Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 0.0e+00 1745.7 863 100.0
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 0.0e+00 1535.4 865 89.7
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 0.0e+00 1533.9 866 90.1
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 0.0e+00 1533.1 867 90.1
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 0.0e+00 1531.2 866 89.5
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 0.0e+00 1416.7 873 82.8
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 0.0e+00 1261.1 878 72.9
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 0.0e+00 1180.2 873 69.4
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 0.0e+00 1082.4 874 63.2
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 1.2e-311 1073.2 876 62.7
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 5.3e-311 1070.8 875 62.3
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 1.8e-306 1055.8 885 61.8
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 2.8e-304 1048.5 874 60.6
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 2.2e-301 1038.9 877 61.1
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 2.5e-300 1035.4 880 61.0
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 4.6e-299 1031.2 880 60.2
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 3.0e-298 1028.5 878 59.9
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 1.1e-297 1026.5 877 60.8
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 7.4e-297 1023.8 884 61.0
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 4.1e-295 1018.1 873 60.3
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 4.5e-294 1014.6 879 59.8
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 5.9e-294 1014.2 879 60.3
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 2.2e-293 1012.3 879 58.6
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 1.9e-292 1009.2 880 60.7
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 7.2e-292 1007.3 877 60.4
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 3.6e-291 1005.0 879 59.7
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 2.3e-290 1002.3 868 59.9
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 1.5e-289 999.6 877 59.0
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 3.3e-289 998.4 877 59.1
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 4.3e-289 998.0 939 56.7
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 5.7e-289 997.7 877 59.2
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 1.4e-287 993.0 881 59.5
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 2.4e-287 992.3 881 59.5
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 6.9e-287 990.7 849 61.7
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 9.1e-287 990.3 872 59.6
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 1.2e-286 989.9 879 59.2
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 2.6e-286 988.8 879 58.7
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 7.7e-286 987.3 877 58.3
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 4.4e-281 971.5 878 57.6
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 5.7e-281 971.1 879 59.0
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 7.4e-281 970.7 873 59.0
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 8.2e-280 967.2 867 57.8
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 2.9e-277 958.7 895 56.3
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 5.0e-277 958.0 878 56.6
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 8.5e-277 957.2 867 57.3
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 1.9e-276 956.1 873 57.0
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 3.2e-276 955.3 877 56.1
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 9.4e-276 953.7 871 57.7
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 2.3e-274 949.1 868 56.5
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 3.7e-272 941.8 871 55.9
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 1.6e-270 936.4 875 56.8
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 3.5e-270 935.3 867 55.7
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 3.5e-270 935.3 916 54.8
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 1.0e-269 933.7 871 56.7
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 2.5e-268 929.1 871 54.8
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 5.5e-268 927.9 875 55.3
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 3.0e-266 922.2 874 55.6
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 3.0e-266 922.2 873 54.5
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 3.0e-266 922.2 875 55.0
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 5.2e-266 921.4 874 56.6
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 6.7e-266 921.0 875 56.3
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 1.4e-263 913.3 875 55.7
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 4.1e-263 911.8 877 54.2
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 1.0e-261 907.1 874 54.0
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 1.1e-260 903.7 876 54.1
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 5.5e-260 901.4 878 54.1
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 4.7e-259 898.3 899 55.4
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 1.4e-258 896.7 878 54.4
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 1.8e-258 896.3 884 53.6
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 4.0e-258 895.2 886 54.0
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 2.0e-257 892.9 884 53.2
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 1.3e-256 890.2 884 53.4
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 2.8e-256 889.0 882 53.2
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 4.1e-255 885.2 885 52.9
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 4.1e-255 885.2 884 53.1
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 5.9e-254 881.3 883 53.0
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 2.3e-253 879.4 883 52.9
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 2.3e-253 879.4 883 52.9
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 3.8e-253 878.6 879 53.6
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 6.6e-253 877.9 872 53.9
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 7.2e-252 874.4 886 53.8
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 1.4e-250 870.2 889 52.1
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 7.0e-247 857.8 890 53.4
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 1.5e-244 850.1 890 51.8
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 4.9e-240 835.1 873 50.7
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 1.9e-236 823.2 868 50.8
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 2.6e-233 812.8 873 50.3
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 2.6e-233 812.8 881 49.5
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 3.5e-230 802.4 870 49.4
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 7.3e-228 794.7 876 48.7
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 2.1e-227 793.1 878 49.5
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 4.4e-225 785.4 804 52.2
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 1.1e-223 780.8 684 58.2
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 1.4e-223 780.4 877 48.2
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 3.2e-223 779.2 892 49.7
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 7.1e-223 778.1 643 62.2
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 2.3e-221 773.1 870 48.3
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 1.3e-208 730.7 871 45.4
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 4.5e-201 705.7 951 44.8
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 1.6e-190 670.6 611 57.4
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 3.2e-175 619.8 869 41.2
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 3.0e-173 613.2 872 41.1
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 3.0e-173 613.2 880 39.4
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 1.1e-172 611.3 902 40.5
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 1.4e-167 594.3 639 53.2
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 4.4e-156 556.2 871 39.3
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 3.1e-154 550.1 524 57.3
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 5.5e-143 512.7 866 37.3
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 4.1e-138 496.5 740 39.9
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 1.7e-136 491.1 910 34.0
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 1.2e-134 485.0 534 49.8
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 6.4e-131 472.6 875 37.5
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 1.1e-127 461.8 909 33.9
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 3.2e-122 443.7 886 33.6
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 3.2e-122 443.7 872 36.8
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 9.8e-116 422.2 338 61.5
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 4.0e-109 400.2 906 31.7
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 1.9e-103 381.3 433 48.5
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 4.9e-83 313.5 749 30.2
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 6.2e-78 296.6 361 46.3
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 7.6e-68 263.1 219 63.0
RcHm_v2.0_Chr4g0401691 Rosa chinensis HOM05D004893 ORTHO05D006320 4.6e-65 253.8 370 44.1
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 6.3e-62 243.4 673 30.3
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 2.4e-61 241.5 277 49.5
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 3.4e-60 237.7 276 49.3
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 3.8e-59 234.2 276 48.9
CANSAT11G1181 Cannabis sativa HOM05D004893 ORTHO05D006320 1.9e-58 231.9 203 57.1
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 4.7e-49 200.7 200 56.0
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 5.9e-44 183.7 868 23.8
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 4.4e-39 167.5 655 25.5
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 9.1e-37 159.8 163 52.1
Cpa.g.sc95.47 Carica papaya HOM05D004893 ORTHO05D006320 5.5e-34 150.6 131 53.4
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 2.3e-24 118.6 104 57.7
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 1.1e-18 99.8 85 56.5
BraA09t36855Z Brassica rapa HOM05D004893 ORTHO05D006320 2.9e-14 85.1 117 36.8
A09p12110 Brassica napus HOM05D004893 ORTHO05D006320 2.4e-13 82.0 117 36.8
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 2.4e-13 82.0 62 62.9
EL10Ac6g14737 Beta vulgaris HOM05D004893 ORTHO05D006320 4.1e-13 81.3 79 53.2
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 5.9e-12 77.4 172 32.6
MBI12_g20565_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 2.3e-11 75.5 65 53.8
CARHR240490 Cardamine hirsuta HOM05D004893 ORTHO05D006320 1.5e-10 72.8 85 42.4
arahy.Tifrunner.gnm1.ann1.09RZEI Arachis hypogaea HOM05D004893 ORTHO05D006320 3.3e-10 71.6 46 73.9
arahy.Tifrunner.gnm1.ann1.BHNU0I Arachis hypogaea HOM05D004893 ORTHO05D006320 4.3e-10 71.2 46 73.9
Lsat_1_v5_gn_5_51440 Lactuca sativa HOM05D004893 ORTHO05D048382 8.0e-09 67.0 94 40.4
arahy.Tifrunner.gnm1.ann1.F8045A Arachis hypogaea HOM05D062897 ORTHO05D023720 3.4e-07 61.6 59 55.9
Cre06.g254150 Chlamydomonas reinhardtii HOM05D004669 ORTHO05D005767 5.8e-07 60.8 339 25.4
Actinidia31528 Actinidia chinensis HOM05D004893 ORTHO05D006320 7.5e-07 60.5 36 77.8
arahy.Tifrunner.gnm1.ann1.NVD3GI Arachis hypogaea HOM05D001215 ORTHO05D001387 1.7e-06 59.3 56 48.2
BcaC09g48066 Brassica carinata HOM05D014782 ORTHO05D031875 2.2e-06 58.9 37 67.6
Lsat_1_v5_gn_7_93920 Lactuca sativa HOM05D004893 ORTHO05D232711 8.3e-06 57.0 82 43.9


User provided reference genes

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