Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.1e-215 753.1 382 100.0
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 6.2e-171 604.4 304 98.7
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.9e-167 592.8 311 95.8
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 5.6e-164 581.3 304 95.1
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 3.9e-149 531.9 356 77.0
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 5.1e-149 531.6 303 86.5
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 1.1e-143 513.8 301 83.4
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 7.9e-142 507.7 304 81.9
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 3.0e-141 505.8 301 81.4
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 1.1e-140 503.8 303 83.2
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.5e-140 503.4 266 95.1
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 2.5e-140 502.7 306 81.7
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 2.1e-139 499.6 306 80.7
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 2.1e-139 499.6 309 78.3
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 3.7e-139 498.8 306 80.7
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 3.7e-139 498.8 342 74.3
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 8.2e-139 497.7 304 81.2
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 1.1e-138 497.3 354 73.2
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 1.1e-138 497.3 304 80.9
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 1.4e-138 496.9 306 81.4
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 1.8e-138 496.5 336 73.8
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 1.8e-138 496.5 352 71.6
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 4.0e-138 495.4 306 78.4
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 9.0e-138 494.2 309 77.7
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 2.0e-137 493.0 300 80.7
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 3.4e-137 492.3 303 79.5
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 3.4e-137 492.3 302 79.1
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 2.2e-136 489.6 302 78.8
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 2.9e-136 489.2 302 78.5
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 8.4e-136 487.6 344 73.8
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 8.4e-136 487.6 299 78.3
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 2.5e-135 486.1 321 75.7
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 2.5e-135 486.1 302 77.8
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 3.2e-135 485.7 305 78.4
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 3.2e-135 485.7 311 77.8
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 4.2e-135 485.3 308 80.2
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 5.5e-135 485.0 301 78.4
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 3.5e-134 482.3 302 77.5
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 4.6e-134 481.9 306 77.5
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 7.9e-134 481.1 306 76.8
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 1.8e-133 479.9 306 77.1
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 5.1e-133 478.4 306 77.1
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 6.7e-133 478.0 306 76.8
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 1.1e-132 477.2 290 81.4
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 5.7e-132 474.9 320 73.8
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 1.3e-131 473.8 329 72.6
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 3.7e-131 472.2 302 77.8
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 1.8e-130 469.9 306 76.5
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 2.4e-130 469.5 305 74.8
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 3.1e-130 469.2 304 74.7
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 3.1e-130 469.2 303 76.2
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 3.1e-130 469.2 305 74.4
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 2.6e-129 466.1 303 74.6
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 3.4e-129 465.7 303 74.3
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 4.5e-129 465.3 303 74.9
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.3e-128 463.8 312 72.1
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 2.9e-128 462.6 322 71.1
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 5.0e-128 461.8 305 73.4
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 6.5e-128 461.5 306 72.9
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.1e-127 460.7 302 75.8
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.9e-127 459.9 321 70.4
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 3.2e-127 459.1 298 76.2
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 3.2e-127 459.1 306 73.5
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 4.2e-127 458.8 306 72.2
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 4.2e-127 458.8 306 72.5
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 5.5e-127 458.4 304 73.0
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.2e-126 457.2 345 66.4
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 1.6e-126 456.8 303 75.2
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 2.1e-126 456.4 302 74.2
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 2.1e-126 456.4 274 81.4
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 6.1e-126 454.9 312 71.2
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 7.9e-126 454.5 302 74.2
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 1.0e-125 454.1 302 73.8
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 2.3e-125 453.0 303 71.9
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 5.1e-125 451.8 303 72.9
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 1.5e-124 450.3 307 71.0
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 1.5e-124 450.3 307 71.0
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 9.7e-124 447.6 307 73.3
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 9.7e-124 447.6 315 71.1
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 6.3e-123 444.9 405 59.3
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 6.3e-123 444.9 331 68.3
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 4.1e-122 442.2 303 72.3
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 5.9e-121 438.3 299 70.6
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 1.0e-120 437.6 305 70.5
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 1.3e-120 437.2 304 71.7
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 1.7e-120 436.8 309 70.2
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 3.8e-120 435.6 219 98.2
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 1.1e-119 434.1 312 68.3
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 1.1e-119 434.1 305 70.2
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 4.2e-119 432.2 305 72.1
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 5.9e-113 411.8 306 68.3
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 2.5e-111 406.4 276 70.3
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 1.0e-109 401.0 336 58.3
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 5.2e-109 398.7 275 71.6
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 5.2e-109 398.7 275 71.6
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 7.4e-108 394.8 306 67.3
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 1.5e-100 370.5 267 71.9
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 1.8e-98 363.6 284 61.6
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 1.6e-97 360.5 334 55.4
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 1.1e-95 354.4 341 54.5
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 1.4e-93 347.4 289 59.9
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 7.5e-92 341.7 291 56.0
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 2.4e-90 336.7 291 55.3
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 3.1e-90 336.3 291 54.6
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 5.4e-90 335.5 292 52.7
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 2.7e-89 333.2 218 71.6
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 5.9e-89 332.0 218 74.8
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 1.9e-87 327.0 292 52.7
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 5.6e-87 325.5 291 52.6
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 9.5e-87 324.7 292 52.1
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 2.8e-86 323.2 292 52.7
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 2.8e-86 323.2 292 52.1
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 4.7e-86 322.4 292 53.1
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 6.1e-86 322.0 297 50.5
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 8.0e-86 321.6 292 52.7
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.4e-85 320.9 292 52.7
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 1.4e-85 320.9 297 51.9
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 3.0e-85 319.7 296 52.0
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 8.9e-85 318.2 290 53.4
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.2e-84 317.8 292 53.1
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 1.2e-84 317.8 377 44.6
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.5e-84 317.4 292 51.7
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 2.0e-84 317.0 298 52.3
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 4.4e-84 315.8 297 51.5
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.2e-83 313.5 296 51.7
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 2.9e-83 313.2 292 52.7
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 3.7e-83 312.8 272 55.1
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 3.2e-82 309.7 298 50.3
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 9.2e-82 308.1 292 51.0
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 9.2e-82 308.1 292 51.0
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 2.7e-81 306.6 293 51.5
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 3.5e-81 306.2 303 49.2
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 3.5e-81 306.2 298 50.0
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 3.5e-81 306.2 292 51.4
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 3.5e-81 306.2 293 51.5
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 7.8e-81 305.1 293 51.9
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 7.8e-81 305.1 293 51.5
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 1.9e-79 300.4 293 50.5
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 4.7e-78 295.8 294 47.3
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 8.9e-77 291.6 298 48.0
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 1.1e-74 284.6 289 49.5
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 3.2e-74 283.1 272 50.0
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 1.5e-71 274.2 291 47.8
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 9.5e-71 271.6 277 48.0
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 2.0e-68 263.8 167 77.2
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 4.4e-68 262.7 291 51.9
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 1.7e-67 260.8 272 48.5
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 4.1e-66 256.1 349 40.1
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 1.1e-63 248.1 252 48.0
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 4.9e-59 232.6 198 63.1
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 1.1e-55 221.5 285 41.1
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.5e-55 220.3 219 50.7
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 2.0e-52 210.7 315 39.7
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 2.6e-52 210.3 184 60.3
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 2.2e-51 207.2 194 51.5
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 2.2e-51 207.2 194 51.5
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 5.1e-40 169.5 128 57.0
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 3.6e-38 163.3 128 55.5
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 3.6e-38 163.3 128 55.5
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 2.9e-35 153.7 148 52.0
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.1e-33 147.5 297 32.0
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.1e-31 141.7 85 82.4
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 1.9e-31 141.0 108 55.6
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 8.4e-27 125.6 149 47.7
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 3.5e-25 120.2 94 64.9
MCO10G201 Micromonas commoda HOM05D004218 ORTHO05D004938 1.8e-21 107.8 452 26.8
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 1.6e-14 84.7 57 73.7


User provided reference genes

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