Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 3.3e-141 505.4 324 100.0
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.2e-135 486.9 324 97.8
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 1.6e-135 486.5 326 97.9
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.6e-135 486.5 326 97.9
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 6.3e-132 474.6 327 96.6
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 1.0e-102 377.5 331 84.6
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 5.8e-69 265.4 361 65.1
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 7.6e-69 265.0 335 67.5
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 2.2e-68 263.5 333 67.0
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 3.3e-56 223.0 329 53.8
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 9.6e-56 221.5 336 62.8
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 9.6e-56 221.5 344 59.6
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 1.3e-55 221.1 344 61.0
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 1.4e-54 217.6 346 53.8
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 1.1e-51 208.0 344 60.8
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 1.4e-51 207.6 341 54.0
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 1.2e-50 204.5 337 55.8
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 1.6e-50 204.1 337 60.8
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 3.5e-50 203.0 333 53.2
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 6.0e-50 202.2 333 43.5
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 6.0e-50 202.2 335 51.6
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 1.0e-49 201.4 344 56.7
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 3.0e-49 199.9 330 60.3
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 9.6e-48 194.9 338 52.4
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 4.8e-47 192.6 336 50.6
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 4.8e-47 192.6 336 50.6
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 1.1e-46 191.4 332 60.8
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 6.9e-46 188.7 336 50.0
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 1.2e-45 188.0 334 51.2
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 1.5e-45 187.6 346 51.4
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 3.4e-45 186.4 346 56.1
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 4.5e-45 186.0 345 53.9
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 5.8e-45 185.7 341 57.2
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 3.2e-43 179.9 342 50.9
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 9.3e-43 178.3 340 52.9
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 7.9e-42 175.3 343 50.1
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 1.3e-41 174.5 338 51.2
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 1.8e-41 174.1 356 48.0
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 1.5e-40 171.0 332 56.0
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 1.9e-40 170.6 329 49.2
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 2.5e-40 170.2 352 48.6
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 2.5e-40 170.2 332 50.9
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 4.3e-40 169.5 331 46.2
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 9.6e-40 168.3 328 48.2
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 1.3e-39 167.9 330 48.8
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 4.8e-39 166.0 326 55.2
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 6.2e-39 165.6 333 50.8
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 6.2e-39 165.6 333 50.8
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 2.4e-38 163.7 333 49.2
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 1.5e-37 161.0 347 38.6
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 2.6e-37 160.2 328 47.9
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 2.6e-37 160.2 344 36.9
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 5.8e-37 159.1 338 48.8
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 1.1e-35 154.8 331 47.4
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 3.2e-35 153.3 321 42.1
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 1.2e-34 151.4 367 44.1
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 7.9e-34 148.7 343 38.2
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 1.3e-33 147.9 320 47.8
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 1.5e-32 144.4 328 48.8
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 3.3e-32 143.3 311 53.7
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 4.3e-32 142.9 350 50.3
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 4.3e-32 142.9 350 50.3
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 4.3e-32 142.9 350 50.3
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 5.7e-32 142.5 339 43.7
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 5.7e-32 142.5 343 39.4
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 9.6e-32 141.7 295 47.5
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 1.6e-31 141.0 323 48.0
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 2.8e-31 140.2 366 44.5
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 6.2e-31 139.0 344 43.3
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 1.1e-30 138.3 327 46.2
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 3.1e-30 136.7 369 42.8
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 9.0e-30 135.2 336 47.9
Actinidia26533 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.2e-29 134.8 324 49.1
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 1.2e-29 134.8 343 48.4
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 1.5e-29 134.4 366 44.5
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 5.8e-29 132.5 316 37.0
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 5.8e-29 132.5 331 50.5
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 7.6e-29 132.1 336 33.3
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 1.3e-28 131.3 341 33.7
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 1.3e-28 131.3 335 34.9
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.7e-28 131.0 318 45.0
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 2.2e-28 130.6 334 44.9
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 2.2e-28 130.6 316 43.7
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 8.4e-28 128.6 317 42.6
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 8.4e-28 128.6 317 42.6
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 1.1e-27 128.3 330 33.9
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 1.4e-27 127.9 330 35.8
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 1.4e-27 127.9 315 41.6
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 1.9e-27 127.5 336 33.3
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 9.3e-27 125.2 284 39.1
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 1.2e-26 124.8 343 46.9
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.6e-26 124.4 284 39.8
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 2.1e-26 124.0 343 46.6
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 1.0e-25 121.7 337 46.3
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 1.0e-25 121.7 340 46.2
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.3e-25 121.3 333 46.8
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 1.8e-25 120.9 344 45.6
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 1.8e-25 120.9 344 45.6
VMungo1215G1442 Vigna mungo HOM05D004533 ORTHO05D005347 1.8e-25 120.9 122 60.7
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 3.0e-25 120.2 343 46.6
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 3.0e-25 120.2 339 35.1
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 6.7e-25 119.0 339 46.0
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 8.7e-25 118.6 340 45.9
CANSAT64G2295 Cannabis sativa HOM05D004533 ORTHO05D005347 1.1e-24 118.2 394 45.7
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 3.3e-24 116.7 340 47.1
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 4.3e-24 116.3 346 42.2
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 9.7e-24 115.2 306 43.5
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 9.7e-24 115.2 307 45.0
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 1.3e-23 114.8 320 42.5
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 2.2e-23 114.0 343 45.5
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 3.7e-23 113.2 294 39.1
MBI16_g39936_MAGBIO Magnolia biondii HOM05D004533 ORTHO05D005347 4.8e-23 112.8 321 36.4
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 6.3e-23 112.5 342 45.3
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 6.3e-23 112.5 327 46.5
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 6.3e-23 112.5 331 37.8
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 6.3e-23 112.5 326 41.1
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 6.3e-23 112.5 334 35.3
Ah.03g138730 Amaranthus hybridus HOM05D004533 ORTHO05D005347 2.4e-22 110.5 325 35.1
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 3.1e-22 110.2 341 38.7
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 3.1e-22 110.2 290 33.8
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 3.1e-22 110.2 282 52.1
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 4.1e-22 109.8 321 46.4
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 1.5e-21 107.8 346 45.1
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 5.9e-21 105.9 327 40.1
Actinidia16147 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.0e-20 105.1 323 44.6
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 1.0e-20 105.1 335 35.2
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 1.3e-20 104.8 323 31.9
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 2.2e-20 104.0 316 33.2
Lsat_1_v5_gn_4_11700 Lactuca sativa HOM05D004533 ORTHO05D005347 6.5e-20 102.4 348 38.5
Nn3g17512 Nelumbo nucifera HOM05D004533 ORTHO05D005347 6.5e-20 102.4 314 49.4
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 5.5e-19 99.4 162 46.9
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 9.4e-19 98.6 338 39.1
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 9.4e-19 98.6 333 45.0
Actinidia13399 Actinidia chinensis HOM05D004533 ORTHO05D005347 2.7e-18 97.1 216 51.9
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 4.6e-18 96.3 334 37.7
Aa31LG4G11830 Aethionema arabicum HOM05D004533 ORTHO05D005347 1.0e-17 95.1 297 48.5
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 2.0e-16 90.9 317 32.2
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 2.5e-16 90.5 323 30.3
DCAR_007202 Daucus carota HOM05D004533 ORTHO05D005347 6.3e-15 85.9 338 35.5
PGR102G1315 Punica granatum HOM05D004533 ORTHO05D005347 3.1e-14 83.6 328 43.0
BcaC08g45911 Brassica carinata HOM05D004533 ORTHO05D005347 5.9e-13 79.3 269 41.6
BcaC08g45912 Brassica carinata HOM05D004533 ORTHO05D005347 1.0e-12 78.6 271 41.3
Migut.E00039 Erythranthe guttata HOM05D004533 ORTHO05D005347 1.1e-11 75.1 324 41.7
PSO782G4709 Papaver somniferum HOM05D004533 ORTHO05D005347 4.2e-11 73.2 325 32.6
BcaC08g45913 Brassica carinata HOM05D004533 ORTHO05D005347 6.1e-10 69.3 307 36.8
PGR119G0103 Punica granatum HOM05D004533 ORTHO05D005347 6.1e-10 69.3 340 37.6
PSO063G5982 Papaver somniferum HOM05D004533 ORTHO05D005347 1.4e-09 68.2 324 29.6
GSVIVG01012248001 Vitis vinifera HOM05D004533 ORTHO05D005347 2.2e-07 60.8 40 75.0
Carub.0001s1340 Capsella rubella HOM05D014954 ORTHO05D016461 6.3e-07 59.3 118 38.1
HPP92_007737 Vanilla planifolia HOM05D004533 ORTHO05D005347 9.1e-06 55.5 103 39.8


User provided reference genes

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