Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G0264 Fragaria x ananassa HOM05D005895 ORTHO05D007916 0.0e+00 1236.9 620 100.0
FAN22G0931 Fragaria x ananassa HOM05D005895 ORTHO05D007916 0.0e+00 1147.5 616 95.1
FvH4_4g25910 Fragaria vesca HOM05D005895 ORTHO05D007916 0.0e+00 1126.3 622 92.8
FAN07G1086 Fragaria x ananassa HOM05D005895 ORTHO05D007916 0.0e+00 1116.7 621 92.3
FAN12G1268 Fragaria x ananassa HOM05D005895 ORTHO05D007916 0.0e+00 1110.9 622 92.0
FAN12G2739 Fragaria x ananassa HOM05D005895 ORTHO05D007916 0.0e+00 1086.6 610 91.6
RcHm_v2.0_Chr4g0433361 Rosa chinensis HOM05D005895 ORTHO05D007916 7.7e-304 1046.6 634 85.5
Prupe.1G247400 Prunus persica HOM05D005895 ORTHO05D007916 9.4e-270 933.3 625 78.7
MD13G1098000 Malus domestica HOM05D005895 ORTHO05D007916 4.8e-266 921.0 625 76.5
MD16G1098900 Malus domestica HOM05D005895 ORTHO05D007916 4.0e-260 901.4 626 74.1
Haze_12237 Corylus avellana HOM05D005895 ORTHO05D007916 1.3e-255 886.3 627 73.5
Cfa009199 Carpinus fangiana HOM05D005895 ORTHO05D007916 2.5e-254 882.1 628 72.9
Thecc.02G257400 Theobroma cacao HOM05D005895 ORTHO05D007916 4.7e-253 877.9 574 77.0
Gohir.A04G136400 Gossypium hirsutum HOM05D005895 ORTHO05D007916 1.7e-250 869.4 578 74.7
Gorai.012G172600 Gossypium raimondii HOM05D005895 ORTHO05D007916 2.2e-250 869.0 578 74.7
CiPaw.05G183400 Carya illinoinensis HOM05D005895 ORTHO05D007916 8.3e-250 867.1 619 71.2
CANSAT01G2589 Cannabis sativa HOM05D005895 ORTHO05D007916 4.1e-249 864.8 627 71.9
QL03p058522 Quercus lobata HOM05D005895 ORTHO05D007916 9.2e-249 863.6 622 72.5
Potri.010G044900 Populus trichocarpa HOM05D005895 ORTHO05D007916 4.6e-248 861.3 620 72.9
Atru.chr11.2133 Acer truncatum HOM05D005895 ORTHO05D007916 2.3e-247 859.0 627 71.6
COL.COLO4_24246 Corchorus olitorius HOM05D005895 ORTHO05D007916 1.1e-246 856.7 574 75.3
GSVIVG01004086001 Vitis vinifera HOM05D005895 ORTHO05D007916 1.2e-245 853.2 627 70.2
Atru.chr11.2117 Acer truncatum HOM05D005895 ORTHO05D007916 1.6e-245 852.8 627 71.1
MELO3C011963.2 Cucumis melo HOM05D005895 ORTHO05D007916 2.1e-245 852.4 574 74.9
Ciclev10030909m.g Citrus clementina HOM05D005895 ORTHO05D007916 2.8e-245 852.0 628 71.3
Actinidia27801 Actinidia chinensis HOM05D005895 ORTHO05D007916 3.6e-245 851.7 626 70.8
TAR371G0306 Trochodendron aralioides HOM05D005895 ORTHO05D007916 4.7e-245 851.3 573 74.7
Cpa.g.sc33.4 Carica papaya HOM05D005895 ORTHO05D007916 1.4e-244 849.7 568 76.1
Sabra10G0023200 Salix brachista HOM05D005895 ORTHO05D007916 4.0e-244 848.2 637 70.8
TPR.G34672 Trifolium pratense HOM05D005895 ORTHO05D007916 1.5e-243 846.3 624 71.2
CSS0018548 Camellia sinensis var. sinensis HOM05D005895 ORTHO05D007916 2.0e-243 845.9 629 70.1
Gohir.D04G179500 Gossypium hirsutum HOM05D005895 ORTHO05D007916 5.8e-243 844.3 560 75.2
Eucgr.H02516 Eucalyptus grandis HOM05D005895 ORTHO05D007916 1.3e-242 843.2 624 69.6
PGR119G2505 Punica granatum HOM05D005895 ORTHO05D007916 1.7e-242 842.8 575 74.3
CsaV3_5G031240 Cucumis sativus L. HOM05D005895 ORTHO05D007916 6.4e-242 840.9 574 73.7
Solyc04g025540.3 Solanum lycopersicum HOM05D005895 ORTHO05D007916 2.4e-241 839.0 619 69.5
MBI10_g00734_MAGBIO Magnolia biondii HOM05D005895 ORTHO05D007916 3.2e-241 838.6 625 70.1
TWI36G0590 Tripterygium wilfordii HOM05D005895 ORTHO05D007916 5.4e-241 837.8 625 70.9
CAN.G7.20 Capsicum annuum HOM05D005895 ORTHO05D007916 1.2e-240 836.6 620 69.7
BcaB05g24593 Brassica carinata HOM05D005895 ORTHO05D007916 4.6e-240 834.7 574 73.2
THA.LOC104822982 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 4.6e-240 834.7 579 72.9
Sp5g25720 Schrenkiella parvula HOM05D005895 ORTHO05D007916 7.8e-240 833.9 574 73.0
Sopen04g012770 Solanum pennellii HOM05D005895 ORTHO05D007916 7.8e-240 833.9 619 69.1
arahy.Tifrunner.gnm1.ann1.LQ91H7 Arachis hypogaea HOM05D005895 ORTHO05D007916 1.3e-239 833.2 621 69.4
Medtr8g069525 Medicago truncatula HOM05D005895 ORTHO05D007916 2.3e-239 832.4 623 70.6
DCAR_007061 Daucus carota HOM05D005895 ORTHO05D007916 3.9e-239 831.6 574 73.0
Glyma.08G283100 Glycine max HOM05D005895 ORTHO05D007916 3.9e-239 831.6 615 69.9
Sed0023548 Sechium edule HOM05D005895 ORTHO05D007916 1.9e-238 829.3 574 73.7
Lj6A811T72 Lonicera japonica HOM05D005895 ORTHO05D007916 2.5e-238 828.9 575 72.5
Aa31LG4G10380 Aethionema arabicum HOM05D005895 ORTHO05D007916 4.3e-238 828.2 578 72.1
AT1G70570 Arabidopsis thaliana HOM05D005895 ORTHO05D007916 4.3e-238 828.2 577 72.3
Thhalv10018314m.g Eutrema salsugineum HOM05D005895 ORTHO05D007916 9.5e-238 827.0 575 72.2
BraA02t06722Z Brassica rapa HOM05D005895 ORTHO05D007916 1.6e-237 826.2 634 68.1
Carub.0002s1729 Capsella rubella HOM05D005895 ORTHO05D007916 1.6e-237 826.2 630 67.9
A02p16660 Brassica napus HOM05D005895 ORTHO05D007916 2.1e-237 825.9 634 68.0
AL2G29960 Arabidopsis lyrata HOM05D005895 ORTHO05D007916 2.8e-237 825.5 577 72.3
Gorai.005G179700 Gossypium raimondii HOM05D005895 ORTHO05D007916 4.7e-237 824.7 615 69.8
Lj4g0008127 Lotus japonicus HOM05D005895 ORTHO05D007916 2.3e-236 822.4 622 69.3
C02p27920 Brassica napus HOM05D005895 ORTHO05D007916 3.1e-236 822.0 628 68.3
BolC2t08837H Brassica oleracea HOM05D005895 ORTHO05D007916 3.1e-236 822.0 628 68.3
CARHR063780 Cardamine hirsuta HOM05D005895 ORTHO05D007916 5.2e-236 821.2 574 71.6
Lalb_Chr05g0228401 Lupinus albus HOM05D005895 ORTHO05D007916 6.8e-236 820.8 618 69.7
PSO017G6602 Papaver somniferum HOM05D005895 ORTHO05D007916 1.5e-235 819.7 628 69.3
vmacro01130 Vaccinium macrocarpon HOM05D005895 ORTHO05D007916 1.5e-235 819.7 659 66.3
SalBow8G2958 Salvia bowleyana HOM05D005895 ORTHO05D007916 1.7e-234 816.2 616 68.2
Cc04_g11160 Coffea canephora HOM05D005895 ORTHO05D007916 4.9e-234 814.7 572 71.7
PSO478G2260 Papaver somniferum HOM05D005895 ORTHO05D007916 4.9e-234 814.7 629 68.4
Aqoxy5G03807 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 1.9e-233 812.8 584 70.9
Hund06020 Selenicereus undatus HOM05D005895 ORTHO05D007916 1.9e-233 812.8 577 70.9
AUR62024296 Chenopodium quinoa HOM05D005895 ORTHO05D007916 2.4e-233 812.4 624 67.8
VMungo0251G0514 Vigna mungo HOM05D005895 ORTHO05D007916 3.2e-233 812.0 624 67.6
BcaC03g15207 Brassica carinata HOM05D005895 ORTHO05D007916 2.7e-232 808.9 616 69.0
Migut.E00194 Erythranthe guttata HOM05D005895 ORTHO05D007916 3.5e-232 808.5 583 71.0
AUR62005446 Chenopodium quinoa HOM05D005895 ORTHO05D007916 1.3e-231 806.6 615 67.6
ECA233G5390 Erigeron canadensis HOM05D005895 ORTHO05D007916 2.3e-231 805.8 613 67.9
EL10Ac6g13787 Beta vulgaris HOM05D005895 ORTHO05D007916 8.6e-231 803.9 634 66.6
Nitab4.5_0006332g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 2.4e-228 795.8 624 66.2
Ah.03g133150 Amaranthus hybridus HOM05D005895 ORTHO05D007916 3.1e-228 795.4 626 66.6
Sc04g0009430 Simmondsia chinensis HOM05D005895 ORTHO05D007916 7.6e-227 790.8 557 72.4
HanXRQChr08g0208071 Helianthus annuus HOM05D005895 ORTHO05D007916 2.9e-226 788.9 575 68.9
Gohir.D02G159600 Gossypium hirsutum HOM05D005895 ORTHO05D007916 3.5e-224 781.9 554 72.2
Aqoxy3G01161 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 9.6e-222 773.9 554 69.1
HPP92_003081 Vanilla planifolia HOM05D005895 ORTHO05D007916 4.2e-217 758.4 553 68.7
ClCG05G025660 Citrullus lanatus HOM05D005895 ORTHO05D007916 7.1e-217 757.7 574 69.2
Manes.12G024300 Manihot esculenta HOM05D005895 ORTHO05D007916 1.6e-216 756.5 544 73.0
Nn4g22655 Nelumbo nucifera HOM05D005895 ORTHO05D007916 1.6e-216 756.5 626 64.1
Lsat_1_v5_gn_8_150700 Lactuca sativa HOM05D005895 ORTHO05D007916 8.7e-215 750.7 575 67.5
Zm00001eb231230 Zea mays HOM05D005895 ORTHO05D007916 3.6e-213 745.3 551 67.5
ATR0585G083 Amborella trichopoda HOM05D005895 ORTHO05D007916 2.4e-212 742.7 559 68.0
Nitab4.5_0000370g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 3.1e-212 742.3 627 63.3
Os02g0131200 Oryza sativa ssp. japonica HOM05D005895 ORTHO05D007916 3.1e-212 742.3 551 68.1
Phvul.003G063900 Phaseolus vulgaris HOM05D005895 ORTHO05D007916 5.4e-209 731.5 494 73.1
Manes.13G025800 Manihot esculenta HOM05D005895 ORTHO05D007916 1.5e-206 723.4 542 70.7
arahy.Tifrunner.gnm1.ann1.0I87EX Arachis hypogaea HOM05D005895 ORTHO05D007916 2.5e-206 722.6 550 68.5
Psat0s3772g0040 Pisum sativum HOM05D005895 ORTHO05D007916 1.6e-205 719.9 557 67.5
Ca_22578_v3 Cicer arietinum L. HOM05D005895 ORTHO05D007916 6.2e-205 718.0 553 68.0
MSTRG.2417 Avicennia marina HOM05D005895 ORTHO05D007916 2.1e-200 703.0 475 72.8
Gohir.A03G136300 Gossypium hirsutum HOM05D005895 ORTHO05D007916 1.5e-195 686.8 525 66.7
Duzib251G0200 Durio zibethinus HOM05D005895 ORTHO05D007916 3.5e-192 675.6 578 62.1
unitig_52.g17177 Utricularia gibba HOM05D005895 ORTHO05D007916 3.9e-191 672.2 571 61.3
THA.LOC104818151 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 1.9e-190 669.8 475 72.2
Oeu059911.1 Olea europaea HOM05D005895 ORTHO05D007916 1.6e-189 666.8 571 63.2
Sed0009772 Sechium edule HOM05D005895 ORTHO05D007916 3.4e-187 659.1 477 71.3
Mapoly0129s0050 Marchantia polymorpha HOM05D005895 ORTHO05D007916 5.9e-187 658.3 574 59.9
Zm00001eb209010 Zea mays HOM05D005895 ORTHO05D007916 6.7e-183 644.8 551 60.3
Pp3c12_14340 Physcomitrium patens HOM05D005895 ORTHO05D007916 3.3e-182 642.5 543 60.6
SMO119G0060 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 2.2e-173 613.2 540 60.4
Peaxi162Scf01242g00143 Petunia axillaris HOM05D005895 ORTHO05D007916 5.9e-171 605.1 470 66.8
AagrBONN_evm.TU.Sc2ySwM_368.1304 Anthoceros agrestis HOM05D005895 ORTHO05D007916 9.1e-156 554.7 480 59.6
Dinv24803 Davidia involucrata HOM05D005895 ORTHO05D007916 8.0e-152 541.6 415 69.2
Pp3c10_19590 Physcomitrium patens HOM05D005895 ORTHO05D007916 4.6e-115 419.5 397 55.7
FAN18G3006 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.3e-106 391.3 200 96.0
SHI17741 Sapria himalayana HOM05D000002 ORTHO05D000001 5.6e-89 332.8 445 46.5
CBR_g37586 Chara braunii HOM05D000019 ORTHO05D000048 2.0e-65 254.6 274 50.4
CBR_g37584 Chara braunii HOM05D000019 ORTHO05D000048 7.4e-57 226.1 209 54.1
Peaxi162Scf02256g00001 Petunia axillaris HOM05D005895 ORTHO05D007916 3.8e-53 213.8 143 72.0
SEGI_05407 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 1.0e-50 205.7 141 73.8
BcaB08g34808 Brassica carinata HOM05D005895 ORTHO05D007916 4.5e-38 163.7 101 73.3
SEGI_24305 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 3.2e-36 157.5 99 72.7
SEGI_08481 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 2.2e-32 144.8 101 64.4
DCAR_028023 Daucus carota HOM05D005895 ORTHO05D007916 2.0e-25 121.7 78 79.5
Rhsim12G0041200 Rhododendron simsii HOM05D005895 ORTHO05D007916 6.4e-24 116.7 68 76.5
SMO163G0072 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 2.0e-22 111.7 138 47.1
Ah.07g201790 Amaranthus hybridus HOM05D005895 ORTHO05D007916 5.9e-22 110.2 66 75.8
BcaB05g24594 Brassica carinata HOM05D005895 ORTHO05D012801 1.1e-20 105.9 105 50.5
A02p16670 Brassica napus HOM05D005895 ORTHO05D012801 3.1e-18 97.8 65 69.2
BraA02t06723Z Brassica rapa HOM05D005895 ORTHO05D012801 3.1e-18 97.8 65 69.2
C02p27930 Brassica napus HOM05D005895 ORTHO05D012801 1.5e-17 95.5 68 66.2
BolC2t08838H Brassica oleracea HOM05D005895 ORTHO05D012801 1.5e-17 95.5 68 66.2
DCAR_029453 Daucus carota HOM05D005895 ORTHO05D007916 1.4e-15 89.0 70 67.1
Gorai.012G172500 Gossypium raimondii HOM05D005895 ORTHO05D007916 9.2e-15 86.3 53 77.4
CSS0038190 Camellia sinensis var. sinensis HOM05D033929 ORTHO05D026310 9.5e-12 76.3 121 42.1
SEGI_38231 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 2.1e-06 58.5 40 67.5


User provided reference genes

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