Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G3736 Fragaria x ananassa HOM05D006345 ORTHO05D007428 2.2e-140 502.3 254 100.0
FvH4_3g13390 Fragaria vesca HOM05D006345 ORTHO05D007428 3.9e-137 491.5 254 98.4
FAN11G3812 Fragaria x ananassa HOM05D006345 ORTHO05D007428 2.5e-136 488.8 254 98.0
FAN21G0075 Fragaria x ananassa HOM05D006345 ORTHO05D007428 3.3e-136 488.4 254 97.6
FAN25G2350 Fragaria x ananassa HOM05D006345 ORTHO05D007428 3.1e-134 481.9 254 96.9
RcHm_v2.0_Chr5g0022101 Rosa chinensis HOM05D006345 ORTHO05D007428 5.1e-129 464.5 254 92.9
Prupe.4G121300 Prunus persica HOM05D006345 ORTHO05D007428 5.5e-115 417.9 249 84.3
MD05G1242200 Malus domestica HOM05D006345 ORTHO05D007428 6.3e-111 404.4 254 80.7
CiPaw.01G263700 Carya illinoinensis HOM05D006345 ORTHO05D007428 3.8e-108 395.2 248 79.4
CSS0008102 Camellia sinensis var. sinensis HOM05D006345 ORTHO05D007428 3.5e-106 388.7 248 78.2
Dinv19690 Davidia involucrata HOM05D006345 ORTHO05D007428 7.9e-106 387.5 258 76.4
QL08p052794 Quercus lobata HOM05D006345 ORTHO05D007428 5.1e-105 384.8 255 76.5
Rhsim13G0136400 Rhododendron simsii HOM05D006345 ORTHO05D007428 8.7e-105 384.0 258 75.6
CsaV3_7G007230 Cucumis sativus L. HOM05D006345 ORTHO05D007428 2.2e-103 379.4 253 75.9
ClCG02G007550 Citrullus lanatus HOM05D006345 ORTHO05D007428 6.3e-103 377.9 253 75.1
Duzib212G0272 Durio zibethinus HOM05D006345 ORTHO05D007428 6.3e-103 377.9 252 75.0
Ciclev10016345m.g Citrus clementina HOM05D006345 ORTHO05D007428 1.4e-102 376.7 257 74.3
MELO3C018575.2 Cucumis melo HOM05D006345 ORTHO05D007428 1.4e-102 376.7 253 75.1
Sed0021159 Sechium edule HOM05D006345 ORTHO05D007428 1.8e-102 376.3 253 74.7
Sed0017834 Sechium edule HOM05D006345 ORTHO05D007428 4.1e-102 375.2 252 74.6
TAR624G0710 Trochodendron aralioides HOM05D006345 ORTHO05D007428 1.5e-101 373.2 255 74.1
CiPaw.14G048700 Carya illinoinensis HOM05D006345 ORTHO05D007428 2.0e-101 372.9 234 78.2
Manes.16G061100 Manihot esculenta HOM05D006345 ORTHO05D007428 2.0e-101 372.9 255 72.5
Thecc.04G283900 Theobroma cacao HOM05D006345 ORTHO05D007428 5.9e-101 371.3 257 73.2
Lalb_Chr07g0189941 Lupinus albus HOM05D006345 ORTHO05D007428 5.0e-100 368.2 253 73.5
Nn3g17198 Nelumbo nucifera HOM05D006345 ORTHO05D007428 1.9e-99 366.3 255 71.0
Cpa.g.sc12.137 Carica papaya HOM05D006345 ORTHO05D007428 4.2e-99 365.2 254 73.2
Sabra01G0052000 Salix brachista HOM05D006345 ORTHO05D007428 5.5e-99 364.8 255 71.8
Potri.001G073700 Populus trichocarpa HOM05D006345 ORTHO05D007428 9.4e-99 364.0 255 71.8
Aqoxy7G02153 Aquilegia oxysepala HOM05D006345 ORTHO05D007428 2.1e-98 362.8 254 70.1
Ca_19950_v3 Cicer arietinum L. HOM05D006345 ORTHO05D007428 2.7e-98 362.5 254 72.8
COL.COLO4_13882 Corchorus olitorius HOM05D006345 ORTHO05D007428 3.6e-98 362.1 256 71.5
Gorai.011G189500 Gossypium raimondii HOM05D006345 ORTHO05D007428 1.0e-97 360.5 257 70.4
Nitab4.5_0001925g0110 Nicotiana tabacum HOM05D006345 ORTHO05D007428 1.0e-97 360.5 224 77.7
Glyma.03G027700 Glycine max HOM05D006345 ORTHO05D007428 1.4e-97 360.1 253 72.7
Gohir.A10G163600 Gossypium hirsutum HOM05D006345 ORTHO05D007428 1.8e-97 359.8 257 70.4
Lj3g0013440 Lotus japonicus HOM05D006345 ORTHO05D007428 1.8e-97 359.8 252 72.2
Nitab4.5_0008647g0020 Nicotiana tabacum HOM05D006345 ORTHO05D007428 1.8e-97 359.8 225 77.8
TPR.G7580 Trifolium pratense HOM05D006345 ORTHO05D007428 5.1e-97 358.2 253 71.9
Psat7g230920 Pisum sativum HOM05D006345 ORTHO05D007428 8.8e-97 357.5 254 71.3
Medtr4g024860 Medicago truncatula HOM05D000001 ORTHO05D000003 2.0e-96 356.3 252 71.4
PGSC0003DMG400023836 Solanum tuberosum HOM05D006345 ORTHO05D007428 4.3e-96 355.1 224 77.2
Phvul.003G037201 Phaseolus vulgaris HOM05D006345 ORTHO05D007428 5.7e-96 354.8 252 71.0
TWI53G2073 Tripterygium wilfordii HOM05D006345 ORTHO05D007428 5.7e-96 354.8 255 70.2
Glyma.01G139633 Glycine max HOM05D006345 ORTHO05D007428 1.3e-95 353.6 254 71.7
HanXRQChr14g0447431 Helianthus annuus HOM05D006345 ORTHO05D007428 1.3e-95 353.6 248 69.4
Gohir.D10G170000 Gossypium hirsutum HOM05D006345 ORTHO05D007428 1.7e-95 353.2 257 68.5
DCAR_001254 Daucus carota HOM05D006345 ORTHO05D007428 2.2e-95 352.8 248 71.4
ECA238G2485 Erigeron canadensis HOM05D006345 ORTHO05D007428 2.2e-95 352.8 248 69.8
MBI16_g30839_MAGBIO Magnolia biondii HOM05D006345 ORTHO05D007428 8.2e-95 350.9 244 72.1
VMungo1383G2204 Vigna mungo HOM05D006345 ORTHO05D007428 1.8e-94 349.7 253 69.6
Peaxi162Scf00062g10131 Petunia axillaris HOM05D006345 ORTHO05D007428 2.4e-94 349.4 224 75.4
Sc05g0003040 Simmondsia chinensis HOM05D006345 ORTHO05D007428 2.4e-94 349.4 254 68.9
PGR042G3945 Punica granatum HOM05D006345 ORTHO05D007428 1.2e-93 347.1 256 70.3
CANSAT11G1250 Cannabis sativa HOM05D006345 ORTHO05D007428 2.0e-93 346.3 219 78.1
arahy.Tifrunner.gnm1.ann1.P3RVZQ Arachis hypogaea HOM05D006345 ORTHO05D007428 2.6e-93 345.9 253 70.8
MSTRG.21400 Avicennia marina HOM05D006345 ORTHO05D007428 2.6e-93 345.9 238 72.7
Lalb_Chr13g0291791 Lupinus albus HOM05D006345 ORTHO05D007428 2.6e-93 345.9 252 71.0
CAN.G575.62 Capsicum annuum HOM05D006345 ORTHO05D007428 3.4e-93 345.5 224 75.0
arahy.Tifrunner.gnm1.ann1.G9BQRV Arachis hypogaea HOM05D006345 ORTHO05D007428 4.5e-93 345.1 253 70.4
SalBow7G0027 Salvia bowleyana HOM05D006345 ORTHO05D007428 5.9e-93 344.7 246 69.9
arahy.Tifrunner.gnm1.ann1.W97VC3 Arachis hypogaea HOM05D006345 ORTHO05D007428 1.3e-92 343.6 253 70.0
Oeu012935.1 Olea europaea HOM05D006345 ORTHO05D007428 1.3e-92 343.6 220 76.4
PSO675G7514 Papaver somniferum HOM05D006345 ORTHO05D007428 2.2e-92 342.8 264 68.2
Sopen12g034690 Solanum pennellii HOM05D006345 ORTHO05D007428 2.2e-92 342.8 225 73.8
arahy.Tifrunner.gnm1.ann1.S1VR06 Arachis hypogaea HOM05D006345 ORTHO05D007428 2.9e-92 342.4 253 70.0
THA.LOC104822694 Tarenaya hassleriana HOM05D006345 ORTHO05D007428 2.9e-92 342.4 258 70.2
Cc09_g04580 Coffea canephora HOM05D006345 ORTHO05D007428 8.5e-92 340.9 223 73.5
Migut.D00572 Erythranthe guttata HOM05D006345 ORTHO05D007428 1.4e-91 340.1 231 71.9
Cc06_g02140 Coffea canephora HOM05D006345 ORTHO05D007428 7.2e-91 337.8 257 66.1
Oeu017184.1 Olea europaea HOM05D006345 ORTHO05D007428 7.2e-91 337.8 225 75.1
PSO541G0968 Papaver somniferum HOM05D006345 ORTHO05D007428 1.2e-90 337.0 264 67.8
SalBow2G1193 Salvia bowleyana HOM05D006345 ORTHO05D007428 2.1e-90 336.3 223 73.5
Aqoxy3G02382 Aquilegia oxysepala HOM05D006345 ORTHO05D007428 3.6e-90 335.5 223 73.5
Eucgr.F03783 Eucalyptus grandis HOM05D006345 ORTHO05D007428 3.6e-90 335.5 254 68.1
EL10Ac3g05939 Beta vulgaris HOM05D006345 ORTHO05D007428 4.7e-90 335.1 257 65.0
Aa31LG8G650 Aethionema arabicum HOM05D006345 ORTHO05D007428 1.4e-89 333.6 245 67.3
AUR62015383 Chenopodium quinoa HOM05D006345 ORTHO05D007428 1.4e-89 333.6 258 65.5
unitig_52.g17581 Utricularia gibba HOM05D006345 ORTHO05D007428 3.0e-89 332.4 222 71.2
AT3G13440 Arabidopsis thaliana HOM05D006345 ORTHO05D007428 1.5e-88 330.1 230 71.7
AL3G25340 Arabidopsis lyrata HOM05D006345 ORTHO05D007428 2.6e-88 329.3 230 72.2
Ah.15g099610 Amaranthus hybridus HOM05D006345 ORTHO05D007428 1.7e-87 326.6 258 64.3
PSO782G3410 Papaver somniferum HOM05D006345 ORTHO05D007428 1.7e-87 326.6 221 74.7
Ah.07g202050 Amaranthus hybridus HOM05D006345 ORTHO05D007428 6.3e-87 324.7 258 63.2
Thhalv10021414m.g Eutrema salsugineum HOM05D006345 ORTHO05D007428 1.8e-86 323.2 224 72.8
Lsat_1_v5_gn_3_103240 Lactuca sativa HOM05D006345 ORTHO05D007428 1.8e-86 323.2 215 73.0
Carub.0006s3398 Capsella rubella HOM05D006345 ORTHO05D007428 3.1e-86 322.4 227 70.5
SGA_v2.0_scaffold8G04616 Striga asiatica HOM05D006345 ORTHO05D007428 5.3e-86 321.6 223 70.9
CARHR088090 Cardamine hirsuta HOM05D006345 ORTHO05D007428 7.0e-86 321.2 238 69.7
Carub.0003s1288 Capsella rubella HOM05D006345 ORTHO05D007428 9.1e-86 320.9 226 72.6
Sp3g11640 Schrenkiella parvula HOM05D006345 ORTHO05D007428 2.6e-85 319.3 225 72.0
BcaC09g48312 Brassica carinata HOM05D006345 ORTHO05D007428 3.5e-85 318.9 227 70.9
C01p51620 Brassica napus HOM05D006345 ORTHO05D007428 3.5e-85 318.9 227 70.9
BolC1t05105H Brassica oleracea HOM05D006345 ORTHO05D007428 3.5e-85 318.9 227 70.9
BraA05t22416Z Brassica rapa HOM05D002140 ORTHO05D007428 7.7e-85 317.8 256 66.0
A01p40130 Brassica napus HOM05D006345 ORTHO05D007428 2.2e-84 316.2 231 69.7
A05p36090 Brassica napus HOM05D002140 ORTHO05D007428 8.5e-84 314.3 256 65.2
BcaB04g21015 Brassica carinata HOM05D006345 ORTHO05D007428 1.1e-83 313.9 224 71.4
CDE04G1044 Ceratophyllum demersum HOM05D006345 ORTHO05D007428 1.9e-83 313.2 211 70.6
C05p54470 Brassica napus HOM05D002140 ORTHO05D007428 2.5e-83 312.8 256 64.5
BraA01t04054Z Brassica rapa HOM05D006345 ORTHO05D007428 2.5e-83 312.8 231 68.8
BcaC05g29179 Brassica carinata HOM05D002140 ORTHO05D007428 4.2e-83 312.0 229 69.0
BolC5t34114H Brassica oleracea HOM05D002140 ORTHO05D007428 4.2e-83 312.0 229 69.0
CDE06G0136 Ceratophyllum demersum HOM05D006345 ORTHO05D007428 1.6e-82 310.1 211 69.2
HPP92_018755 Vanilla planifolia HOM05D006345 ORTHO05D007428 6.7e-81 304.7 257 61.5
ATR0561G247 Amborella trichopoda HOM05D006345 ORTHO05D007428 1.5e-80 303.5 244 61.9
Lsat_1_v5_gn_2_63801 Lactuca sativa HOM05D006345 ORTHO05D007428 4.4e-80 302.0 248 61.3
SHI16738 Sapria himalayana HOM05D006345 ORTHO05D007428 6.3e-79 298.1 209 70.3
Os03g0824200 Oryza sativa ssp. japonica HOM05D006345 ORTHO05D007428 3.1e-78 295.8 220 65.0
Solyc12g100070.3 Solanum lycopersicum HOM05D006345 ORTHO05D007428 3.8e-76 288.9 188 73.9
Zm00001eb211470 Zea mays HOM05D006345 ORTHO05D007428 9.4e-75 284.3 209 66.0
Pp3c9_17440 Physcomitrium patens HOM05D006345 ORTHO05D007428 1.2e-74 283.9 210 64.3
Mapoly0069s0066 Marchantia polymorpha HOM05D006345 ORTHO05D007428 4.0e-73 278.9 243 56.4
CBR_g45447 Chara braunii HOM05D006345 ORTHO05D007428 5.7e-72 275.0 218 60.6
AUR62002307 Chenopodium quinoa HOM05D006345 ORTHO05D007428 2.4e-70 269.6 258 56.6
SMO358G0200 Selaginella moellendorffii HOM05D006345 ORTHO05D007428 9.1e-70 267.7 208 61.5
AagrBONN_evm.TU.Sc2ySwM_117.4015 Anthoceros agrestis HOM05D006345 ORTHO05D007428 4.5e-69 265.4 210 59.5
Thhalv10009961m.g Eutrema salsugineum HOM05D006345 ORTHO05D007428 3.8e-68 262.3 228 59.6
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 1.6e-61 240.4 185 64.9
SEGI_21458 Sequoiadendron giganteum HOM05D006345 ORTHO05D007428 8.0e-58 228.0 160 70.6
CSS0000171 Camellia sinensis var. sinensis HOM05D006345 ORTHO05D007428 3.1e-49 199.5 138 73.2
CAN.G1126.44 Capsicum annuum HOM05D006345 ORTHO05D007428 1.3e-47 194.1 175 57.7
Cre01.g036750 Chlamydomonas reinhardtii HOM05D006345 ORTHO05D007428 5.4e-46 188.7 213 46.0
Zm00001eb141630 Zea mays HOM05D006345 ORTHO05D007428 1.2e-42 177.6 144 62.5
Potri.003G157201 Populus trichocarpa HOM05D006345 ORTHO05D007428 1.1e-35 154.5 104 71.2
MCO02G297 Micromonas commoda HOM05D006345 ORTHO05D007428 8.9e-33 144.8 170 43.5
Sabra03G0114100 Salix brachista HOM05D000029 ORTHO05D000854 5.4e-30 135.6 239 37.7
Zm00001eb356470 Zea mays HOM05D006345 ORTHO05D007428 9.6e-27 124.8 98 64.3
ATR0006G036 Amborella trichopoda HOM05D006345 ORTHO05D007428 7.9e-13 78.6 50 72.0
Cfa025913 Carpinus fangiana HOM05D006345 ORTHO05D007428 1.5e-08 64.3 223 26.9
Lj1P1152T38 Lonicera japonica HOM05D006345 ORTHO05D007428 2.0e-08 63.9 52 57.7
Aa31LG1G17780 Aethionema arabicum HOM05D006002 ORTHO05D007651 3.4e-08 63.2 139 32.4
AUR62035491 Chenopodium quinoa HOM05D006002 ORTHO05D007651 4.5e-08 62.8 105 38.1
HanXRQChr11g0335201 Helianthus annuus HOM05D006002 ORTHO05D007651 4.5e-08 62.8 158 29.1
AL8G41420 Arabidopsis lyrata HOM05D006002 ORTHO05D007651 7.6e-08 62.0 143 31.5
Eucgr.F01442 Eucalyptus grandis HOM05D006002 ORTHO05D007651 7.6e-08 62.0 139 33.1
CiPaw.11G062100 Carya illinoinensis HOM05D006002 ORTHO05D007651 1.3e-07 61.2 172 30.8
Eucgr.F01438 Eucalyptus grandis HOM05D006002 ORTHO05D007651 1.3e-07 61.2 170 30.0
CARHR278060 Cardamine hirsuta HOM05D006002 ORTHO05D007651 1.7e-07 60.8 139 30.9
ECA236G2913 Erigeron canadensis HOM05D006002 ORTHO05D007651 1.7e-07 60.8 137 32.1
Carub.0008s2494 Capsella rubella HOM05D006002 ORTHO05D007651 2.2e-07 60.5 147 29.9
AUR62041934 Chenopodium quinoa HOM05D006002 ORTHO05D007651 2.9e-07 60.1 105 37.1
THA.LOC104819332 Tarenaya hassleriana HOM05D006002 ORTHO05D007651 3.8e-07 59.7 133 31.6
ATR0165G036 Amborella trichopoda HOM05D006002 ORTHO05D007651 6.4e-07 58.9 126 30.2
AT5G64150 Arabidopsis thaliana HOM05D006002 ORTHO05D007651 6.4e-07 58.9 139 30.2
BolC3t18471H Brassica oleracea HOM05D006002 ORTHO05D007651 6.4e-07 58.9 139 30.2
BraA06t26026Z Brassica rapa HOM05D006002 ORTHO05D007651 6.4e-07 58.9 139 29.5
Thhalv10004403m.g Eutrema salsugineum HOM05D006002 ORTHO05D007651 6.4e-07 58.9 139 29.5
Hund02296 Selenicereus undatus HOM05D006002 ORTHO05D007651 6.4e-07 58.9 115 36.5
C03p62100 Brassica napus HOM05D006002 ORTHO05D007651 8.4e-07 58.5 139 30.2
FvH4_3g16091 Fragaria vesca HOM05D006002 ORTHO05D007651 8.4e-07 58.5 140 30.7
FAN11G0453 Fragaria x ananassa HOM05D006002 ORTHO05D007651 8.4e-07 58.5 140 30.7
Os12g0612500 Oryza sativa ssp. japonica HOM05D006002 ORTHO05D007651 8.4e-07 58.5 152 27.6
Sed0002243 Sechium edule HOM05D006002 ORTHO05D007651 8.4e-07 58.5 172 27.9
FAN25G3512 Fragaria x ananassa HOM05D006002 ORTHO05D007651 1.1e-06 58.2 140 30.7
Sp2g27210 Schrenkiella parvula HOM05D006002 ORTHO05D007651 1.1e-06 58.2 139 30.9
A06p30870 Brassica napus HOM05D006002 ORTHO05D007651 1.4e-06 57.8 138 28.3
CsaV3_2G022200 Cucumis sativus L. HOM05D006002 ORTHO05D007651 1.4e-06 57.8 170 28.2
Lj8A185G55 Lonicera japonica HOM05D006002 ORTHO05D007651 1.4e-06 57.8 157 29.3
MD10G1197800 Malus domestica HOM05D006002 ORTHO05D007651 1.4e-06 57.8 111 34.2
Pp3c1_22930 Physcomitrium patens HOM05D006002 ORTHO05D007651 1.4e-06 57.8 153 30.7
Sc03g0007860 Simmondsia chinensis HOM05D006002 ORTHO05D007651 1.9e-06 57.4 143 30.8
Rhsim04G0006400 Rhododendron simsii HOM05D006002 ORTHO05D007651 2.4e-06 57.0 175 28.6
VMungo1080G0998 Vigna mungo HOM05D001395 ORTHO05D002039 2.4e-06 57.0 213 26.8
BcaC01g02672 Brassica carinata HOM05D006002 ORTHO05D007651 3.2e-06 56.6 139 29.5
vmacro09790 Vaccinium macrocarpon HOM05D006002 ORTHO05D007651 4.2e-06 56.2 154 30.5
AagrBONN_evm.TU.Sc2ySwM_344.4971 Anthoceros agrestis HOM05D006002 ORTHO05D007651 5.5e-06 55.8 144 31.9
Ciclev10020646m.g Citrus clementina HOM05D006002 ORTHO05D007651 5.5e-06 55.8 124 32.3
CAN.G943.23 Capsicum annuum HOM05D006002 ORTHO05D007651 7.1e-06 55.5 185 27.0
Sopen07g034460 Solanum pennellii HOM05D006002 ORTHO05D007651 7.1e-06 55.5 175 26.3
FAN16G0275 Fragaria x ananassa HOM05D006002 ORTHO05D007651 9.3e-06 55.1 140 30.7
Nitab4.5_0001235g0050 Nicotiana tabacum HOM05D006002 ORTHO05D007651 9.3e-06 55.1 165 26.7
Peaxi162Scf00232g00102 Petunia axillaris HOM05D006002 ORTHO05D007651 9.3e-06 55.1 204 27.0


User provided reference genes

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