Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G0196 Fragaria x ananassa HOM05D004203 ORTHO05D004830 3.4e-233 811.2 394 100.0
FvH4_4g37300 Fragaria vesca HOM05D004203 ORTHO05D004830 2.8e-219 765.0 398 93.5
RcHm_v2.0_Chr4g0447121 Rosa chinensis HOM05D004203 ORTHO05D004830 4.2e-199 698.0 405 84.0
Prupe.1G350900 Prunus persica HOM05D004203 ORTHO05D004830 2.4e-178 629.0 439 71.1
MD13G1001600 Malus domestica HOM05D004203 ORTHO05D004830 9.2e-178 627.1 428 72.2
QL01p000433 Quercus lobata HOM05D004203 ORTHO05D004830 6.8e-173 610.9 409 71.6
Dinv37943 Davidia involucrata HOM05D004203 ORTHO05D004830 8.9e-173 610.5 406 73.2
TAR623G0552 Trochodendron aralioides HOM05D004203 ORTHO05D004830 8.9e-173 610.5 409 72.1
Ciclev10015311m.g Citrus clementina HOM05D004203 ORTHO05D004830 4.4e-172 608.2 412 70.1
Aqoxy3G04325 Aquilegia oxysepala HOM05D004203 ORTHO05D004830 5.8e-172 607.8 418 69.6
DCAR_026874 Daucus carota HOM05D004203 ORTHO05D004830 9.8e-172 607.1 412 70.9
Sabra07G0000900 Salix brachista HOM05D004203 ORTHO05D004830 1.4e-170 603.2 409 70.2
COL.COLO4_33135 Corchorus olitorius HOM05D004203 ORTHO05D004830 1.9e-170 602.8 410 69.8
Atru.chr11.55 Acer truncatum HOM05D004203 ORTHO05D004830 4.1e-170 601.7 408 70.3
TWI74G0727 Tripterygium wilfordii HOM05D004203 ORTHO05D004830 4.1e-170 601.7 410 70.2
Glyma.09G285700 Glycine max HOM05D004203 ORTHO05D004830 7.1e-170 600.9 414 68.4
Haze_17403 Corylus avellana HOM05D004203 ORTHO05D004830 9.2e-170 600.5 412 70.4
Potri.007G001200 Populus trichocarpa HOM05D004203 ORTHO05D004830 9.2e-170 600.5 410 70.2
Duzib248G1608 Durio zibethinus HOM05D004203 ORTHO05D004830 1.2e-169 600.1 410 70.0
Hma1.2p1_0513F.1_g169570 Hydrangea macrophylla HOM05D004203 ORTHO05D004830 1.2e-169 600.1 411 69.6
Cfa018675 Carpinus fangiana HOM05D004203 ORTHO05D004830 2.1e-169 599.4 408 71.1
ClCG01G007960 Citrullus lanatus HOM05D004203 ORTHO05D004830 2.1e-169 599.4 406 68.5
Thecc.02G153000 Theobroma cacao HOM05D004203 ORTHO05D004830 2.1e-169 599.4 410 69.5
CiPaw.15G000900 Carya illinoinensis HOM05D004203 ORTHO05D004830 2.7e-169 599.0 410 68.8
VMungo0900G0001 Vigna mungo HOM05D004203 ORTHO05D004830 7.8e-169 597.4 408 70.1
Lj2g0024262 Lotus japonicus HOM05D004203 ORTHO05D004830 3.0e-168 595.5 416 68.8
Manes.04G161600 Manihot esculenta HOM05D004203 ORTHO05D004830 3.0e-168 595.5 410 69.8
Actinidia13679 Actinidia chinensis HOM05D004203 ORTHO05D004830 3.9e-168 595.1 412 69.7
Gohir.A13G062700 Gossypium hirsutum HOM05D004203 ORTHO05D004830 6.6e-168 594.3 410 69.8
Gohir.D13G059200 Gossypium hirsutum HOM05D004203 ORTHO05D004830 1.5e-167 593.2 410 69.8
Gorai.013G067000 Gossypium raimondii HOM05D004203 ORTHO05D004830 1.5e-167 593.2 410 69.5
MBI06_g12559_MAGBIO Magnolia biondii HOM05D004203 ORTHO05D004830 4.3e-167 591.7 405 70.1
Cpa.g.sc257.7 Carica papaya HOM05D004203 ORTHO05D004830 1.2e-166 590.1 411 69.3
Cc11_g04600 Coffea canephora HOM05D004203 ORTHO05D004830 1.2e-166 590.1 413 67.8
Peaxi162Scf00603g00031 Petunia axillaris HOM05D004203 ORTHO05D004830 1.6e-166 589.7 411 69.3
Eucgr.G02607 Eucalyptus grandis HOM05D004203 ORTHO05D004830 2.8e-166 589.0 417 69.8
MELO3C005084.2 Cucumis melo HOM05D004203 ORTHO05D004830 6.2e-166 587.8 401 69.3
Sed0024681 Sechium edule HOM05D004203 ORTHO05D004830 8.1e-166 587.4 401 68.1
Oeu027932.1 Olea europaea HOM05D004203 ORTHO05D004830 1.1e-165 587.0 412 68.9
CANSAT78G1232 Cannabis sativa HOM05D004203 ORTHO05D004830 2.3e-165 585.9 412 69.4
CsaV3_5G021930 Cucumis sativus L. HOM05D004203 ORTHO05D004830 2.3e-165 585.9 401 69.6
Nitab4.5_0001803g0070 Nicotiana tabacum HOM05D004203 ORTHO05D004830 3.1e-165 585.5 403 69.5
Eucgr.G02598 Eucalyptus grandis HOM05D004203 ORTHO05D004830 8.9e-165 583.9 418 68.9
Eucgr.L03404 Eucalyptus grandis HOM05D004203 ORTHO05D004830 2.0e-164 582.8 418 68.7
Atru.chr11.58 Acer truncatum HOM05D004203 ORTHO05D004830 7.6e-164 580.9 400 69.0
Nitab4.5_0001018g0120 Nicotiana tabacum HOM05D004203 ORTHO05D004830 7.6e-164 580.9 403 69.0
PSO063G7450 Papaver somniferum HOM05D004203 ORTHO05D004830 2.2e-163 579.3 411 67.6
BraA01t03555Z Brassica rapa HOM05D004203 ORTHO05D004830 2.9e-163 578.9 418 67.2
Aa31LG8G6770 Aethionema arabicum HOM05D004203 ORTHO05D004830 4.9e-163 578.2 414 66.9
C01p44100 Brassica napus HOM05D004203 ORTHO05D004830 4.9e-163 578.2 418 67.0
PSO782G5227 Papaver somniferum HOM05D004203 ORTHO05D004830 6.4e-163 577.8 411 67.6
CSS0042488 Camellia sinensis var. sinensis HOM05D004203 ORTHO05D004830 8.4e-163 577.4 412 68.7
BcaC09g48955 Brassica carinata HOM05D004203 ORTHO05D004830 1.1e-162 577.0 418 66.7
Lalb_Chr17g0337651 Lupinus albus HOM05D004203 ORTHO05D004830 1.1e-162 577.0 411 67.9
A01p34680 Brassica napus HOM05D004203 ORTHO05D004830 1.4e-162 576.6 418 67.0
AUR62032903 Chenopodium quinoa HOM05D004203 ORTHO05D004830 3.2e-162 575.5 414 67.6
BcaB04g20673 Brassica carinata HOM05D004203 ORTHO05D004830 4.1e-162 575.1 418 67.0
BolC1t04373H Brassica oleracea HOM05D004203 ORTHO05D004830 4.1e-162 575.1 418 66.7
Cc11_g04630 Coffea canephora HOM05D004203 ORTHO05D004830 4.1e-162 575.1 415 65.1
EL10Ac9g23011 Beta vulgaris HOM05D004203 ORTHO05D004830 7.1e-162 574.3 410 68.5
Phvul.003G000800 Phaseolus vulgaris HOM05D004203 ORTHO05D004830 1.6e-161 573.2 408 67.2
PGR142G4147 Punica granatum HOM05D004203 ORTHO05D004830 2.7e-161 572.4 417 67.4
Sopen11g002260 Solanum pennellii HOM05D004203 ORTHO05D004830 2.7e-161 572.4 411 66.9
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 3.5e-161 572.0 404 66.6
PGSC0003DMG400000979 Solanum tuberosum HOM05D004203 ORTHO05D004830 3.5e-161 572.0 412 66.5
Duzib132G1212 Durio zibethinus HOM05D004203 ORTHO05D004830 6.0e-161 571.2 410 66.3
THA.LOC104826512 Tarenaya hassleriana HOM05D004203 ORTHO05D004830 7.8e-161 570.9 408 66.2
Lsat_1_v5_gn_3_35621 Lactuca sativa HOM05D004203 ORTHO05D004830 1.7e-160 569.7 408 66.9
MSTRG.8095 Avicennia marina HOM05D004203 ORTHO05D004830 2.3e-160 569.3 409 67.7
Thhalv10020793m.g Eutrema salsugineum HOM05D004203 ORTHO05D004830 3.0e-160 568.9 415 66.3
Sp3g18010 Schrenkiella parvula HOM05D004203 ORTHO05D004830 3.0e-160 568.9 414 66.9
HanXRQChr15g0472171 Helianthus annuus HOM05D004203 ORTHO05D004830 3.9e-160 568.5 420 64.8
Psat6g100840 Pisum sativum HOM05D004203 ORTHO05D004830 6.6e-160 567.8 415 65.8
ClCG01G007980 Citrullus lanatus HOM05D004203 ORTHO05D004830 1.5e-159 566.6 401 65.6
BcaB06g26068 Brassica carinata HOM05D004203 ORTHO05D004830 4.3e-159 565.1 414 66.2
BraA05t21796Z Brassica rapa HOM05D004203 ORTHO05D004830 5.6e-159 564.7 414 65.5
CARHR095520 Cardamine hirsuta HOM05D004203 ORTHO05D004830 5.6e-159 564.7 415 66.3
AUR62017749 Chenopodium quinoa HOM05D004203 ORTHO05D004830 7.3e-159 564.3 410 66.3
Migut.O00611 Erythranthe guttata HOM05D004203 ORTHO05D004830 9.6e-159 563.9 407 65.6
BcaC05g28375 Brassica carinata HOM05D004203 ORTHO05D004830 2.1e-158 562.8 414 66.4
BolC5t33177H Brassica oleracea HOM05D004203 ORTHO05D004830 2.1e-158 562.8 414 66.4
A05p29130 Brassica napus HOM05D004203 ORTHO05D004830 2.8e-158 562.4 414 65.2
AT3G19990 Arabidopsis thaliana HOM05D004203 ORTHO05D004830 3.6e-158 562.0 414 66.2
Carub.0003s1989 Capsella rubella HOM05D004203 ORTHO05D004830 3.6e-158 562.0 414 66.2
Migut.L00789 Erythranthe guttata HOM05D004203 ORTHO05D004830 3.6e-158 562.0 409 65.0
Medtr0365s0010 Medicago truncatula HOM05D004203 ORTHO05D004830 4.7e-158 561.6 412 66.5
AL3G33640 Arabidopsis lyrata HOM05D004203 ORTHO05D004830 8.1e-158 560.8 414 66.4
Hund24393 Selenicereus undatus HOM05D004203 ORTHO05D004830 1.1e-157 560.5 416 64.9
SalBow2G2162 Salvia bowleyana HOM05D004203 ORTHO05D004830 1.5e-156 556.6 406 66.0
CAN.G143.62 Capsicum annuum HOM05D004203 ORTHO05D004830 1.3e-155 553.5 412 65.3
Ca_12360_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 1.7e-155 553.1 409 66.7
Ca_12363_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 1.7e-155 553.1 409 66.7
ECA246G0515 Erigeron canadensis HOM05D004203 ORTHO05D004830 8.4e-155 550.8 410 65.4
Rhsim02G0210900 Rhododendron simsii HOM05D004203 ORTHO05D004830 2.7e-153 545.8 417 65.0
unitig_749.g13343 Utricularia gibba HOM05D004203 ORTHO05D004830 3.0e-152 542.3 407 64.4
Eucgr.G02596 Eucalyptus grandis HOM05D004203 ORTHO05D004830 4.3e-151 538.5 416 64.9
ECA246G1911 Erigeron canadensis HOM05D004203 ORTHO05D004830 1.4e-149 533.5 410 63.4
Lsat_1_v5_gn_4_27720 Lactuca sativa HOM05D004203 ORTHO05D004830 2.4e-149 532.7 414 61.1
Gohir.D13G059100 Gossypium hirsutum HOM05D004203 ORTHO05D004830 1.3e-147 526.9 406 59.9
Gorai.013G066900 Gossypium raimondii HOM05D004203 ORTHO05D004830 8.4e-147 524.2 406 59.6
ECA234G3608 Erigeron canadensis HOM05D004203 ORTHO05D004830 9.3e-146 520.8 414 59.4
Eucgr.G02594 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.6e-145 520.0 418 62.2
SHI10741 Sapria himalayana HOM05D004203 ORTHO05D004830 7.9e-145 517.7 394 63.2
ATR0124G027 Amborella trichopoda HOM05D004203 ORTHO05D004830 1.0e-144 517.3 403 61.5
Zm00001eb259360 Zea mays HOM05D004203 ORTHO05D004830 1.0e-144 517.3 403 62.0
Os02g0828200 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 3.0e-144 515.8 410 60.7
HPP92_022176 Vanilla planifolia HOM05D004203 ORTHO05D004830 8.7e-144 514.2 407 60.4
C05p44530 Brassica napus HOM05D004203 ORTHO05D004830 2.4e-141 506.1 405 61.7
HPP92_005409 Vanilla planifolia HOM05D004203 ORTHO05D004830 5.3e-141 505.0 406 60.3
SEGI_02027 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 9.0e-141 504.2 447 54.8
QL01p000454 Quercus lobata HOM05D004203 ORTHO05D004830 2.9e-139 499.2 410 60.2
Eucgr.G02595 Eucalyptus grandis HOM05D004203 ORTHO05D004830 2.1e-137 493.0 419 59.2
HanXRQChr17g0559591 Helianthus annuus HOM05D004203 ORTHO05D004830 1.3e-136 490.3 410 56.1
HanXRQChr09g0251301 Helianthus annuus HOM05D004203 ORTHO05D004830 1.6e-134 483.4 412 55.3
Lsat_1_v5_gn_8_139521 Lactuca sativa HOM05D004203 ORTHO05D004830 1.0e-131 474.2 411 55.0
QL01p000540 Quercus lobata HOM05D004203 ORTHO05D004830 2.2e-131 473.0 354 65.8
Os02g0828500 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 6.5e-131 471.5 407 55.5
MD16G1004500 Malus domestica HOM05D004203 ORTHO05D004830 5.7e-127 458.4 400 59.5
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 1.1e-125 454.1 389 55.5
AagrBONN_evm.TU.Sc2ySwM_368.1197 Anthoceros agrestis HOM05D004203 ORTHO05D004830 1.0e-123 447.6 428 53.3
SMO117G0084 Selaginella moellendorffii HOM05D004203 ORTHO05D004830 1.0e-115 421.0 395 53.7
Pp3c17_21640 Physcomitrium patens HOM05D004203 ORTHO05D004830 3.2e-114 416.0 402 51.5
Mapoly0080s0012 Marchantia polymorpha HOM05D004203 ORTHO05D004830 1.4e-112 410.6 405 49.9
TPR.G34239 Trifolium pratense HOM05D004203 ORTHO05D004830 4.1e-109 399.1 305 63.6
SEGI_01054 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 3.3e-103 379.4 336 53.0
GSVIVG01034366001 Vitis vinifera HOM05D004203 ORTHO05D004830 1.4e-101 374.0 391 53.2
Sc08g0004160 Simmondsia chinensis HOM05D004203 ORTHO05D004830 1.6e-100 370.5 256 67.6
Cre16.g671500 Chlamydomonas reinhardtii HOM05D004203 ORTHO05D004830 1.2e-97 360.9 405 45.4
Thecc.02G152900 Theobroma cacao HOM05D004203 ORTHO05D004830 2.3e-96 356.7 294 57.8
GSVIVG01034368001 Vitis vinifera HOM05D004203 ORTHO05D004830 1.2e-95 354.4 400 51.0
Prupe.1G351100 Prunus persica HOM05D004203 ORTHO05D004830 9.4e-90 334.7 239 67.4
SEGI_32381 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 3.8e-83 312.8 284 52.1
Medtr0400s0020 Medicago truncatula HOM05D004203 ORTHO05D004830 3.6e-81 306.2 223 65.5
Lj3A845T90 Lonicera japonica HOM05D004203 ORTHO05D004830 1.4e-80 304.3 237 64.6
Lj3C845T9 Lonicera japonica HOM05D004203 ORTHO05D004830 2.6e-55 220.3 149 66.4
SEGI_16211 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 4.1e-53 213.0 298 39.9
FAN12G3670 Fragaria x ananassa HOM05D004203 ORTHO05D004830 4.6e-52 209.5 150 73.3
Sc08g0004150 Simmondsia chinensis HOM05D004203 ORTHO05D004830 8.9e-48 195.3 134 64.9
Sc08g0004170 Simmondsia chinensis HOM05D004203 ORTHO05D004830 7.1e-45 185.7 127 65.4
Atru.chr11.60 Acer truncatum HOM05D004203 ORTHO05D004830 3.0e-43 180.3 161 56.5
BcaB08g37041 Brassica carinata HOM05D004203 ORTHO05D004830 3.1e-40 170.2 139 61.9
Solyc11g006360.1 Solanum lycopersicum HOM05D004203 ORTHO05D004830 2.2e-38 164.1 112 63.4
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 2.7e-36 157.1 388 27.8
SEGI_00877 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.5e-34 151.4 184 48.4
Atru.chr11.61 Acer truncatum HOM05D004203 ORTHO05D004830 9.9e-31 138.7 126 55.6
BcaB06g27490 Brassica carinata HOM05D004203 ORTHO05D004830 4.2e-29 133.3 141 52.5
BcaB06g26576 Brassica carinata HOM05D004203 ORTHO05D004830 9.9e-23 112.1 78 67.9
Sc08g0004180 Simmondsia chinensis HOM05D004203 ORTHO05D004830 1.4e-21 108.2 68 70.6
BcaB08g37040 Brassica carinata HOM05D004203 ORTHO05D004830 1.3e-19 101.7 66 71.2
Os03g0251425 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 3.3e-18 97.1 84 51.2
BcaC07g39871 Brassica carinata HOM05D004203 ORTHO05D004830 3.7e-17 93.6 79 57.0
Sc08g0004140 Simmondsia chinensis HOM05D004203 ORTHO05D004830 8.2e-17 92.4 79 55.7
SEGI_08354 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.8e-16 91.3 151 36.4
BcaB06g27492 Brassica carinata HOM05D004203 ORTHO05D004830 1.5e-15 88.2 92 52.2
BcaB06g27488 Brassica carinata HOM05D004203 ORTHO05D004830 2.6e-15 87.4 83 53.0
BcaB06g27495 Brassica carinata HOM05D004203 ORTHO05D004830 1.9e-13 81.3 52 71.2
GSVIVG01034364001 Vitis vinifera HOM05D004203 ORTHO05D004830 3.3e-10 70.5 111 36.9
COL.COLO4_33125 Corchorus olitorius HOM05D004203 ORTHO05D004830 1.6e-09 68.2 39 74.4
BcaB06g27494 Brassica carinata HOM05D004203 ORTHO05D004830 2.2e-09 67.8 57 57.9
MCO08G255 Micromonas commoda HOM05D004203 ORTHO05D004830 1.4e-08 65.1 106 34.9
Pp3c14_4390 Physcomitrium patens HOM05D004203 ORTHO05D004830 2.4e-08 64.3 76 38.2
SEGI_22616 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 2.9e-06 57.4 70 38.6
BcaB05g24942 Brassica carinata HOM05D004203 ORTHO05D004830 6.5e-06 56.2 37 64.9
Cpa.g.c45316 Carica papaya HOM05D004203 ORTHO05D004830 6.5e-06 56.2 41 63.4


User provided reference genes

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