Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G3723 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.1e-195 686.4 329 100.0
FAN25G3768 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.3e-193 679.5 329 98.8
FAN21G3875 Fragaria x ananassa HOM05D005665 ORTHO05D007230 5.0e-193 677.6 329 98.5
FvH4_3g04930 Fragaria vesca HOM05D005665 ORTHO05D007230 7.2e-192 673.7 329 98.2
FAN11G2254 Fragaria x ananassa HOM05D005665 ORTHO05D007230 7.2e-192 673.7 329 98.2
RcHm_v2.0_Chr5g0008091 Rosa chinensis HOM05D005665 ORTHO05D007230 1.0e-185 653.3 329 94.8
MD10G1295900 Malus domestica HOM05D005665 ORTHO05D007230 1.4e-179 632.9 329 90.6
Prupe.4G044600 Prunus persica HOM05D005665 ORTHO05D007230 2.6e-178 628.6 333 90.4
Thecc.06G190100 Theobroma cacao HOM05D005665 ORTHO05D007230 7.4e-173 610.5 326 87.4
CiPaw.10G047200 Carya illinoinensis HOM05D005665 ORTHO05D007230 2.0e-170 602.4 328 87.2
Cfa000422 Carpinus fangiana HOM05D005665 ORTHO05D007230 2.2e-169 599.0 329 87.2
CiPaw.09G058000 Carya illinoinensis HOM05D005665 ORTHO05D007230 2.9e-169 598.6 329 86.3
THA.LOC104806290 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 6.5e-169 597.4 332 84.9
Dinv07542 Davidia involucrata HOM05D005665 ORTHO05D007230 4.2e-168 594.7 317 87.7
Duzib160G0567 Durio zibethinus HOM05D005665 ORTHO05D007230 5.5e-168 594.3 330 85.5
Manes.17G043900 Manihot esculenta HOM05D005665 ORTHO05D007230 7.2e-168 594.0 330 84.8
Actinidia05618 Actinidia chinensis HOM05D005665 ORTHO05D007230 1.2e-167 593.2 317 88.3
THA.LOC104812890 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 1.2e-167 593.2 327 85.6
AUR62014800 Chenopodium quinoa HOM05D005665 ORTHO05D007230 1.6e-167 592.8 321 86.3
Manes.16G026000 Manihot esculenta HOM05D005665 ORTHO05D007230 1.6e-167 592.8 322 85.4
Actinidia01890 Actinidia chinensis HOM05D005665 ORTHO05D007230 2.1e-167 592.4 317 88.0
AUR62016991 Chenopodium quinoa HOM05D005665 ORTHO05D007230 2.7e-167 592.0 329 84.8
Carub.0006s3285 Capsella rubella HOM05D005665 ORTHO05D007230 3.6e-167 591.7 319 85.9
Eucgr.E03124 Eucalyptus grandis HOM05D005665 ORTHO05D007230 3.6e-167 591.7 316 87.0
Duzib192G0757 Durio zibethinus HOM05D005665 ORTHO05D007230 6.1e-167 590.9 327 85.3
Sp6g04030 Schrenkiella parvula HOM05D005665 ORTHO05D007230 6.1e-167 590.9 329 83.9
SpUn0051_0010 Schrenkiella parvula HOM05D005665 ORTHO05D007230 6.1e-167 590.9 329 83.9
TWI38G1053 Tripterygium wilfordii HOM05D005665 ORTHO05D007230 6.1e-167 590.9 327 85.3
TAR627G0371 Trochodendron aralioides HOM05D005665 ORTHO05D007230 1.0e-166 590.1 319 86.8
Peaxi162Scf00461g00010 Petunia axillaris HOM05D005665 ORTHO05D007230 1.8e-166 589.3 322 87.0
QL05p039803 Quercus lobata HOM05D005665 ORTHO05D007230 8.8e-166 587.0 321 86.3
AT4G04930 Arabidopsis thaliana HOM05D005665 ORTHO05D007230 1.2e-165 586.6 333 83.8
BolC9t56129H Brassica oleracea HOM05D005665 ORTHO05D007230 1.5e-165 586.3 326 84.7
Thhalv10028789m.g Eutrema salsugineum HOM05D005665 ORTHO05D007230 3.3e-165 585.1 329 83.0
ClCG03G005940 Citrullus lanatus HOM05D005665 ORTHO05D007230 7.5e-165 583.9 329 83.9
A09p25970 Brassica napus HOM05D005665 ORTHO05D007230 9.7e-165 583.6 326 84.0
BraA09t38164Z Brassica rapa HOM05D005665 ORTHO05D007230 9.7e-165 583.6 326 84.0
Cpa.g.sc27.60 Carica papaya HOM05D005665 ORTHO05D007230 1.3e-164 583.2 319 85.0
CsaV3_1G012180 Cucumis sativus L. HOM05D005665 ORTHO05D007230 1.7e-164 582.8 329 83.3
CANSAT35G1141 Cannabis sativa HOM05D005665 ORTHO05D007230 2.2e-164 582.4 330 84.2
Hma1.2p1_0126F.1_g059290 Hydrangea macrophylla HOM05D005665 ORTHO05D007230 2.2e-164 582.4 318 86.2
CSS0000582 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 3.7e-164 581.6 314 85.7
Gorai.011G026500 Gossypium raimondii HOM05D005665 ORTHO05D007230 4.8e-164 581.3 328 84.1
Nn1g06596 Nelumbo nucifera HOM05D005665 ORTHO05D007230 4.8e-164 581.3 326 82.8
Nitab4.5_0013250g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 6.3e-164 580.9 323 85.8
Gohir.A10G024500 Gossypium hirsutum HOM05D005665 ORTHO05D007230 8.2e-164 580.5 328 83.8
Nitab4.5_0004775g0030 Nicotiana tabacum HOM05D005665 ORTHO05D007230 8.2e-164 580.5 323 85.1
TAR626G1890 Trochodendron aralioides HOM05D005665 ORTHO05D007230 1.1e-163 580.1 320 83.8
Ciclev10015896m.g Citrus clementina HOM05D005665 ORTHO05D007230 1.4e-163 579.7 326 83.1
Peaxi162Scf00530g00218 Petunia axillaris HOM05D005665 ORTHO05D007230 1.4e-163 579.7 326 84.4
MELO3C002591.2 Cucumis melo HOM05D005665 ORTHO05D007230 1.8e-163 579.3 329 82.7
Gohir.D10G025200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 2.4e-163 578.9 318 85.5
Sabra11G0034800 Salix brachista HOM05D005665 ORTHO05D007230 2.4e-163 578.9 323 84.2
BcaC04g21346 Brassica carinata HOM05D005665 ORTHO05D007230 4.1e-163 578.2 326 83.4
C09p32940 Brassica napus HOM05D005665 ORTHO05D007230 4.1e-163 578.2 326 83.4
Gohir.A06G126400 Gossypium hirsutum HOM05D005665 ORTHO05D007230 5.3e-163 577.8 327 82.9
Gohir.D06G131200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 5.3e-163 577.8 327 83.2
Nitab4.5_0003942g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 5.3e-163 577.8 322 84.8
ClCG01G022870 Citrullus lanatus HOM05D005665 ORTHO05D007230 7.0e-163 577.4 323 83.0
Sc05g0007780 Simmondsia chinensis HOM05D005665 ORTHO05D007230 1.2e-162 576.6 326 81.9
EL10Ac8g20360 Beta vulgaris HOM05D005665 ORTHO05D007230 1.6e-162 576.2 321 83.8
Nn1g04043 Nelumbo nucifera HOM05D005665 ORTHO05D007230 1.6e-162 576.2 313 85.3
Nitab4.5_0005615g0050 Nicotiana tabacum HOM05D005665 ORTHO05D007230 1.6e-162 576.2 323 85.4
Solyc10g009030.4 Solanum lycopersicum HOM05D005665 ORTHO05D007230 2.7e-162 575.5 323 84.8
SGA_v2.0_scaffold22G09724 Striga asiatica HOM05D005665 ORTHO05D007230 2.7e-162 575.5 321 83.2
Lj2A287T49 Lonicera japonica HOM05D005665 ORTHO05D007230 3.5e-162 575.1 312 86.5
Potri.011G050800 Populus trichocarpa HOM05D005665 ORTHO05D007230 4.5e-162 574.7 323 83.6
Gorai.010G153100 Gossypium raimondii HOM05D005665 ORTHO05D007230 5.9e-162 574.3 318 84.3
Sopen10g004810 Solanum pennellii HOM05D005665 ORTHO05D007230 5.9e-162 574.3 323 84.8
MSTRG.7328 Avicennia marina HOM05D005665 ORTHO05D007230 7.7e-162 573.9 319 83.4
PGSC0003DMG400022827 Solanum tuberosum HOM05D005665 ORTHO05D007230 1.0e-161 573.5 323 84.8
Migut.M01155 Erythranthe guttata HOM05D005665 ORTHO05D007230 1.3e-161 573.2 322 84.2
Lj6g0021271 Lotus japonicus HOM05D005665 ORTHO05D007230 1.7e-161 572.8 330 83.3
GSVIVG01002020001 Vitis vinifera HOM05D005665 ORTHO05D007230 2.2e-161 572.4 310 84.8
Haze_06494 Corylus avellana HOM05D005665 ORTHO05D007230 5.0e-161 571.2 387 73.9
BcaB01g01848 Brassica carinata HOM05D005665 ORTHO05D007230 6.5e-161 570.9 314 84.4
Lalb_Chr18g0059701 Lupinus albus HOM05D005665 ORTHO05D007230 6.5e-161 570.9 315 84.4
TPR.G36824 Trifolium pratense HOM05D005665 ORTHO05D007230 6.5e-161 570.9 327 82.9
Os02g0639600 Oryza sativa ssp. japonica HOM05D005665 ORTHO05D007230 1.5e-160 569.7 321 81.6
PGR042G0011 Punica granatum HOM05D005665 ORTHO05D007230 1.9e-160 569.3 320 82.8
Ca_00306_v3 Cicer arietinum L. HOM05D005665 ORTHO05D007230 2.5e-160 568.9 314 84.7
Medtr2g013070 Medicago truncatula HOM05D005665 ORTHO05D007230 4.2e-160 568.2 329 81.2
Aqoxy4G01024 Aquilegia oxysepala HOM05D005665 ORTHO05D007230 5.5e-160 567.8 322 81.1
Sed0027057 Sechium edule HOM05D005665 ORTHO05D007230 5.5e-160 567.8 317 83.3
SalBow7G1156 Salvia bowleyana HOM05D005665 ORTHO05D007230 1.6e-159 566.2 319 82.4
Atru.chr10.1913 Acer truncatum HOM05D005665 ORTHO05D007230 2.1e-159 565.8 323 82.7
Cc02_g13170 Coffea canephora HOM05D005665 ORTHO05D007230 2.1e-159 565.8 310 83.9
PSO210G3809 Papaver somniferum HOM05D005665 ORTHO05D007230 2.1e-159 565.8 317 83.0
PSO832G3519 Papaver somniferum HOM05D005665 ORTHO05D007230 2.1e-159 565.8 317 83.0
Glyma.15G072800 Glycine max HOM05D005665 ORTHO05D007230 2.7e-159 565.5 329 80.5
Aa31LG9G9560 Aethionema arabicum HOM05D005665 ORTHO05D007230 6.1e-159 564.3 319 82.1
COL.COLO4_31496 Corchorus olitorius HOM05D005665 ORTHO05D007230 1.4e-158 563.1 300 87.7
Oeu053967.2 Olea europaea HOM05D005665 ORTHO05D007230 3.0e-158 562.0 330 80.6
VMungo0540G1872 Vigna mungo HOM05D005665 ORTHO05D007230 2.6e-157 558.9 321 80.4
Sed0024618 Sechium edule HOM05D005665 ORTHO05D007230 4.4e-157 558.1 330 80.3
Phvul.006G187100 Phaseolus vulgaris HOM05D005665 ORTHO05D007230 9.8e-157 557.0 321 81.3
ATR0680G322 Amborella trichopoda HOM05D005665 ORTHO05D007230 3.7e-156 555.1 316 80.1
Psat1g206640 Pisum sativum HOM05D005665 ORTHO05D007230 3.7e-156 555.1 329 79.6
Zm00001eb075800 Zea mays HOM05D005665 ORTHO05D007230 1.8e-155 552.7 319 79.3
MBI18_g16999_MAGBIO Magnolia biondii HOM05D005665 ORTHO05D007230 2.0e-154 549.3 320 80.9
Glyma.13G240700 Glycine max HOM05D005665 ORTHO05D007230 1.7e-153 546.2 329 77.8
SHI01876 Sapria himalayana HOM05D005665 ORTHO05D007230 5.5e-152 541.2 345 74.5
arahy.Tifrunner.gnm1.ann1.5IXZ6F Arachis hypogaea HOM05D005665 ORTHO05D007230 1.6e-151 539.7 331 77.9
arahy.Tifrunner.gnm1.ann1.C923ZL Arachis hypogaea HOM05D005665 ORTHO05D007230 4.7e-151 538.1 331 77.6
Ah.09g237240 Amaranthus hybridus HOM05D005665 ORTHO05D007230 5.4e-147 524.6 304 79.9
Eucgr.L02776 Eucalyptus grandis HOM05D005665 ORTHO05D007230 5.6e-144 514.6 278 86.0
SEGI_10058 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 1.2e-141 506.9 308 76.0
Lsat_1_v5_gn_1_126041 Lactuca sativa HOM05D005665 ORTHO05D007230 2.2e-140 502.7 311 73.6
HPP92_021012 Vanilla planifolia HOM05D005665 ORTHO05D007230 2.9e-140 502.3 323 73.7
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 6.4e-140 501.1 295 77.3
Nitab4.5_0002158g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 2.0e-138 496.1 307 78.2
RhsimUnG0044900 Rhododendron simsii HOM05D005665 ORTHO05D007230 4.3e-136 488.4 268 84.7
MD05G1314600 Malus domestica HOM05D005665 ORTHO05D007230 4.7e-135 485.0 338 70.7
CAN.G413.22 Capsicum annuum HOM05D005665 ORTHO05D007230 6.2e-135 484.6 266 85.3
Mapoly0083s0054 Marchantia polymorpha HOM05D005665 ORTHO05D007230 3.1e-134 482.3 314 70.7
SMO364G0702 Selaginella moellendorffii HOM05D005665 ORTHO05D007230 2.8e-127 459.1 312 65.7
Pp3c23_19370 Physcomitrium patens HOM05D005665 ORTHO05D007230 1.5e-125 453.4 308 66.6
Pp3c23_19371 Physcomitrium patens HOM05D005665 ORTHO05D007230 1.5e-125 453.4 308 66.6
AagrBONN_evm.TU.Sc2ySwM_344.2491 Anthoceros agrestis HOM05D005665 ORTHO05D007230 2.0e-125 453.0 309 67.0
DCAR_004082 Daucus carota HOM05D005665 ORTHO05D007230 4.3e-120 435.3 251 80.1
AagrBONN_evm.TU.Sc2ySwM_344.2084 Anthoceros agrestis HOM05D005665 ORTHO05D007230 1.4e-115 420.2 311 62.1
CSS0037689 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 2.4e-110 402.9 228 84.2
MCO04G319 Micromonas commoda HOM05D005665 ORTHO05D007230 4.3e-104 382.1 323 57.0
CDE02G1299 Ceratophyllum demersum HOM05D005665 ORTHO05D007230 3.0e-97 359.4 254 68.1
PRCOL_00001033 Prasinoderma coloniale HOM05D005665 ORTHO05D007230 4.2e-91 339.0 318 50.6
unitig_21.g20852 Utricularia gibba HOM05D005665 ORTHO05D007230 2.1e-90 336.7 215 74.0
Cfa021982 Carpinus fangiana HOM05D005665 ORTHO05D007230 3.3e-80 302.8 344 44.2
Haze_26717 Corylus avellana HOM05D005665 ORTHO05D007230 2.4e-70 270.0 360 40.6
Thecc.05G195100 Theobroma cacao HOM05D005665 ORTHO05D007230 5.9e-53 212.2 123 74.8
Dinv40542 Davidia involucrata HOM05D005665 ORTHO05D007230 1.4e-30 137.9 82 81.7
MELO3C007292.2 Cucumis melo HOM05D005665 ORTHO05D039877 4.1e-30 136.3 89 76.4
TAR629G1936 Trochodendron aralioides HOM05D000151 ORTHO05D000074 9.2e-22 108.6 84 67.9
BcaB05g23333 Brassica carinata HOM05D005665 ORTHO05D039877 1.7e-20 104.4 68 73.5
Zm00001eb175420 Zea mays HOM05D005665 ORTHO05D007230 1.2e-13 81.6 47 78.7
DCAR_004083 Daucus carota HOM05D000799 ORTHO05D000629 3.5e-13 80.1 51 70.6
Thecc.05G194800 Theobroma cacao HOM05D005665 ORTHO05D007230 3.5e-13 80.1 68 63.2
Zm00001eb423550 Zea mays HOM05D005665 ORTHO05D007230 1.3e-12 78.2 41 85.4
SEGI_41581 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 1.7e-07 61.2 59 52.5


User provided reference genes

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