Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G0071 Fragaria x ananassa HOM05D005029 ORTHO05D006052 4.1e-162 574.7 300 100.0
FvH4_4g07340 Fragaria vesca HOM05D005029 ORTHO05D006052 1.9e-143 512.7 302 92.1
FAN12G1304 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.2e-142 510.0 300 92.0
FAN22G0020 Fragaria x ananassa HOM05D005029 ORTHO05D006052 4.2e-130 468.4 300 86.7
FAN07G2409 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.3e-128 463.4 277 86.6
RcHm_v2.0_Chr4g0399711 Rosa chinensis HOM05D005029 ORTHO05D006052 2.5e-127 459.1 300 85.3
Prupe.1G076300 Prunus persica HOM05D005029 ORTHO05D006052 2.7e-97 359.4 307 67.8
MD16G1249500 Malus domestica HOM05D005029 ORTHO05D006052 4.2e-90 335.5 306 64.7
Dinv41171 Davidia involucrata HOM05D005029 ORTHO05D006052 5.9e-84 315.1 300 59.3
Gohir.D13G213100 Gossypium hirsutum HOM05D005029 ORTHO05D006052 2.5e-82 309.7 314 56.7
Gorai.013G243400 Gossypium raimondii HOM05D005029 ORTHO05D006052 2.5e-82 309.7 314 56.7
Gohir.A13G208700 Gossypium hirsutum HOM05D005029 ORTHO05D006052 1.8e-80 303.5 308 56.8
COL.COLO4_08419 Corchorus olitorius HOM05D005029 ORTHO05D006052 2.3e-80 303.1 285 58.9
Haze_22015 Corylus avellana HOM05D005029 ORTHO05D006052 2.6e-79 299.7 313 56.9
Duzib170G0048 Durio zibethinus HOM05D005029 ORTHO05D006052 2.6e-79 299.7 311 55.6
Cpa.g.c27842.2 Carica papaya HOM05D005029 ORTHO05D006052 7.5e-79 298.1 294 59.5
Thecc.09G185600 Theobroma cacao HOM05D005029 ORTHO05D006052 2.8e-78 296.2 309 55.7
Cfa013448 Carpinus fangiana HOM05D005029 ORTHO05D006052 8.2e-78 294.7 313 56.5
CiPaw.08G032800 Carya illinoinensis HOM05D005029 ORTHO05D006052 1.8e-77 293.5 301 54.8
Duzib150G1033 Durio zibethinus HOM05D005029 ORTHO05D006052 2.4e-77 293.1 303 55.8
CANSAT11G1104 Cannabis sativa HOM05D005029 ORTHO05D006052 7.0e-77 291.6 308 55.8
Manes.06G020200 Manihot esculenta HOM05D005029 ORTHO05D006052 5.9e-76 288.5 300 56.7
Actinidia01279 Actinidia chinensis HOM05D005029 ORTHO05D006052 4.2e-74 282.3 310 57.1
VMungo1309G1415 Vigna mungo HOM05D005029 ORTHO05D006052 9.4e-74 281.2 303 53.8
CiPaw.07G196600 Carya illinoinensis HOM05D005029 ORTHO05D006052 2.7e-73 279.6 303 53.1
EL10Ac8g18332 Beta vulgaris HOM05D005029 ORTHO05D006052 1.0e-72 277.7 304 53.0
AUR62021347 Chenopodium quinoa HOM05D005029 ORTHO05D006052 1.4e-72 277.3 303 54.8
AUR62033261 Chenopodium quinoa HOM05D005029 ORTHO05D006052 1.4e-72 277.3 304 55.9
TAR383G0036 Trochodendron aralioides HOM05D005029 ORTHO05D006052 6.8e-72 275.0 306 53.6
Nitab4.5_0000617g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 8.8e-72 274.6 302 55.3
MSTRG.26542 Avicennia marina HOM05D005029 ORTHO05D006052 1.5e-71 273.9 315 51.7
TWI34G0612 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 1.5e-71 273.9 308 53.9
Potri.006G075900 Populus trichocarpa HOM05D005029 ORTHO05D006052 2.0e-71 273.5 312 56.4
THA.LOC104803957 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 3.4e-71 272.7 298 55.7
THA.LOC104803983 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 3.4e-71 272.7 298 55.7
Medtr2g037940 Medicago truncatula HOM05D005029 ORTHO05D006052 4.4e-71 272.3 299 52.5
TAR626G1810 Trochodendron aralioides HOM05D005029 ORTHO05D006052 4.4e-71 272.3 306 53.9
CARHR237880 Cardamine hirsuta HOM05D005029 ORTHO05D006052 7.5e-71 271.6 301 56.1
Cc00_g10760 Coffea canephora HOM05D005029 ORTHO05D006052 7.5e-71 271.6 294 56.5
TWI32G0396 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 1.3e-70 270.8 305 54.8
Phvul.009G236500 Phaseolus vulgaris HOM05D005029 ORTHO05D006052 1.7e-70 270.4 300 52.3
Glyma.09G059300 Glycine max HOM05D005029 ORTHO05D006052 2.2e-70 270.0 303 52.1
Glyma.15G165600 Glycine max HOM05D005029 ORTHO05D006052 6.3e-70 268.5 286 55.2
Lj6g0016757 Lotus japonicus HOM05D005029 ORTHO05D006052 1.8e-69 266.9 300 55.3
Ciclev10009010m.g Citrus clementina HOM05D005029 ORTHO05D006052 2.4e-69 266.5 296 54.7
Thhalv10025919m.g Eutrema salsugineum HOM05D005029 ORTHO05D006052 4.1e-69 265.8 294 54.8
AL7G22280 Arabidopsis lyrata HOM05D005029 ORTHO05D006052 5.4e-69 265.4 308 53.6
Lalb_Chr11g0074801 Lupinus albus HOM05D005029 ORTHO05D006052 5.4e-69 265.4 299 54.2
Peaxi162Scf01600g00016 Petunia axillaris HOM05D005029 ORTHO05D006052 2.7e-68 263.1 298 55.4
QL02p046501 Quercus lobata HOM05D005029 ORTHO05D006052 3.5e-68 262.7 404 43.6
Sabra06G0056600 Salix brachista HOM05D005029 ORTHO05D006052 4.5e-68 262.3 318 52.5
Hund26310 Selenicereus undatus HOM05D005029 ORTHO05D006052 7.7e-68 261.5 305 52.1
Nn7g36649 Nelumbo nucifera HOM05D005029 ORTHO05D006052 1.0e-67 261.2 308 50.3
Carub.0007s1068 Capsella rubella HOM05D005029 ORTHO05D006052 1.3e-67 260.8 306 53.3
Lsat_1_v5_gn_3_137280 Lactuca sativa HOM05D005029 ORTHO05D006052 1.3e-67 260.8 270 54.1
Potri.018G143000 Populus trichocarpa HOM05D005029 ORTHO05D006052 1.7e-67 260.4 304 51.0
Eucgr.C00120 Eucalyptus grandis HOM05D005029 ORTHO05D006052 2.2e-67 260.0 295 52.9
Nitab4.5_0008862g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 2.2e-67 260.0 302 55.3
Solyc07g008780.3 Solanum lycopersicum HOM05D005029 ORTHO05D006052 2.9e-67 259.6 307 54.1
Dinv25437 Davidia involucrata HOM05D005029 ORTHO05D006052 5.0e-67 258.8 273 54.9
AT4G29960 Arabidopsis thaliana HOM05D005029 ORTHO05D006052 1.1e-66 257.7 302 53.0
Sopen07g004720 Solanum pennellii HOM05D005029 ORTHO05D006052 1.1e-66 257.7 298 55.0
PGSC0003DMG400028729 Solanum tuberosum HOM05D005029 ORTHO05D006052 1.5e-66 257.3 307 54.1
MBI19_g21652_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 1.9e-66 256.9 293 51.5
GSVIVG01010867001 Vitis vinifera HOM05D005029 ORTHO05D006052 2.5e-66 256.5 303 52.8
BolC3t21207H Brassica oleracea HOM05D005029 ORTHO05D006052 3.2e-66 256.1 288 54.9
HanXRQChr13g0426591 Helianthus annuus HOM05D005029 ORTHO05D006052 3.2e-66 256.1 275 54.2
MBI13_g01742_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 3.2e-66 256.1 305 50.8
Ca_02102_v3 Cicer arietinum L. HOM05D005029 ORTHO05D006052 5.5e-66 255.4 296 54.1
DCAR_030818 Daucus carota HOM05D005029 ORTHO05D006052 1.2e-65 254.2 288 52.8
Sabra18G0116800 Salix brachista HOM05D005029 ORTHO05D006052 1.2e-65 254.2 305 49.2
Sp7g27770 Schrenkiella parvula HOM05D005029 ORTHO05D006052 3.6e-65 252.7 290 52.1
Ah.14g083530 Amaranthus hybridus HOM05D005029 ORTHO05D006052 6.1e-65 251.9 308 52.3
Psat1g145480 Pisum sativum HOM05D005029 ORTHO05D006052 1.0e-64 251.1 274 52.6
TPR.G7936 Trifolium pratense HOM05D005029 ORTHO05D006052 2.3e-64 250.0 303 53.1
Atru.chr7.763 Acer truncatum HOM05D005029 ORTHO05D006052 4.0e-64 249.2 304 51.6
Atru.chr7.783 Acer truncatum HOM05D005029 ORTHO05D006052 4.0e-64 249.2 304 51.6
Ah.09g230060 Amaranthus hybridus HOM05D005029 ORTHO05D006052 5.2e-64 248.8 311 50.2
CsaV3_1G031840 Cucumis sativus L. HOM05D005029 ORTHO05D006052 6.8e-64 248.4 267 53.9
BcaC01g01206 Brassica carinata HOM05D005029 ORTHO05D006052 1.2e-63 247.7 291 54.0
Aa31LG2G20590 Aethionema arabicum HOM05D005029 ORTHO05D006052 5.7e-63 245.4 303 50.2
Oeu034799.1 Olea europaea HOM05D005029 ORTHO05D006052 7.5e-63 245.0 259 54.1
MELO3C017433.2 Cucumis melo HOM05D005029 ORTHO05D006052 1.3e-62 244.2 312 47.8
Sed0026503 Sechium edule HOM05D005029 ORTHO05D006052 2.2e-62 243.4 318 51.3
arahy.Tifrunner.gnm1.ann1.K38ATV Arachis hypogaea HOM05D005029 ORTHO05D006052 2.8e-62 243.0 318 53.5
THA.LOC104814654 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 1.8e-61 240.4 315 51.1
Nn2g14879 Nelumbo nucifera HOM05D005029 ORTHO05D006052 3.1e-61 239.6 308 49.7
Aqoxy7G02787 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 4.1e-61 239.2 281 49.5
BraA08t33909Z Brassica rapa HOM05D005029 ORTHO05D006052 1.3e-59 234.2 299 51.8
Sc16g0010440 Simmondsia chinensis HOM05D005029 ORTHO05D006052 2.9e-59 233.0 296 52.0
PSO170G2568 Papaver somniferum HOM05D005029 ORTHO05D006052 5.0e-59 232.3 306 49.3
SGA_v2.0_scaffold31G12759 Striga asiatica HOM05D005029 ORTHO05D006052 5.0e-59 232.3 272 51.1
PSO063G5693 Papaver somniferum HOM05D005029 ORTHO05D006052 1.2e-57 227.6 292 49.3
SHI09006 Sapria himalayana HOM05D005029 ORTHO05D006052 1.2e-57 227.6 287 46.7
Migut.L01885 Erythranthe guttata HOM05D005029 ORTHO05D006052 1.8e-56 223.8 310 51.6
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 2.6e-55 219.9 280 46.8
A08p19470 Brassica napus HOM05D005029 ORTHO05D006052 3.4e-55 219.5 300 50.3
ECA240G3783 Erigeron canadensis HOM05D005029 ORTHO05D006052 3.4e-55 219.5 249 53.4
BcaNung00506 Brassica carinata HOM05D005029 ORTHO05D006052 7.0e-53 211.8 264 52.7
CSS0012939 Camellia sinensis var. sinensis HOM05D005029 ORTHO05D006052 2.0e-52 210.3 316 47.5
unitig_699.g19404 Utricularia gibba HOM05D005029 ORTHO05D006052 1.9e-50 203.8 300 42.7
CDE04G3679 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 1.6e-49 200.7 274 47.1
BcaC09g51777 Brassica carinata HOM05D000106 ORTHO05D000160 2.1e-49 200.3 254 53.5
A01p08140 Brassica napus HOM05D005029 ORTHO05D006052 2.3e-48 196.8 292 49.3
BraA01t00761Z Brassica rapa HOM05D005029 ORTHO05D006052 3.1e-48 196.4 293 48.5
Lalb_Chr13g0300031 Lupinus albus HOM05D005029 ORTHO05D006052 4.0e-48 196.1 302 46.0
PGR142G1735 Punica granatum HOM05D005029 ORTHO05D006052 4.0e-48 196.1 268 50.7
arahy.Tifrunner.gnm1.ann1.J7B49U Arachis hypogaea HOM05D005029 ORTHO05D006052 5.2e-48 195.7 212 58.5
BcaC09g51764 Brassica carinata HOM05D005029 ORTHO05D006052 1.2e-47 194.5 290 49.7
C03p88970 Brassica napus HOM05D005029 ORTHO05D006052 7.5e-47 191.8 268 48.9
BolC1t00902H Brassica oleracea HOM05D005029 ORTHO05D006052 1.3e-46 191.0 302 47.7
Oeu044675.2 Olea europaea HOM05D005029 ORTHO05D006052 1.3e-46 191.0 313 40.6
BcaC07g37961 Brassica carinata HOM05D005029 ORTHO05D006052 2.9e-46 189.9 305 44.3
C01p09110 Brassica napus HOM05D005029 ORTHO05D006052 6.4e-46 188.7 253 52.2
ATR0626G110 Amborella trichopoda HOM05D005029 ORTHO05D006052 4.1e-45 186.0 320 41.9
CDE02G0552 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 4.1e-45 186.0 299 44.1
unitig_27.g24759 Utricularia gibba HOM05D005029 ORTHO05D006052 1.1e-42 177.9 300 40.3
Migut.J00802 Erythranthe guttata HOM05D005029 ORTHO05D006052 1.4e-40 171.0 299 44.8
HPP92_004703 Vanilla planifolia HOM05D005029 ORTHO05D006052 1.2e-39 167.9 246 46.7
Rhsim01G0118000 Rhododendron simsii HOM05D005029 ORTHO05D006052 4.9e-38 162.5 249 40.6
C07p57380 Brassica napus HOM05D005029 ORTHO05D006052 4.1e-37 159.5 178 55.6
Lj5A672T26 Lonicera japonica HOM05D005029 ORTHO05D006052 2.7e-36 156.8 176 51.1
Os04g0606800 Oryza sativa ssp. japonica HOM05D005029 ORTHO05D006052 3.5e-36 156.4 253 40.3
Duzib168G1982 Durio zibethinus HOM05D005029 ORTHO05D006052 8.6e-35 151.8 169 54.4
SEGI_23735 Sequoiadendron giganteum HOM05D005029 ORTHO05D006052 2.8e-33 146.7 266 39.1
Zm00001eb071460 Zea mays HOM05D005029 ORTHO05D006052 4.7e-33 146.0 271 37.6
AagrBONN_evm.TU.Sc2ySwM_368.2110 Anthoceros agrestis HOM05D005029 ORTHO05D006052 1.4e-32 144.4 270 35.2
Zm00001eb430500 Zea mays HOM05D005029 ORTHO05D006052 4.0e-32 142.9 268 36.2
Mapoly0076s0086 Marchantia polymorpha HOM05D005029 ORTHO05D006052 7.6e-31 138.7 292 34.2
A03p59350 Brassica napus HOM05D005029 ORTHO05D006052 1.3e-27 127.9 268 36.9
SMO358G0278 Selaginella moellendorffii HOM05D005029 ORTHO05D006052 1.7e-27 127.5 283 36.7
Pp3c9_8340 Physcomitrium patens HOM05D005029 ORTHO05D006052 1.2e-23 114.8 298 30.5
BcaB06g28011 Brassica carinata HOM05D005029 ORTHO05D006052 8.4e-22 108.6 99 58.6
BcaC05g25672 Brassica carinata HOM05D005029 ORTHO05D006052 2.7e-20 103.6 244 37.3
vmacro20818 Vaccinium macrocarpon HOM05D005029 ORTHO05D006052 1.2e-15 88.2 74 58.1
BolC6t39910H Brassica oleracea HOM05D005029 ORTHO05D006052 2.2e-14 84.0 176 39.2
Lj5C672T2 Lonicera japonica HOM05D005029 ORTHO05D006052 6.0e-12 75.9 52 69.2
Aa31LG8G16260 Aethionema arabicum HOM05D005029 ORTHO05D006052 1.3e-09 68.2 74 50.0
CBR_g52634 Chara braunii HOM05D005029 ORTHO05D006052 2.8e-09 67.0 157 35.0
BcaB06g26390 Brassica carinata HOM05D005029 ORTHO05D006052 1.1e-08 65.1 112 42.0
Aqoxy377s001 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 1.8e-08 64.3 74 47.3
Pp3c9_14880 Physcomitrium patens HOM05D005029 ORTHO05D006052 3.1e-08 63.5 127 33.1
BcaB04g18770 Brassica carinata HOM05D005029 ORTHO05D006052 9.0e-08 62.0 75 49.3
BolC5t30251H Brassica oleracea HOM05D005029 ORTHO05D006052 2.0e-07 60.8 99 43.4


User provided reference genes

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