5
Phvul.L001632 Phaseolus vulgaris HOM05D007002 ORTHO05D008602 4.6e-09 63.9 42 64.3
Zm00001eb305860 Zea mays HOM05D007002 ORTHO05D008602 6.0e-09 63.5 44 59.1
CDE05G3366 Ceratophyllum demersum HOM05D007002 ORTHO05D008602 1.0e-08 62.8 44 61.4
Hund06939 Selenicereus undatus HOM05D007002 ORTHO05D008602 1.0e-08 62.8 44 61.4
Rhsim05G0175600 Rhododendron simsii HOM05D007002 ORTHO05D008602 1.3e-08 62.4 44 56.8
Solyc11g006130.2 Solanum lycopersicum HOM05D007002 ORTHO05D008602 1.3e-08 62.4 44 59.1
CAN.G1256.10 Capsicum annuum HOM05D007002 ORTHO05D008602 1.7e-08 62.0 44 56.8
Cfa006325 Carpinus fangiana HOM05D007002 ORTHO05D008602 1.7e-08 62.0 42 66.7
Haze_04463 Corylus avellana HOM05D007002 ORTHO05D008602 1.7e-08 62.0 42 66.7
MSTRG.8094 Avicennia marina HOM05D007002 ORTHO05D008602 3.9e-08 60.8 42 57.1
ECA238G2830 Erigeron canadensis HOM05D007002 ORTHO05D008602 3.9e-08 60.8 46 63.0
Lj5g0000328 Lotus japonicus HOM05D007002 ORTHO05D008602 3.9e-08 60.8 45 62.2
Nitab4.5_0004928g0070 Nicotiana tabacum HOM05D007002 ORTHO05D008602 3.9e-08 60.8 45 60.0
Os07g0414200 Oryza sativa ssp. japonica HOM05D007002 ORTHO05D008602 3.9e-08 60.8 44 54.5
arahy.Tifrunner.gnm1.ann1.APY3E0 Arachis hypogaea HOM05D007002 ORTHO05D008602 6.6e-08 60.1 43 58.1
arahy.Tifrunner.gnm1.ann1.DW51WY Arachis hypogaea HOM05D007002 ORTHO05D008602 6.6e-08 60.1 43 58.1
DCAR_028380 Daucus carota HOM05D007002 ORTHO05D008602 8.6e-08 59.7 42 64.3
PGR142G1318 Punica granatum HOM05D007002 ORTHO05D008602 1.1e-07 59.3 43 58.1
SEGI_16446 Sequoiadendron giganteum HOM05D007002 ORTHO05D008602 1.9e-07 58.5 42 52.4
Psat6g142960 Pisum sativum HOM05D007002 ORTHO05D008602 3.3e-07 57.8 45 57.8
TWI12G1360 Tripterygium wilfordii HOM05D007002 ORTHO05D008602 3.3e-07 57.8 43 60.5
Lsat_1_v5_gn_2_107680 Lactuca sativa HOM05D007002 ORTHO05D008602 9.5e-07 56.2 63 44.4
Nitab4.5_0000856g0230 Nicotiana tabacum HOM05D007002 ORTHO05D008602 1.2e-06 55.8 45 55.6
TPR.G10263 Trifolium pratense HOM05D007002 ORTHO05D008602 1.2e-06 55.8 46 54.3
Eucgr.B02134 Eucalyptus grandis HOM05D007002 ORTHO05D008602 2.1e-06 55.1 43 58.1


User provided reference genes

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