Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G0078 Fragaria x ananassa HOM05D003646 ORTHO05D199172 6.4e-54 213.8 104 100.0
FAN07G2878 Fragaria x ananassa HOM05D003646 ORTHO05D201260 2.5e-21 105.5 100 59.0
RcHm_v2.0_Chr4g0430531 Rosa chinensis HOM05D003646 ORTHO05D004503 1.3e-19 99.8 96 54.2
FvH4_4g23890 Fragaria vesca HOM05D003646 ORTHO05D004503 2.9e-14 82.0 47 80.9
FAN12G1917 Fragaria x ananassa HOM05D003646 ORTHO05D004503 2.9e-14 82.0 47 80.9
FAN17G0152 Fragaria x ananassa HOM05D003646 ORTHO05D004503 2.9e-14 82.0 47 80.9
FAN07G1027 Fragaria x ananassa HOM05D003646 ORTHO05D004503 6.5e-14 80.9 47 78.7
Prupe.1G227000 Prunus persica HOM05D003646 ORTHO05D004503 1.8e-11 72.8 48 72.9
QL03p053648 Quercus lobata HOM05D003646 ORTHO05D004503 1.1e-10 70.1 47 72.3
MD16G1118100 Malus domestica HOM05D003646 ORTHO05D004503 2.0e-10 69.3 48 70.8
SHI03945 Sapria himalayana HOM05D000105 ORTHO05D000023 3.3e-10 68.6 48 62.5
Sopen02g038740 Solanum pennellii HOM05D003646 ORTHO05D004503 4.3e-10 68.2 47 68.1
PGSC0003DMG400020212 Solanum tuberosum HOM05D003646 ORTHO05D004503 4.3e-10 68.2 47 68.1
Solyc02g094120.3 Solanum lycopersicum HOM05D003646 ORTHO05D004503 9.7e-10 67.0 47 66.0
CAN.G473.96 Capsicum annuum HOM05D003646 ORTHO05D004503 1.3e-09 66.6 47 68.1
Actinidia04439 Actinidia chinensis HOM05D003646 ORTHO05D004503 2.8e-09 65.5 47 68.1
MBI07_g34622_MAGBIO Magnolia biondii HOM05D003646 ORTHO05D004503 2.8e-09 65.5 47 70.2
Nitab4.5_0002050g0110 Nicotiana tabacum HOM05D003646 ORTHO05D004503 2.8e-09 65.5 47 61.7
Nn3g16489 Nelumbo nucifera HOM05D003646 ORTHO05D004503 3.7e-09 65.1 48 66.7
PGR083G0278 Punica granatum HOM05D003646 ORTHO05D004503 4.8e-09 64.7 47 66.0
Nitab4.5_0011569g0050 Nicotiana tabacum HOM05D003646 ORTHO05D004503 6.3e-09 64.3 47 63.8
Peaxi162Scf00420g00552 Petunia axillaris HOM05D003646 ORTHO05D004503 6.3e-09 64.3 47 61.7
Peaxi162Scf00692g00518 Petunia axillaris HOM05D003646 ORTHO05D004503 8.2e-09 63.9 46 63.0
Actinidia30882 Actinidia chinensis HOM05D003646 ORTHO05D004503 1.4e-08 63.2 47 63.8
CiPaw.03G055000 Carya illinoinensis HOM05D003646 ORTHO05D004503 1.4e-08 63.2 47 63.8
HanXRQChr07g0198211 Helianthus annuus HOM05D003646 ORTHO05D004503 1.4e-08 63.2 44 70.5
Lj7A608G42 Lonicera japonica HOM05D003646 ORTHO05D004503 1.4e-08 63.2 44 68.2
TAR622G1416 Trochodendron aralioides HOM05D003646 ORTHO05D004503 1.4e-08 63.2 47 63.8
Haze_14869 Corylus avellana HOM05D003646 ORTHO05D004503 2.4e-08 62.4 47 63.8
PSO017G2867 Papaver somniferum HOM05D003646 ORTHO05D004503 2.4e-08 62.4 46 65.2
PSO478G1257 Papaver somniferum HOM05D003646 ORTHO05D004503 2.4e-08 62.4 46 65.2
QL02p071550 Quercus lobata HOM05D003646 ORTHO05D004503 2.4e-08 62.4 43 72.1
Aqoxy5G03396 Aquilegia oxysepala HOM05D003646 ORTHO05D004503 3.1e-08 62.0 47 61.7
Cpa.g.sc171.20 Carica papaya HOM05D003646 ORTHO05D004503 3.1e-08 62.0 47 66.0
DCAR_021791 Daucus carota HOM05D003646 ORTHO05D004503 3.1e-08 62.0 46 65.2
vmacro18339 Vaccinium macrocarpon HOM05D003646 ORTHO05D004503 3.1e-08 62.0 47 61.7
CSS0046571 Camellia sinensis var. sinensis HOM05D003646 ORTHO05D004503 4.1e-08 61.6 47 63.8
AUR62017819 Chenopodium quinoa HOM05D003646 ORTHO05D004503 4.1e-08 61.6 44 70.5
Duzib147G0655 Durio zibethinus HOM05D003646 ORTHO05D004503 4.1e-08 61.6 47 61.7
Hma1.2p1_0279F.1_g112713 Hydrangea macrophylla HOM05D003646 ORTHO05D004503 4.1e-08 61.6 47 63.8
Hma1.2p1_2636F.1_g325820 Hydrangea macrophylla HOM05D003646 ORTHO05D004503 4.1e-08 61.6 47 63.8
Rhsim08G0043500 Rhododendron simsii HOM05D003646 ORTHO05D004503 4.1e-08 61.6 47 61.7
COL.COLO4_17205 Corchorus olitorius HOM05D003646 ORTHO05D004503 5.3e-08 61.2 47 61.7
HanXRQChr14g0450741 Helianthus annuus HOM05D003646 ORTHO05D004503 5.3e-08 61.2 44 65.9
Lj1g0013072 Lotus japonicus HOM05D003646 ORTHO05D004503 5.3e-08 61.2 49 59.2
SMO145G0143 Selaginella moellendorffii HOM05D003646 ORTHO05D004503 5.3e-08 61.2 51 56.9
EL10Ac6g15361 Beta vulgaris HOM05D003646 ORTHO05D004503 6.9e-08 60.8 43 72.1
Migut.F00068 Erythranthe guttata HOM05D003646 ORTHO05D004503 6.9e-08 60.8 59 50.8
Lsat_1_v5_gn_2_92941 Lactuca sativa HOM05D003646 ORTHO05D004503 6.9e-08 60.8 44 65.9
Os08g0530400 Oryza sativa ssp. japonica HOM05D003646 ORTHO05D004503 6.9e-08 60.8 43 67.4
Rhsim12G0099200 Rhododendron simsii HOM05D003646 ORTHO05D004503 6.9e-08 60.8 44 68.2
Sc03g0006580 Simmondsia chinensis HOM05D003646 ORTHO05D004503 6.9e-08 60.8 45 66.7
Atru.chr6.2563 Acer truncatum HOM05D003646 ORTHO05D004503 9.1e-08 60.5 47 63.8
AUR62003508 Chenopodium quinoa HOM05D003646 ORTHO05D004503 9.1e-08 60.5 53 58.5
Psat3g164760 Pisum sativum HOM05D003646 ORTHO05D004503 9.1e-08 60.5 44 63.6
VMungo0464G0965 Vigna mungo HOM05D003646 ORTHO05D004503 9.1e-08 60.5 47 61.7
Zm00001eb129230 Zea mays HOM05D003646 ORTHO05D004503 9.1e-08 60.5 47 63.8
Ah.03g147470 Amaranthus hybridus HOM05D003646 ORTHO05D004503 1.2e-07 60.1 43 72.1
Ca_26781_v3 Cicer arietinum L. HOM05D003646 ORTHO05D004503 1.2e-07 60.1 44 63.6
Psat1g086840 Pisum sativum HOM05D003646 ORTHO05D004503 1.2e-07 60.1 47 57.4
CSS0048682 Camellia sinensis var. sinensis HOM05D005629 ORTHO05D004503 1.5e-07 59.7 51 56.9
ClCG03G002950 Citrullus lanatus HOM05D003646 ORTHO05D004503 1.5e-07 59.7 47 66.0
CsaV3_2G034140 Cucumis sativus L. HOM05D003646 ORTHO05D004503 1.5e-07 59.7 47 63.8
Gohir.D09G036700 Gossypium hirsutum HOM05D003646 ORTHO05D004503 1.5e-07 59.7 47 63.8
Gorai.006G041700 Gossypium raimondii HOM05D003646 ORTHO05D004503 1.5e-07 59.7 47 63.8
SEGI_30278 Sequoiadendron giganteum HOM05D003646 ORTHO05D004503 1.5e-07 59.7 43 67.4
Thecc.04G035300 Theobroma cacao HOM05D003646 ORTHO05D004503 1.5e-07 59.7 47 61.7
ECA238G3019 Erigeron canadensis HOM05D003646 ORTHO05D004503 2.0e-07 59.3 44 63.6
Manes.17G103400 Manihot esculenta HOM05D003646 ORTHO05D004503 2.0e-07 59.3 47 61.7
SGA_v2.0_scaffold154G37169 Striga asiatica HOM05D003646 ORTHO05D004503 2.0e-07 59.3 47 59.6
TWI56G0364 Tripterygium wilfordii HOM05D003646 ORTHO05D004503 2.0e-07 59.3 47 57.4
Ca_04435_v3 Cicer arietinum L. HOM05D003646 ORTHO05D004503 2.6e-07 58.9 47 59.6
MD09G1011300 Malus domestica HOM05D003646 ORTHO05D004503 2.6e-07 58.9 47 57.4
Prupe.3G305700 Prunus persica HOM05D003646 ORTHO05D004503 2.6e-07 58.9 47 57.4
SalBow4G1548 Salvia bowleyana HOM05D003646 ORTHO05D004503 2.6e-07 58.9 47 61.7
Zm00001eb036560 Zea mays HOM05D003646 ORTHO05D004503 2.6e-07 58.9 43 65.1
ATR0561G114 Amborella trichopoda HOM05D003646 ORTHO05D004503 3.4e-07 58.5 47 57.4
Cfa007232 Carpinus fangiana HOM05D003646 ORTHO05D004503 3.4e-07 58.5 47 59.6
CDE05G3065 Ceratophyllum demersum HOM05D003646 ORTHO05D004503 3.4e-07 58.5 44 61.4
MELO3C008194.2 Cucumis melo HOM05D003646 ORTHO05D004503 3.4e-07 58.5 47 63.8
Gohir.A09G035500 Gossypium hirsutum HOM05D003646 ORTHO05D004503 3.4e-07 58.5 47 61.7
Gorai.001G270800 Gossypium raimondii HOM05D003646 ORTHO05D004503 3.4e-07 58.5 59 50.8
Manes.15G160200 Manihot esculenta HOM05D003646 ORTHO05D004503 3.4e-07 58.5 47 57.4
Peaxi162Scf01327g00121 Petunia axillaris HOM05D003646 ORTHO05D004503 3.4e-07 58.5 47 57.4
Potri.001G330900 Populus trichocarpa HOM05D003646 ORTHO05D004503 3.4e-07 58.5 47 59.6
TAR374G0357 Trochodendron aralioides HOM05D003646 ORTHO05D004503 3.4e-07 58.5 44 61.4
CSS0009384 Camellia sinensis var. sinensis HOM05D003646 ORTHO05D004503 4.5e-07 58.2 35 71.4
CSS0031819 Camellia sinensis var. sinensis HOM05D003646 ORTHO05D004503 4.5e-07 58.2 35 71.4
CANSAT64G2942 Cannabis sativa HOM05D003646 ORTHO05D004503 4.5e-07 58.2 44 63.6
Lalb_Chr21g0317451 Lupinus albus HOM05D003646 ORTHO05D004503 4.5e-07 58.2 47 61.7
Os12g0442800 Oryza sativa ssp. japonica HOM05D003646 ORTHO05D004503 4.5e-07 58.2 47 63.8
Phvul.004G054200 Phaseolus vulgaris HOM05D003646 ORTHO05D004503 4.5e-07 58.2 47 59.6
GSVIVG01033099001 Vitis vinifera HOM05D003646 ORTHO05D004503 4.5e-07 58.2 44 61.4
Migut.K01461 Erythranthe guttata HOM05D003646 ORTHO05D004503 5.9e-07 57.8 45 57.8
Gohir.A07G227900 Gossypium hirsutum HOM05D003646 ORTHO05D004503 5.9e-07 57.8 46 60.9
MSTRG.24091 Avicennia marina HOM05D003646 ORTHO05D004503 7.7e-07 57.4 47 59.6
Duzib187G0941 Durio zibethinus HOM05D003646 ORTHO05D004503 7.7e-07 57.4 47 57.4
Medtr7g033410 Medicago truncatula HOM05D003646 ORTHO05D004503 7.7e-07 57.4 44 61.4
TPR.G16204 Trifolium pratense HOM05D003646 ORTHO05D004503 7.7e-07 57.4 47 57.4
HPP92_007003 Vanilla planifolia HOM05D003646 ORTHO05D004503 7.7e-07 57.4 44 65.9
CDE02G1734 Ceratophyllum demersum HOM05D003646 ORTHO05D004503 1.0e-06 57.0 44 61.4
Gohir.D07G235000 Gossypium hirsutum HOM05D003646 ORTHO05D004503 1.0e-06 57.0 46 60.9
Sabra16G0211900 Salix brachista HOM05D003646 ORTHO05D004503 1.0e-06 57.0 47 57.4
SalBow7G3637 Salvia bowleyana HOM05D003646 ORTHO05D004503 1.0e-06 57.0 47 63.8
TWI36G1744 Tripterygium wilfordii HOM05D003646 ORTHO05D004503 1.0e-06 57.0 47 57.4
Cc07_g00790 Coffea canephora HOM05D003646 ORTHO05D004503 1.3e-06 56.6 34 73.5
Sed0021199 Sechium edule HOM05D003646 ORTHO05D004503 1.3e-06 56.6 47 61.7
arahy.Tifrunner.gnm1.ann1.QX8KZL Arachis hypogaea HOM05D000877 ORTHO05D012137 1.7e-06 56.2 45 60.0
Ciclev10015526m.g Citrus clementina HOM05D003646 ORTHO05D004503 1.7e-06 56.2 47 61.7
Lj2g0025838 Lotus japonicus HOM05D003646 ORTHO05D004503 1.7e-06 56.2 47 55.3
SGA_v2.0_scaffold253G45201 Striga asiatica HOM05D003646 ORTHO05D004503 1.7e-06 56.2 47 59.6
arahy.Tifrunner.gnm1.ann1.415AAL Arachis hypogaea HOM05D003646 ORTHO05D004503 2.2e-06 55.8 43 65.1
arahy.Tifrunner.gnm1.ann1.ZHHZ35 Arachis hypogaea HOM05D003646 ORTHO05D004503 2.2e-06 55.8 43 65.1
RcHm_v2.0_Chr2g0175501 Rosa chinensis HOM05D003646 ORTHO05D004503 2.2e-06 55.8 45 60.0
Hund30535 Selenicereus undatus HOM05D003646 ORTHO05D004503 2.2e-06 55.8 46 58.7
Hund30536 Selenicereus undatus HOM05D003646 ORTHO05D004503 2.2e-06 55.8 46 58.7
Glyma.19G071800 Glycine max HOM05D003646 ORTHO05D004503 2.9e-06 55.5 47 57.4
Eucgr.J02338 Eucalyptus grandis HOM05D003646 ORTHO05D004503 5.0e-06 54.7 34 70.6
unitig_578.g15929 Utricularia gibba HOM05D003646 ORTHO05D004503 5.0e-06 54.7 47 57.4
Aa31LG5G11030 Aethionema arabicum HOM05D003646 ORTHO05D004503 6.5e-06 54.3 34 73.5
BcaC05g25479 Brassica carinata HOM05D003646 ORTHO05D004503 6.5e-06 54.3 47 55.3
Lalb_Chr14g0363371 Lupinus albus HOM05D003646 ORTHO05D004503 6.5e-06 54.3 43 58.1


User provided reference genes

Program Settings