Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G0217 Fragaria x ananassa HOM05D000879 ORTHO05D016068 3.2e-38 161.4 87 100.0
FAN17G0710 Fragaria x ananassa HOM05D000879 ORTHO05D002043 5.2e-17 90.9 48 97.9
FvH4_4g00310 Fragaria vesca HOM05D000879 ORTHO05D002043 2.9e-15 85.1 48 95.8
FAN12G1467 Fragaria x ananassa HOM05D000879 ORTHO05D002043 2.9e-15 85.1 48 95.8
RcHm_v2.0_Chr4g0385141 Rosa chinensis HOM05D000879 ORTHO05D002043 6.0e-13 77.4 48 87.5
MD04G1003800 Malus domestica HOM05D000879 ORTHO05D002043 2.5e-11 72.0 48 81.2
Prupe.1G003300 Prunus persica HOM05D000879 ORTHO05D002043 5.6e-11 70.9 51 76.5
FAN22G1492 Fragaria x ananassa HOM05D000879 ORTHO05D002043 7.3e-11 70.5 51 78.4
HanXRQChr02g0059581 Helianthus annuus HOM05D000879 ORTHO05D002043 1.6e-10 69.3 48 75.0
ClCG05G003550 Citrullus lanatus HOM05D000879 ORTHO05D002043 2.1e-10 68.9 67 59.7
MELO3C020466.2 Cucumis melo HOM05D000879 ORTHO05D002043 4.8e-10 67.8 65 64.6
CsaV3_2G011380 Cucumis sativus L. HOM05D000879 ORTHO05D002043 4.8e-10 67.8 65 64.6
Nn1g03141 Nelumbo nucifera HOM05D000879 ORTHO05D002043 4.8e-10 67.8 64 60.9
GSVIVG01029062001 Vitis vinifera HOM05D000879 ORTHO05D002043 8.1e-10 67.0 65 61.5
MELO3C006334.2 Cucumis melo HOM05D000879 ORTHO05D002043 1.1e-09 66.6 65 61.5
Lsat_1_v5_gn_6_63360 Lactuca sativa HOM05D000879 ORTHO05D002043 1.1e-09 66.6 52 69.2
Sabra01G0036500 Salix brachista HOM05D000879 ORTHO05D002043 1.1e-09 66.6 48 70.8
ATR0787G145 Amborella trichopoda HOM05D000879 ORTHO05D002043 1.4e-09 66.2 48 70.8
CANSAT78G1660 Cannabis sativa HOM05D000879 ORTHO05D002043 1.4e-09 66.2 68 57.4
CsaV3_3G011240 Cucumis sativus L. HOM05D000879 ORTHO05D002043 1.4e-09 66.2 65 60.0
CiPaw.01G125600 Carya illinoinensis HOM05D000879 ORTHO05D002043 2.4e-09 65.5 49 73.5
CiPaw.02G068600 Carya illinoinensis HOM05D000879 ORTHO05D002043 2.4e-09 65.5 50 70.0
Eucgr.H00090 Eucalyptus grandis HOM05D000879 ORTHO05D002043 2.4e-09 65.5 68 60.3
Manes.03G150200 Manihot esculenta HOM05D000879 ORTHO05D002043 3.1e-09 65.1 50 72.0
Potri.001G051900 Populus trichocarpa HOM05D000879 ORTHO05D002043 3.1e-09 65.1 48 68.8
Sed0025338 Sechium edule HOM05D000879 ORTHO05D002043 3.1e-09 65.1 65 61.5
Aqoxy2G03789 Aquilegia oxysepala HOM05D000879 ORTHO05D002043 4.0e-09 64.7 66 60.6
Cfa014901 Carpinus fangiana HOM05D000879 ORTHO05D002043 4.0e-09 64.7 49 73.5
Haze_11568 Corylus avellana HOM05D000879 ORTHO05D002043 4.0e-09 64.7 49 73.5
ECA233G5667 Erigeron canadensis HOM05D000879 ORTHO05D002043 4.0e-09 64.7 52 67.3
Peaxi162Scf00047g01234 Petunia axillaris HOM05D000879 ORTHO05D002043 4.0e-09 64.7 52 69.2
Actinidia39953 Actinidia chinensis HOM05D000879 ORTHO05D002043 5.3e-09 64.3 65 60.0
ClCG06G007630 Citrullus lanatus HOM05D000879 ORTHO05D002043 5.3e-09 64.3 65 61.5
PSO832G4276 Papaver somniferum HOM05D000879 ORTHO05D002043 5.3e-09 64.3 64 54.7
TAR365G0672 Trochodendron aralioides HOM05D000879 ORTHO05D002043 5.3e-09 64.3 52 69.2
TAR636G0834 Trochodendron aralioides HOM05D000879 ORTHO05D002043 5.3e-09 64.3 50 72.0
CSS0014510 Camellia sinensis var. sinensis HOM05D000879 ORTHO05D002043 6.9e-09 63.9 68 57.4
CSS0029887 Camellia sinensis var. sinensis HOM05D000879 ORTHO05D002043 6.9e-09 63.9 68 57.4
Ciclev10004931m.g Citrus clementina HOM05D000879 ORTHO05D002043 6.9e-09 63.9 66 59.1
CSS0038360 Camellia sinensis var. sinensis HOM05D000879 ORTHO05D002043 9.0e-09 63.5 68 57.4
CSS0042697 Camellia sinensis var. sinensis HOM05D000879 ORTHO05D002043 9.0e-09 63.5 68 57.4
Lj6C613T0 Lonicera japonica HOM05D000879 ORTHO05D002043 9.0e-09 63.5 52 69.2
CAN.G500.85 Capsicum annuum HOM05D000879 ORTHO05D002043 1.2e-08 63.2 52 65.4
PSO591G0205 Papaver somniferum HOM05D000879 ORTHO05D002043 1.2e-08 63.2 64 54.7
Hund05656 Selenicereus undatus HOM05D000879 ORTHO05D002043 1.2e-08 63.2 50 72.0
Sabra03G0129200 Salix brachista HOM05D000879 ORTHO05D002043 1.5e-08 62.8 49 69.4
Hund18546 Selenicereus undatus HOM05D000879 ORTHO05D002043 1.5e-08 62.8 50 72.0
Aa31LG5G4050 Aethionema arabicum HOM05D000879 ORTHO05D002043 2.0e-08 62.4 50 68.0
Ah.15g094200 Amaranthus hybridus HOM05D000879 ORTHO05D002043 2.0e-08 62.4 50 70.0
MBI10_g03403_MAGBIO Magnolia biondii HOM05D000879 ORTHO05D002043 2.0e-08 62.4 64 57.8
VMungo0720G3098 Vigna mungo HOM05D000879 ORTHO05D002043 2.0e-08 62.4 66 57.6
AL4G28710 Arabidopsis lyrata HOM05D000879 ORTHO05D002043 2.6e-08 62.0 50 68.0
AT2G33150 Arabidopsis thaliana HOM05D000879 ORTHO05D002043 2.6e-08 62.0 50 68.0
arahy.Tifrunner.gnm1.ann1.74EXT1 Arachis hypogaea HOM05D000879 ORTHO05D002043 2.6e-08 62.0 51 70.6
BcaC02g11389 Brassica carinata HOM05D000879 ORTHO05D002043 2.6e-08 62.0 51 68.6
C04p16110 Brassica napus HOM05D000879 ORTHO05D002043 2.6e-08 62.0 51 68.6
BraA05t20187Z Brassica rapa HOM05D000879 ORTHO05D002043 2.6e-08 62.0 51 68.6
CARHR127130 Cardamine hirsuta HOM05D000879 ORTHO05D002043 2.6e-08 62.0 50 68.0
DCAR_004712 Daucus carota HOM05D000879 ORTHO05D002043 2.6e-08 62.0 73 53.4
Migut.N00341 Erythranthe guttata HOM05D000879 ORTHO05D002043 2.6e-08 62.0 68 54.4
Lalb_Chr03g0036641 Lupinus albus HOM05D000879 ORTHO05D002043 2.6e-08 62.0 50 70.0
Nitab4.5_0002920g0010 Nicotiana tabacum HOM05D000879 ORTHO05D002043 2.6e-08 62.0 52 65.4
Nitab4.5_0003904g0050 Nicotiana tabacum HOM05D000879 ORTHO05D002043 2.6e-08 62.0 52 65.4
Oeu063488.1 Olea europaea HOM05D000879 ORTHO05D002043 2.6e-08 62.0 68 55.9
PGR142G3199 Punica granatum HOM05D000879 ORTHO05D002043 2.6e-08 62.0 67 55.2
Solyc09g091470.3 Solanum lycopersicum HOM05D000879 ORTHO05D002043 2.6e-08 62.0 52 65.4
Sopen09g034400 Solanum pennellii HOM05D000879 ORTHO05D002043 2.6e-08 62.0 52 65.4
PGSC0003DMG400029618 Solanum tuberosum HOM05D000879 ORTHO05D002043 2.6e-08 62.0 52 65.4
arahy.Tifrunner.gnm1.ann1.GYZ4Q6 Arachis hypogaea HOM05D000879 ORTHO05D002043 3.4e-08 61.6 51 70.6
BcaB01g03932 Brassica carinata HOM05D000879 ORTHO05D002043 3.4e-08 61.6 50 68.0
BcaC01g05858 Brassica carinata HOM05D000879 ORTHO05D002043 3.4e-08 61.6 50 68.0
A03p18590 Brassica napus HOM05D000879 ORTHO05D002043 3.4e-08 61.6 50 68.0
A05p12490 Brassica napus HOM05D000879 ORTHO05D002043 3.4e-08 61.6 50 68.0
C03p21690 Brassica napus HOM05D000879 ORTHO05D002043 3.4e-08 61.6 50 68.0
C04p62590 Brassica napus HOM05D000879 ORTHO05D002043 3.4e-08 61.6 50 68.0
BolC3t14552H Brassica oleracea HOM05D000879 ORTHO05D002043 3.4e-08 61.6 50 68.0
BraA03t11118Z Brassica rapa HOM05D000879 ORTHO05D002043 3.4e-08 61.6 50 68.0
COL.COLO4_20312 Corchorus olitorius HOM05D000879 ORTHO05D002043 3.4e-08 61.6 69 53.6
Thhalv10016622m.g Eutrema salsugineum HOM05D000879 ORTHO05D002043 3.4e-08 61.6 50 68.0
SalBow2G0943 Salvia bowleyana HOM05D000879 ORTHO05D002043 3.4e-08 61.6 52 63.5
Sp4g15450 Schrenkiella parvula HOM05D000879 ORTHO05D002043 3.4e-08 61.6 50 68.0
Sed0024789 Sechium edule HOM05D000879 ORTHO05D002043 3.4e-08 61.6 65 58.5
Sed0027347 Sechium edule HOM05D000879 ORTHO05D002043 3.4e-08 61.6 65 60.0
Atru.chr4.1777 Acer truncatum HOM05D000879 ORTHO05D002043 4.4e-08 61.2 66 56.1
BcaB02g10527 Brassica carinata HOM05D000879 ORTHO05D002043 4.4e-08 61.2 52 65.4
Medtr1g047210 Medicago truncatula HOM05D000879 ORTHO05D002043 4.4e-08 61.2 51 68.6
Actinidia30092 Actinidia chinensis HOM05D000879 ORTHO05D002043 5.8e-08 60.8 76 51.3
BcaC02g07859 Brassica carinata HOM05D000879 ORTHO05D002043 5.8e-08 60.8 50 68.0
A04p25450 Brassica napus HOM05D000879 ORTHO05D002043 5.8e-08 60.8 50 68.0
BolC4t27741H Brassica oleracea HOM05D000879 ORTHO05D002043 5.8e-08 60.8 50 68.0
BraA04t18048Z Brassica rapa HOM05D000879 ORTHO05D002043 5.8e-08 60.8 50 68.0
Cpa.g.sc59.98 Carica papaya HOM05D000879 ORTHO05D002043 5.8e-08 60.8 66 56.1
Gohir.A10G121400 Gossypium hirsutum HOM05D000879 ORTHO05D002043 5.8e-08 60.8 68 54.4
Gohir.D10G144700 Gossypium hirsutum HOM05D000879 ORTHO05D002043 5.8e-08 60.8 68 54.4
Gorai.011G161700 Gossypium raimondii HOM05D000879 ORTHO05D002043 5.8e-08 60.8 68 54.4
Rhsim02G0053400 Rhododendron simsii HOM05D000879 ORTHO05D002043 5.8e-08 60.8 68 54.4
SalBow3G1502 Salvia bowleyana HOM05D000879 ORTHO05D002043 5.8e-08 60.8 52 65.4
EL10Ac7g18093 Beta vulgaris HOM05D000879 ORTHO05D002043 7.6e-08 60.5 50 68.0
Duzib151G0020 Durio zibethinus HOM05D000879 ORTHO05D002043 7.6e-08 60.5 54 64.8
Glyma.10G124700 Glycine max HOM05D000879 ORTHO05D002043 7.6e-08 60.5 50 66.0
MD05G1179100 Malus domestica HOM05D000879 ORTHO05D002043 7.6e-08 60.5 76 50.0
Hund05657 Selenicereus undatus HOM05D000879 ORTHO05D002043 7.6e-08 60.5 50 68.0
TWI53G1368 Tripterygium wilfordii HOM05D000879 ORTHO05D002043 7.6e-08 60.5 66 56.1
BcaB06g28654 Brassica carinata HOM05D000879 ORTHO05D002043 9.9e-08 60.1 51 66.7
Cc03_g07290 Coffea canephora HOM05D000879 ORTHO05D002043 9.9e-08 60.1 68 54.4
Lalb_Chr01g0010781 Lupinus albus HOM05D000879 ORTHO05D002043 9.9e-08 60.1 52 67.3
Lalb_Chr19g0128831 Lupinus albus HOM05D000879 ORTHO05D002043 9.9e-08 60.1 67 56.7
THA.LOC104801047 Tarenaya hassleriana HOM05D000879 ORTHO05D002043 9.9e-08 60.1 50 66.0
Cfa002547 Carpinus fangiana HOM05D000879 ORTHO05D002043 1.3e-07 59.7 65 53.8
Oeu026857.1 Olea europaea HOM05D000879 ORTHO05D002043 1.3e-07 59.7 68 52.9
Os02g0817700 Oryza sativa ssp. japonica HOM05D000879 ORTHO05D002043 1.3e-07 59.7 48 70.8
THA.LOC104826110 Tarenaya hassleriana HOM05D000879 ORTHO05D002043 1.3e-07 59.7 66 54.5
Ca_11849_v3 Cicer arietinum L. HOM05D000879 ORTHO05D002043 1.7e-07 59.3 48 70.8
Duzib212G0965 Durio zibethinus HOM05D000879 ORTHO05D002043 1.7e-07 59.3 69 52.2
Duzib268G0506 Durio zibethinus HOM05D000879 ORTHO05D002043 1.7e-07 59.3 68 52.9
FvH4_2g19500 Fragaria vesca HOM05D000879 ORTHO05D002043 1.7e-07 59.3 78 48.7
Manes.12G042300 Manihot esculenta HOM05D000879 ORTHO05D002043 1.7e-07 59.3 55 61.8
Thecc.04G210500 Theobroma cacao HOM05D000879 ORTHO05D002043 1.7e-07 59.3 68 52.9
Atru.chr5.1871 Acer truncatum HOM05D000879 ORTHO05D002043 2.2e-07 58.9 52 61.5
Carub.0004s1458 Capsella rubella HOM05D000879 ORTHO05D002043 2.2e-07 58.9 50 64.0
CDE04G3682 Ceratophyllum demersum HOM05D000879 ORTHO05D002043 2.2e-07 58.9 50 66.0
Duzib211G0275 Durio zibethinus HOM05D000879 ORTHO05D002043 2.2e-07 58.9 76 47.4
CSS0016545 Camellia sinensis var. sinensis HOM05D000879 ORTHO05D002043 2.9e-07 58.5 67 56.7
CiPaw.03G151700 Carya illinoinensis HOM05D000879 ORTHO05D002043 2.9e-07 58.5 49 63.3
MSTRG.17544 Avicennia marina HOM05D000879 ORTHO05D002043 3.8e-07 58.2 67 50.7
RcHm_v2.0_Chr6g0285181 Rosa chinensis HOM05D000879 ORTHO05D002043 3.8e-07 58.2 78 47.4
vmacro15505 Vaccinium macrocarpon HOM05D000879 ORTHO05D002043 3.8e-07 58.2 51 64.7
QL09p044604 Quercus lobata HOM05D000879 ORTHO05D002043 4.9e-07 57.8 91 44.0
SalBow2G3530 Salvia bowleyana HOM05D000879 ORTHO05D002043 4.9e-07 57.8 86 45.3
unitig_32.g10867 Utricularia gibba HOM05D000879 ORTHO05D002043 4.9e-07 57.8 52 63.5
BolC6t39403H Brassica oleracea HOM05D000879 ORTHO05D016068 6.4e-07 57.4 48 62.5
Duzib138G1175 Durio zibethinus HOM05D000879 ORTHO05D002043 8.4e-07 57.0 77 49.4
FAN27G1092 Fragaria x ananassa HOM05D000879 ORTHO05D002043 8.4e-07 57.0 78 47.4
MSTRG.21948 Avicennia marina HOM05D000879 ORTHO05D002043 1.1e-06 56.6 68 50.0
MSTRG.9833 Avicennia marina HOM05D000879 ORTHO05D002043 1.1e-06 56.6 52 59.6
AUR62001293 Chenopodium quinoa HOM05D000879 ORTHO05D002043 1.1e-06 56.6 50 62.0
AUR62025678 Chenopodium quinoa HOM05D000879 ORTHO05D002043 1.1e-06 56.6 70 50.0
COL.COLO4_37470 Corchorus olitorius HOM05D000879 ORTHO05D002043 1.1e-06 56.6 77 46.8
MD06G1073900 Malus domestica HOM05D000879 ORTHO05D016068 1.1e-06 56.6 52 59.6
MD10G1168400 Malus domestica HOM05D000879 ORTHO05D016068 1.1e-06 56.6 76 47.4
FAN15G1734 Fragaria x ananassa HOM05D000879 ORTHO05D002043 1.4e-06 56.2 78 47.4
PGR044G1837 Punica granatum HOM05D000879 ORTHO05D002043 1.4e-06 56.2 54 53.7
Potri.002G216400 Populus trichocarpa HOM05D000879 ORTHO05D002043 1.9e-06 55.8 48 66.7
BcaB03g13474 Brassica carinata HOM05D000879 ORTHO05D002043 2.4e-06 55.5 49 63.3
BcaC07g42095 Brassica carinata HOM05D000879 ORTHO05D016068 2.4e-06 55.5 48 62.5
EL10Ac7g17794 Beta vulgaris HOM05D000879 ORTHO05D002043 3.2e-06 55.1 48 56.2
MELO3C018060.2 Cucumis melo HOM05D000879 ORTHO05D002043 3.2e-06 55.1 50 66.0
Migut.N02259 Erythranthe guttata HOM05D000879 ORTHO05D002043 3.2e-06 55.1 87 44.8
PGR044G0189 Punica granatum HOM05D000879 ORTHO05D002043 3.2e-06 55.1 54 51.9
Glyma.20G077000 Glycine max HOM05D000879 ORTHO05D002043 4.2e-06 54.7 48 64.6
Gohir.D11G142300 Gossypium hirsutum HOM05D000879 ORTHO05D002043 4.2e-06 54.7 50 64.0
Lj6g0008583 Lotus japonicus HOM05D000879 ORTHO05D002043 4.2e-06 54.7 56 60.7
Peaxi162Scf00052g00819 Petunia axillaris HOM05D000879 ORTHO05D002043 5.4e-06 54.3 66 50.0
CsaV3_3G028760 Cucumis sativus L. HOM05D000879 ORTHO05D002043 7.1e-06 53.9 50 64.0
Gorai.007G152600 Gossypium raimondii HOM05D000879 ORTHO05D002043 7.1e-06 53.9 74 48.6
Oeu018505.1 Olea europaea HOM05D000879 ORTHO05D002043 7.1e-06 53.9 86 41.9
Sabra02G0168600 Salix brachista HOM05D000879 ORTHO05D002043 7.1e-06 53.9 48 62.5
CDE07G2041 Ceratophyllum demersum HOM05D000879 ORTHO05D002043 9.3e-06 53.5 64 53.1
Cc01_g17280 Coffea canephora HOM05D000879 ORTHO05D002043 9.3e-06 53.5 70 48.6


User provided reference genes

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