Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G0085 Fragaria x ananassa HOM05D004311 ORTHO05D005145 0.0e+00 1133.2 579 100.0
FAN07G0445 Fragaria x ananassa HOM05D004311 ORTHO05D005145 6.9e-307 1056.6 582 94.8
FvH4_4g11290 Fragaria vesca HOM05D004311 ORTHO05D005145 2.8e-292 1008.1 579 91.2
RcHm_v2.0_Chr4g0407531 Rosa chinensis HOM05D004311 ORTHO05D005145 6.1e-162 575.1 336 88.1
FAN22G0235 Fragaria x ananassa HOM05D004311 ORTHO05D005820 8.9e-129 464.9 247 96.4
CiPaw.01G102900 Carya illinoinensis HOM05D004311 ORTHO05D005145 2.2e-119 433.7 563 49.6
Haze_00714 Corylus avellana HOM05D004311 ORTHO05D005145 2.1e-117 427.2 605 46.1
Cfa015780 Carpinus fangiana HOM05D004311 ORTHO05D005145 3.5e-117 426.4 476 52.1
QL10p045440 Quercus lobata HOM05D004311 ORTHO05D005145 4.6e-117 426.0 785 39.5
Thecc.04G184200 Theobroma cacao HOM05D004311 ORTHO05D005145 6.2e-114 415.6 497 49.7
Manes.11G116001 Manihot esculenta HOM05D004311 ORTHO05D005145 4.0e-113 412.9 561 47.4
Actinidia35905 Actinidia chinensis HOM05D004311 ORTHO05D005145 5.2e-113 412.5 502 48.0
Dinv44218 Davidia involucrata HOM05D004311 ORTHO05D005145 4.9e-111 406.0 484 50.6
GSVIVG01013563001 Vitis vinifera HOM05D004311 ORTHO05D005145 1.4e-110 404.4 480 49.6
Ciclev10019191m.g Citrus clementina HOM05D004311 ORTHO05D005145 1.1e-107 394.8 501 48.1
MD04G1038300 Malus domestica HOM05D004311 ORTHO05D005145 1.5e-107 394.4 301 71.1
Eucgr.A00251 Eucalyptus grandis HOM05D004311 ORTHO05D005145 6.2e-106 389.0 498 48.8
Potri.007G124150 Populus trichocarpa HOM05D004311 ORTHO05D005145 2.0e-104 384.0 569 43.9
Atru.chr5.2612 Acer truncatum HOM05D004311 ORTHO05D005145 3.4e-104 383.3 553 44.5
Gohir.D10G132100 Gossypium hirsutum HOM05D004311 ORTHO05D005145 4.4e-104 382.9 494 48.4
Gohir.A10G134400 Gossypium hirsutum HOM05D004311 ORTHO05D005145 4.9e-103 379.4 571 44.5
Gorai.011G145800 Gossypium raimondii HOM05D004311 ORTHO05D005145 4.9e-103 379.4 626 42.2
Duzib268G0197 Durio zibethinus HOM05D004311 ORTHO05D005145 6.4e-103 379.0 421 52.5
Atru.chr3.1596 Acer truncatum HOM05D004311 ORTHO05D005145 8.4e-103 378.6 491 48.3
Ca_11399_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 3.2e-102 376.7 517 46.6
Ca_11402_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 3.2e-102 376.7 517 46.6
Ca_29593_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 3.2e-102 376.7 517 46.6
CANSAT11G1749 Cannabis sativa HOM05D004311 ORTHO05D005145 2.1e-101 374.0 423 51.8
Rhsim09G0031800 Rhododendron simsii HOM05D004311 ORTHO05D005145 2.7e-101 373.6 601 40.9
Potri.017G036200 Populus trichocarpa HOM05D004311 ORTHO05D005145 6.0e-101 372.5 566 42.9
arahy.Tifrunner.gnm1.ann1.TTS68P Arachis hypogaea HOM05D004311 ORTHO05D005145 6.6e-100 369.0 498 47.8
Sabra17G0023900 Salix brachista HOM05D004311 ORTHO05D005145 8.7e-100 368.6 572 42.1
Glyma.20G245800 Glycine max HOM05D004311 ORTHO05D005145 2.5e-99 367.1 512 47.5
Lj5g0018220 Lotus japonicus HOM05D004311 ORTHO05D005145 5.6e-99 365.9 512 47.3
PGR083G0820 Punica granatum HOM05D004311 ORTHO05D005145 1.6e-98 364.4 576 44.1
Medtr1g116530 Medicago truncatula HOM05D004311 ORTHO05D005145 3.6e-98 363.2 505 46.5
arahy.Tifrunner.gnm1.ann1.D3CYL9 Arachis hypogaea HOM05D004311 ORTHO05D005145 6.2e-98 362.5 500 47.0
Lalb_Chr21g0307601 Lupinus albus HOM05D004311 ORTHO05D005145 8.1e-98 362.1 406 51.7
Phvul.007G004100 Phaseolus vulgaris HOM05D004311 ORTHO05D005145 1.2e-96 358.2 523 45.7
TWI34G1341 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 2.6e-96 357.1 494 44.1
Cc03_g13030 Coffea canephora HOM05D004311 ORTHO05D005145 1.9e-94 350.9 426 49.5
COL.COLO4_24387 Corchorus olitorius HOM05D004311 ORTHO05D005145 3.2e-94 350.1 453 48.1
Glyma.10G295800 Glycine max HOM05D004311 ORTHO05D005145 2.1e-93 347.4 516 45.3
CsaV3_4G003570 Cucumis sativus L. HOM05D004311 ORTHO05D005145 7.9e-93 345.5 490 44.5
Sopen09g036480 Solanum pennellii HOM05D004311 ORTHO05D005145 2.3e-92 344.0 527 43.1
Peaxi162Scf00319g00915 Petunia axillaris HOM05D004311 ORTHO05D005145 3.0e-92 343.6 455 46.2
VMungo0720G0448 Vigna mungo HOM05D004311 ORTHO05D005145 1.1e-91 341.7 510 44.3
Solyc09g098560.2 Solanum lycopersicum HOM05D004311 ORTHO05D005145 1.5e-91 341.3 525 43.0
Prupe.1G189100 Prunus persica HOM05D004311 ORTHO05D005145 9.6e-91 338.6 256 73.0
Hund12225 Selenicereus undatus HOM05D004311 ORTHO05D005145 1.6e-90 337.8 410 47.3
CAN.G710.65 Capsicum annuum HOM05D004311 ORTHO05D005145 1.8e-89 334.3 487 44.1
TPR.G10413 Trifolium pratense HOM05D004311 ORTHO05D005145 1.8e-89 334.3 499 45.5
Sed0012126 Sechium edule HOM05D004311 ORTHO05D005145 5.3e-89 332.8 541 42.3
MELO3C017696.2 Cucumis melo HOM05D004311 ORTHO05D005145 9.0e-89 332.0 408 48.3
Nitab4.5_0006710g0020 Nicotiana tabacum HOM05D004311 ORTHO05D005145 7.6e-88 328.9 484 44.0
vmacro00589 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 9.9e-88 328.6 335 54.6
Dinv22688 Davidia involucrata HOM05D004311 ORTHO05D005145 1.7e-87 327.8 430 47.0
THA.LOC104821356 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 2.9e-87 327.0 480 44.0
TAR375G1135 Trochodendron aralioides HOM05D004311 ORTHO05D005145 6.4e-87 325.9 571 38.7
EL10Ac3g06308 Beta vulgaris HOM05D004311 ORTHO05D005145 3.2e-86 323.6 470 42.8
MBI08_g33649_MAGBIO Magnolia biondii HOM05D004311 ORTHO05D005145 4.2e-86 323.2 429 46.2
Psat6g241440 Pisum sativum HOM05D004311 ORTHO05D005145 7.1e-86 322.4 499 42.5
Actinidia33018 Actinidia chinensis HOM05D004311 ORTHO05D005145 4.6e-85 319.7 455 43.5
Lj6A60T46 Lonicera japonica HOM05D004311 ORTHO05D005145 6.0e-85 319.3 293 59.0
Sc19g0002150 Simmondsia chinensis HOM05D004311 ORTHO05D005145 1.1e-83 315.1 485 41.9
Nn2g11494 Nelumbo nucifera HOM05D004311 ORTHO05D005145 1.8e-81 307.8 558 38.5
MSTRG.20570 Avicennia marina HOM05D004311 ORTHO05D005145 1.2e-80 305.1 512 42.4
Nitab4.5_0000526g0040 Nicotiana tabacum HOM05D004311 ORTHO05D005145 1.2e-80 305.1 302 56.3
HanXRQChr07g0186701 Helianthus annuus HOM05D004311 ORTHO05D005145 3.4e-80 303.5 430 43.0
SGA_v2.0_scaffold12G06156 Striga asiatica HOM05D004311 ORTHO05D005145 2.5e-78 297.4 465 40.6
AUR62030033 Chenopodium quinoa HOM05D004311 ORTHO05D005145 3.5e-77 293.5 517 38.1
SalBow3G3821 Salvia bowleyana HOM05D004311 ORTHO05D005145 3.5e-77 293.5 505 40.0
Sabra17G0023400 Salix brachista HOM05D004311 ORTHO05D005145 1.3e-76 291.6 343 49.6
DCAR_028443 Daucus carota HOM05D004311 ORTHO05D005145 1.8e-76 291.2 476 41.0
AUR62002610 Chenopodium quinoa HOM05D004311 ORTHO05D005145 4.3e-75 286.6 645 34.4
ClCG07G015850 Citrullus lanatus HOM05D004311 ORTHO05D005145 7.4e-75 285.8 288 55.9
Lsat_1_v5_gn_6_54900 Lactuca sativa HOM05D004311 ORTHO05D005145 1.6e-74 284.6 500 39.4
CDE09G0340 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 3.4e-72 276.9 451 39.7
Aqoxy5G04052 Aquilegia oxysepala HOM05D004311 ORTHO05D005145 4.5e-72 276.6 471 41.2
Migut.G01038 Erythranthe guttata HOM05D004311 ORTHO05D005145 2.5e-70 270.8 442 40.0
CDE02G0781 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 2.1e-69 267.7 447 40.3
unitig_8.g3035 Utricularia gibba HOM05D004311 ORTHO05D005145 4.6e-69 266.5 446 38.8
Nitab4.5_0004962g0030 Nicotiana tabacum HOM05D004311 ORTHO05D005145 1.0e-68 265.4 428 41.6
RcHm_v2.0_Chr4g0407521 Rosa chinensis HOM05D004311 ORTHO05D005145 3.9e-68 263.5 281 63.0
HPP92_009171 Vanilla planifolia HOM05D004311 ORTHO05D005145 3.7e-66 256.9 425 38.1
BcaC02g07234 Brassica carinata HOM05D004311 ORTHO05D005145 4.8e-66 256.5 467 38.3
C04p69770 Brassica napus HOM05D004311 ORTHO05D005145 3.1e-65 253.8 467 38.3
Prupe.1G188800 Prunus persica HOM05D004311 ORTHO05D005145 3.1e-65 253.8 298 51.7
A05p03080 Brassica napus HOM05D004311 ORTHO05D005145 1.7e-63 248.1 492 36.0
BraA05t19299Z Brassica rapa HOM05D004311 ORTHO05D005145 5.0e-63 246.5 594 33.3
Sp4g24640 Schrenkiella parvula HOM05D004311 ORTHO05D005145 8.5e-63 245.7 471 36.7
Aa31LG2G1780 Aethionema arabicum HOM05D004311 ORTHO05D005145 5.5e-62 243.0 492 34.8
BcaNung03232 Brassica carinata HOM05D004311 ORTHO05D005145 7.2e-62 242.7 648 32.4
TWI60G0507 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 2.7e-61 240.7 372 40.3
ATR0743G139 Amborella trichopoda HOM05D004311 ORTHO05D005145 3.6e-61 240.4 427 36.8
Zm00001eb248350 Zea mays HOM05D004311 ORTHO05D005145 1.4e-60 238.4 424 38.4
PSO675G5961 Papaver somniferum HOM05D004311 ORTHO05D005145 3.9e-60 236.9 452 36.3
Carub.0004s2496 Capsella rubella HOM05D004311 ORTHO05D005145 5.1e-60 236.5 564 32.8
SHI06503 Sapria himalayana HOM05D004311 ORTHO05D005145 5.1e-60 236.5 327 44.6
BcaC02g12437 Brassica carinata HOM05D004311 ORTHO05D005145 5.7e-59 233.0 602 32.2
Cpa.g.sc73.18 Carica papaya HOM05D004311 ORTHO05D005145 4.8e-58 229.9 227 56.8
BolC4t22005H Brassica oleracea HOM05D004311 ORTHO05D005145 1.8e-57 228.0 593 30.5
C04p03710 Brassica napus HOM05D004311 ORTHO05D005145 6.9e-57 226.1 602 30.6
Os11g0293300 Oryza sativa ssp. japonica HOM05D004311 ORTHO05D005145 3.4e-56 223.8 422 36.5
PSO017G7323 Papaver somniferum HOM05D004311 ORTHO05D005145 3.4e-56 223.8 438 36.1
Oeu007717.1 Olea europaea HOM05D004311 ORTHO05D005145 3.8e-55 220.3 294 42.9
AT1G54380 Arabidopsis thaliana HOM05D004311 ORTHO05D005145 5.0e-55 219.9 599 32.2
CARHR055450 Cardamine hirsuta HOM05D004311 ORTHO05D005145 6.5e-55 219.5 568 33.3
Lalb_Chr02g0144311 Lupinus albus HOM05D004311 ORTHO05D005145 2.7e-53 214.2 321 44.9
SEGI_09077 Sequoiadendron giganteum HOM05D004311 ORTHO05D005145 1.1e-51 208.8 312 40.7
Duzib151G0942 Durio zibethinus HOM05D004311 ORTHO05D005145 1.2e-48 198.7 269 45.7
Pp3c18_5230 Physcomitrium patens HOM05D004311 ORTHO05D005145 3.2e-46 190.7 369 37.7
SMO351G0426 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 1.5e-43 181.8 284 40.1
SMO273G0052 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 1.8e-41 174.9 289 40.5
AagrBONN_evm.TU.Sc2ySwM_228.1282 Anthoceros agrestis HOM05D004311 ORTHO05D005145 4.5e-40 170.2 537 28.3
CBR_g48670 Chara braunii HOM05D004311 ORTHO05D005145 1.0e-39 169.1 403 30.8
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 1.0e-39 169.1 187 55.1
SMO174G0256 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 1.8e-36 158.3 289 36.7
BcaB06g29252 Brassica carinata HOM05D004311 ORTHO05D005145 1.3e-34 152.1 549 27.3
BcaNung05216 Brassica carinata HOM05D004311 ORTHO05D005145 2.8e-29 134.4 564 26.2
Thhalv10017985m.g Eutrema salsugineum HOM05D004311 ORTHO05D005145 2.3e-28 131.3 217 40.6
MD04G1038400 Malus domestica HOM05D004311 ORTHO05D005145 2.2e-26 124.8 399 34.8
Mapoly0064s0042 Marchantia polymorpha HOM05D004311 ORTHO05D005145 1.2e-24 119.0 261 34.9
TWI60G1520 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 2.7e-24 117.9 128 53.1
MCO03G002 Micromonas commoda HOM05D004311 ORTHO05D005145 1.8e-17 95.1 275 30.2
CANSAT78G0609 Cannabis sativa HOM05D004311 ORTHO05D005145 2.3e-15 88.2 153 41.2
Nitab4.5_0001049g0080 Nicotiana tabacum HOM05D004311 ORTHO05D005145 3.0e-15 87.8 285 30.2
BcaNung00544 Brassica carinata HOM05D004311 ORTHO05D005145 3.9e-15 87.4 89 50.6
CANSAT01G2758 Cannabis sativa HOM05D004311 ORTHO05D005145 2.5e-14 84.7 276 31.2
CSS0021437 Camellia sinensis var. sinensis HOM05D004311 ORTHO05D005145 3.3e-14 84.3 182 34.1
vmacro00590 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 2.1e-13 81.6 181 37.6
Oeu050349.1 Olea europaea HOM05D004311 ORTHO05D005145 2.3e-12 78.2 144 37.5
BolC4t28477H Brassica oleracea HOM05D004311 ORTHO05D005145 2.2e-10 71.6 216 29.6
Sabra07G0100500 Salix brachista HOM05D004311 ORTHO05D005145 2.9e-10 71.2 222 31.1
Lj6A60T47 Lonicera japonica HOM05D004311 ORTHO05D005145 1.1e-09 69.3 113 39.8
Cre09.g405650 Chlamydomonas reinhardtii HOM05D004311 ORTHO05D005145 2.4e-09 68.2 71 50.7
Hma1.2p1_0429F.1_g151120 Hydrangea macrophylla HOM05D004311 ORTHO05D005145 2.4e-09 68.2 115 39.1
SGA_v2.0_scaffold290G47298 Striga asiatica HOM05D002786 ORTHO05D003493 2.4e-09 68.2 61 54.1
TAR362G0891 Trochodendron aralioides HOM05D015611 ORTHO05D005145 3.2e-09 67.8 110 40.0
TAR374G0693 Trochodendron aralioides HOM05D015611 ORTHO05D005145 1.2e-08 65.9 63 50.8
TAR374G0043 Trochodendron aralioides HOM05D004311 ORTHO05D005145 4.6e-08 63.9 61 54.1
Lalb_Chr02g0144301 Lupinus albus HOM05D004311 ORTHO05D005145 7.8e-08 63.2 140 36.4
CARHR137590 Cardamine hirsuta HOM05D004311 ORTHO05D005145 6.6e-07 60.1 47 63.8
SEGI_08315 Sequoiadendron giganteum HOM05D004311 ORTHO05D005145 8.6e-07 59.7 67 47.8
MD13G1258700 Malus domestica HOM05D004311 ORTHO05D005145 1.1e-06 59.3 42 69.0
PSO384G3421 Papaver somniferum HOM05D015611 ORTHO05D026019 1.9e-06 58.5 62 43.5
PSO170G3519 Papaver somniferum HOM05D015611 ORTHO05D026019 5.6e-06 57.0 52 48.1
PSO339G2231 Papaver somniferum HOM05D015611 ORTHO05D026019 5.6e-06 57.0 62 40.3


User provided reference genes

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