Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G3714 Fragaria x ananassa HOM05D005220 ORTHO05D006082 3.9e-128 461.5 232 100.0
FAN21G2192 Fragaria x ananassa HOM05D005220 ORTHO05D006082 1.5e-124 449.5 232 97.0
FAN25G3767 Fragaria x ananassa HOM05D005220 ORTHO05D006082 1.3e-123 446.4 232 96.6
FAN11G0817 Fragaria x ananassa HOM05D005220 ORTHO05D006082 4.2e-122 441.4 232 95.3
RcHm_v2.0_Chr5g0065291 Rosa chinensis HOM05D005220 ORTHO05D006082 9.4e-106 387.1 232 85.3
FvH4_3g36400 Fragaria vesca HOM05D005220 ORTHO05D006082 2.2e-86 322.8 168 94.0
Prupe.6G075200 Prunus persica HOM05D005220 ORTHO05D006082 2.7e-60 236.1 240 55.8
MD00G1013500 Malus domestica HOM05D005220 ORTHO05D006082 6.2e-49 198.4 204 53.4
MD03G1090800 Malus domestica HOM05D005220 ORTHO05D006082 8.1e-49 198.0 204 53.9
CiPaw.04G057500 Carya illinoinensis HOM05D005220 ORTHO05D006082 1.2e-20 104.4 184 37.0
Dinv33817 Davidia involucrata HOM05D005220 ORTHO05D006082 1.0e-19 101.3 183 37.2
Cfa007639 Carpinus fangiana HOM05D005220 ORTHO05D006082 1.8e-19 100.5 125 43.2
Haze_14458 Corylus avellana HOM05D005220 ORTHO05D006082 3.0e-19 99.8 134 40.3
Eucgr.I01975 Eucalyptus grandis HOM05D005220 ORTHO05D006082 3.9e-19 99.4 185 37.3
Hma1.2p1_0481F.1_g161950 Hydrangea macrophylla HOM05D005220 ORTHO05D006082 3.9e-19 99.4 188 36.7
Sc10g0003210 Simmondsia chinensis HOM05D005220 ORTHO05D006082 6.7e-19 98.6 180 33.9
Hund13159 Selenicereus undatus HOM05D005220 ORTHO05D006082 1.5e-18 97.4 188 35.6
Sabra17G0080700 Salix brachista HOM05D005220 ORTHO05D006082 1.7e-17 94.0 133 41.4
Lju41C5T5 Lonicera japonica HOM05D005220 ORTHO05D006082 2.2e-17 93.6 186 32.8
Nn3g17397 Nelumbo nucifera HOM05D005220 ORTHO05D006082 2.2e-17 93.6 166 38.6
Potri.017G091700 Populus trichocarpa HOM05D005220 ORTHO05D006082 2.2e-17 93.6 132 41.7
TAR622G0939 Trochodendron aralioides HOM05D005220 ORTHO05D006082 2.2e-17 93.6 140 41.4
Lj1g0008070 Lotus japonicus HOM05D005220 ORTHO05D006082 2.8e-17 93.2 185 35.7
MBI16_g09907_MAGBIO Magnolia biondii HOM05D005220 ORTHO05D006082 2.8e-17 93.2 178 36.0
Dinv34960 Davidia involucrata HOM05D005220 ORTHO05D006082 3.7e-17 92.8 195 33.3
TAR629G0541 Trochodendron aralioides HOM05D005220 ORTHO05D006082 4.8e-17 92.4 133 38.3
TWI34G1812 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 6.3e-17 92.0 180 33.3
Cc07_g04000 Coffea canephora HOM05D005220 ORTHO05D006082 8.2e-17 91.7 191 33.0
vmacro18154 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 1.1e-16 91.3 164 37.2
GSVIVG01011505001 Vitis vinifera HOM05D005220 ORTHO05D006082 1.4e-16 90.9 180 32.8
Hund02603 Selenicereus undatus HOM05D005220 ORTHO05D006082 1.8e-16 90.5 134 38.1
Glyma.08G242800 Glycine max HOM05D005220 ORTHO05D006082 4.1e-16 89.4 186 36.0
CDE10G0382 Ceratophyllum demersum HOM05D005220 ORTHO05D006082 1.2e-15 87.8 155 35.5
Lalb_Chr17g0337031 Lupinus albus HOM05D005220 ORTHO05D006082 1.5e-15 87.4 183 35.0
CSS0002601 Camellia sinensis var. sinensis HOM05D005220 ORTHO05D006082 2.6e-15 86.7 179 31.8
Cfa019301 Carpinus fangiana HOM05D005220 ORTHO05D006082 2.6e-15 86.7 128 39.1
Oeu010241.1 Olea europaea HOM05D005220 ORTHO05D006082 2.6e-15 86.7 163 35.6
Oeu062150.1 Olea europaea HOM05D005220 ORTHO05D006082 2.6e-15 86.7 115 40.9
Prupe.5G201200 Prunus persica HOM05D005220 ORTHO05D006082 2.6e-15 86.7 140 35.7
Glyma.18G265000 Glycine max HOM05D005220 ORTHO05D006082 3.4e-15 86.3 184 36.4
Rhsim10G0044300 Rhododendron simsii HOM05D005220 ORTHO05D006082 3.4e-15 86.3 138 39.1
Rhsim08G0074200 Rhododendron simsii HOM05D005220 ORTHO05D006082 4.5e-15 85.9 142 35.2
TAR374G0076 Trochodendron aralioides HOM05D005220 ORTHO05D006082 4.5e-15 85.9 130 37.7
TWI60G0661 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 5.9e-15 85.5 186 31.7
Actinidia07816 Actinidia chinensis HOM05D005220 ORTHO05D006082 7.7e-15 85.1 155 35.5
FAN13G1588 Fragaria x ananassa HOM05D006409 ORTHO05D008250 1.0e-14 84.7 119 41.2
Manes.01G098100 Manihot esculenta HOM05D005220 ORTHO05D006082 1.0e-14 84.7 123 35.8
QL10p018718 Quercus lobata HOM05D005220 ORTHO05D006082 1.0e-14 84.7 129 38.8
TAR636G1204 Trochodendron aralioides HOM05D005220 ORTHO05D006082 1.0e-14 84.7 118 41.5
AUR62021593 Chenopodium quinoa HOM05D005220 ORTHO05D006082 1.3e-14 84.3 164 35.4
Actinidia01983 Actinidia chinensis HOM05D005220 ORTHO05D006082 1.7e-14 84.0 160 33.8
FvH4_5g14276 Fragaria vesca HOM05D005220 ORTHO05D006082 2.2e-14 83.6 128 39.8
vmacro05657 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 2.9e-14 83.2 138 37.7
MSTRG.3015 Avicennia marina HOM05D005220 ORTHO05D006082 3.8e-14 82.8 189 32.8
FAN18G2755 Fragaria x ananassa HOM05D006409 ORTHO05D008250 3.8e-14 82.8 119 40.3
CiPaw.11G050100 Carya illinoinensis HOM05D005220 ORTHO05D006082 6.5e-14 82.0 144 34.0
DCAR_011050 Daucus carota HOM05D005220 ORTHO05D006082 6.5e-14 82.0 184 31.5
AUR62008499 Chenopodium quinoa HOM05D005220 ORTHO05D006082 8.5e-14 81.6 150 36.0
Ca_13809_v3 Cicer arietinum L. HOM05D005220 ORTHO05D006082 8.5e-14 81.6 163 34.4
ClCG06G015820 Citrullus lanatus HOM05D005220 ORTHO05D006082 1.1e-13 81.3 143 36.4
Ciclev10020317m.g Citrus clementina HOM05D005220 ORTHO05D006082 1.1e-13 81.3 141 37.6
Lsat_1_v5_gn_2_87740 Lactuca sativa HOM05D005220 ORTHO05D006082 1.1e-13 81.3 134 37.3
MD14G1208900 Malus domestica HOM05D005220 ORTHO05D006082 1.1e-13 81.3 133 36.8
FAN08G2293 Fragaria x ananassa HOM05D005220 ORTHO05D006082 2.5e-13 80.1 108 41.7
Nitab4.5_0000212g0170 Nicotiana tabacum HOM05D005220 ORTHO05D006082 3.2e-13 79.7 164 30.5
Aqoxy3G03583 Aquilegia oxysepala HOM05D005220 ORTHO05D006082 4.2e-13 79.3 121 37.2
Lsat_1_v5_gn_5_21940 Lactuca sativa HOM05D005220 ORTHO05D006082 4.2e-13 79.3 125 35.2
TPR.G12226 Trifolium pratense HOM05D005220 ORTHO05D006082 4.2e-13 79.3 164 34.8
THA.LOC104801327 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 9.4e-13 78.2 136 36.8
TAR371G0084 Trochodendron aralioides HOM05D005220 ORTHO05D006082 9.4e-13 78.2 170 31.8
Lj1g0005307 Lotus japonicus HOM05D005220 ORTHO05D006082 1.2e-12 77.8 124 37.1
Sed0003803 Sechium edule HOM05D005220 ORTHO05D006082 1.2e-12 77.8 166 31.3
VMungo1383G2795 Vigna mungo HOM05D005220 ORTHO05D006082 1.2e-12 77.8 136 36.0
HanXRQChr14g0448751 Helianthus annuus HOM05D005220 ORTHO05D006082 1.6e-12 77.4 156 34.6
Nitab4.5_0007954g0010 Nicotiana tabacum HOM05D005220 ORTHO05D006082 1.6e-12 77.4 164 29.9
RcHm_v2.0_Chr7g0182621 Rosa chinensis HOM05D005220 ORTHO05D006082 1.6e-12 77.4 189 29.6
Haze_07684 Corylus avellana HOM05D005220 ORTHO05D006082 2.1e-12 77.0 162 32.7
Duzib205G0201 Durio zibethinus HOM05D005220 ORTHO05D006082 2.1e-12 77.0 161 34.8
Phvul.008G035000 Phaseolus vulgaris HOM05D005220 ORTHO05D006082 2.1e-12 77.0 120 36.7
CsaV3_1G002740 Cucumis sativus L. HOM05D005220 ORTHO05D006082 7.9e-12 75.1 138 33.3
CAN.G979.12 Capsicum annuum HOM05D005220 ORTHO05D006082 1.0e-11 74.7 149 32.9
MELO3C017209.2 Cucumis melo HOM05D005220 ORTHO05D006082 1.0e-11 74.7 138 35.5
Lalb_Chr23g0273001 Lupinus albus HOM05D005220 ORTHO05D006082 1.0e-11 74.7 132 37.1
Psat7g133400 Pisum sativum HOM05D005220 ORTHO05D006082 1.0e-11 74.7 126 37.3
Cpa.g.sc94.10 Carica papaya HOM05D005220 ORTHO05D006082 1.4e-11 74.3 117 36.8
MSTRG.23894 Avicennia marina HOM05D005220 ORTHO05D006082 1.8e-11 73.9 239 26.8
Hund02604 Selenicereus undatus HOM05D005220 ORTHO05D006082 1.8e-11 73.9 146 37.0
GSVIVG01007924001 Vitis vinifera HOM05D005220 ORTHO05D006082 2.3e-11 73.6 119 37.8
Sed0005854 Sechium edule HOM05D005220 ORTHO05D006082 3.9e-11 72.8 138 32.6
AL5G19390 Arabidopsis lyrata HOM05D005220 ORTHO05D006082 5.1e-11 72.4 121 35.5
HanXRQChr05g0157201 Helianthus annuus HOM05D005220 ORTHO05D006082 8.8e-11 71.6 132 34.8
Lj1g0011465 Lotus japonicus HOM05D005220 ORTHO05D006082 1.5e-10 70.9 133 33.1
SalBow1G1470 Salvia bowleyana HOM05D005220 ORTHO05D006082 1.5e-10 70.9 208 28.8
Sc04g0003090 Simmondsia chinensis HOM05D005220 ORTHO05D006082 1.5e-10 70.9 118 34.7
Thecc.03G097300 Theobroma cacao HOM05D005220 ORTHO05D006082 1.5e-10 70.9 198 29.8
ATR0064G106 Amborella trichopoda HOM05D005220 ORTHO05D006082 2.0e-10 70.5 154 31.8
Gohir.D07G074000 Gossypium hirsutum HOM05D005220 ORTHO05D006082 2.0e-10 70.5 116 37.9
Gorai.001G078200 Gossypium raimondii HOM05D005220 ORTHO05D006082 2.0e-10 70.5 116 37.9
Medtr3g023750 Medicago truncatula HOM05D005220 ORTHO05D006082 2.0e-10 70.5 134 34.3
arahy.Tifrunner.gnm1.ann1.Y71GGS Arachis hypogaea HOM05D005220 ORTHO05D006082 2.6e-10 70.1 102 36.3
Peaxi162Scf00629g00420 Petunia axillaris HOM05D005220 ORTHO05D006082 2.6e-10 70.1 166 28.3
Gorai.008G196900 Gossypium raimondii HOM05D005220 ORTHO05D006082 3.3e-10 69.7 144 33.3
HPP92_020440 Vanilla planifolia HOM05D005220 ORTHO05D006082 3.3e-10 69.7 163 30.7
PSO017G3052 Papaver somniferum HOM05D005220 ORTHO05D006082 4.4e-10 69.3 157 29.9
arahy.Tifrunner.gnm1.ann1.UWUI2N Arachis hypogaea HOM05D005220 ORTHO05D006082 7.4e-10 68.6 102 36.3
Gohir.D12G183566 Gossypium hirsutum HOM05D005220 ORTHO05D006082 7.4e-10 68.6 144 32.6
HPP92_009883 Vanilla planifolia HOM05D005220 ORTHO05D006082 7.4e-10 68.6 112 33.9
COL.COLO4_22223 Corchorus olitorius HOM05D005220 ORTHO05D006082 1.3e-09 67.8 113 37.2
EL10Ac5g11101 Beta vulgaris HOM05D005220 ORTHO05D006082 2.2e-09 67.0 165 31.5
PGSC0003DMG400025138 Solanum tuberosum HOM05D005220 ORTHO05D006082 2.2e-09 67.0 121 35.5
THA.LOC104818337 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 2.2e-09 67.0 110 37.3
Thhalv10005570m.g Eutrema salsugineum HOM05D005220 ORTHO05D006082 2.8e-09 66.6 137 35.8
HanXRQChr14g0426851 Helianthus annuus HOM05D005220 ORTHO05D006082 2.8e-09 66.6 112 33.9
PSO302G0007 Papaver somniferum HOM05D005220 ORTHO05D006082 2.8e-09 66.6 157 29.3
Os10g0324600 Oryza sativa ssp. japonica HOM05D005220 ORTHO05D006082 3.7e-09 66.2 174 29.3
Lsat_1_v5_gn_5_21960 Lactuca sativa HOM05D005220 ORTHO05D006082 6.3e-09 65.5 110 33.6
Ah.11g047990 Amaranthus hybridus HOM05D005220 ORTHO05D006082 1.4e-08 64.3 135 33.3
Solyc02g067070.4 Solanum lycopersicum HOM05D005220 ORTHO05D006082 1.4e-08 64.3 127 33.9
ATR0681G067 Amborella trichopoda HOM05D005220 ORTHO05D006082 1.8e-08 63.9 141 31.2
Sopen02g016260 Solanum pennellii HOM05D005220 ORTHO05D006082 2.4e-08 63.5 127 33.9
ECA238G3864 Erigeron canadensis HOM05D005220 ORTHO05D006082 3.1e-08 63.2 158 31.0
PSO478G1432 Papaver somniferum HOM05D005220 ORTHO05D006082 3.1e-08 63.2 157 28.7
Dinv38787 Davidia involucrata HOM05D005220 ORTHO05D006082 5.3e-08 62.4 79 43.0
ECA246G3789 Erigeron canadensis HOM05D005220 ORTHO05D006082 1.2e-07 61.2 121 29.8
CAN.G979.11 Capsicum annuum HOM05D005220 ORTHO05D006082 1.5e-07 60.8 142 28.9
SGA_v2.0_scaffold52G19178 Striga asiatica HOM05D005220 ORTHO05D006082 2.0e-07 60.5 149 27.5
arahy.Tifrunner.gnm1.ann1.XVT01H Arachis hypogaea HOM05D005220 ORTHO05D006082 2.6e-07 60.1 165 27.3
Gohir.A12G180900 Gossypium hirsutum HOM05D005220 ORTHO05D006082 4.5e-07 59.3 115 32.2
Migut.H00644 Erythranthe guttata HOM05D005220 ORTHO05D006082 5.9e-07 58.9 69 43.5
arahy.Tifrunner.gnm1.ann1.8S7SHD Arachis hypogaea HOM05D005220 ORTHO05D006082 7.7e-07 58.5 144 27.8
Medtr5g097950 Medicago truncatula HOM05D005220 ORTHO05D006082 1.7e-06 57.4 129 29.5
SEGI_11425 Sequoiadendron giganteum HOM05D015783 ORTHO05D021004 3.8e-06 56.2 108 31.5
SEGI_30657 Sequoiadendron giganteum HOM05D015783 ORTHO05D021004 3.8e-06 56.2 108 31.5
SEGI_34434 Sequoiadendron giganteum HOM05D015783 ORTHO05D021004 3.8e-06 56.2 108 31.5
THA.LOC104818515 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 6.5e-06 55.5 93 39.8


User provided reference genes

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