Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G3700 Fragaria x ananassa HOM05D005280 ORTHO05D006253 6.7e-137 491.1 336 100.0
MD10G1279400 Malus domestica HOM05D005280 ORTHO05D006253 8.8e-113 411.0 314 93.3
MD05G1300300 Malus domestica HOM05D005280 ORTHO05D006253 2.0e-112 409.8 316 91.8
Prupe.4G062000 Prunus persica HOM05D005280 ORTHO05D006253 2.6e-112 409.5 314 92.4
PGR042G3394 Punica granatum HOM05D005280 ORTHO05D006253 1.2e-104 384.0 309 87.7
Manes.17G056200 Manihot esculenta HOM05D005280 ORTHO05D006253 1.7e-103 380.2 309 87.4
TWI38G0304 Tripterygium wilfordii HOM05D005280 ORTHO05D006253 3.7e-103 379.0 309 86.7
AUR62015144 Chenopodium quinoa HOM05D005280 ORTHO05D006253 1.6e-101 373.6 309 84.8
AUR62017603 Chenopodium quinoa HOM05D005280 ORTHO05D006253 2.0e-101 373.2 309 84.5
Lalb_Chr20g0117481 Lupinus albus HOM05D005280 ORTHO05D006253 4.5e-101 372.1 309 85.4
Ah.01g013480 Amaranthus hybridus HOM05D005280 ORTHO05D006253 5.9e-101 371.7 309 83.8
Sc05g0007070 Simmondsia chinensis HOM05D005280 ORTHO05D006253 1.7e-100 370.2 309 85.1
ECA236G4327 Erigeron canadensis HOM05D005280 ORTHO05D006253 3.9e-100 369.0 309 84.8
Lj6g0027668 Lotus japonicus HOM05D005280 ORTHO05D006253 1.1e-99 367.5 309 85.4
SHI28515 Sapria himalayana HOM05D005280 ORTHO05D006253 3.3e-99 365.9 309 85.8
QL05p047377 Quercus lobata HOM05D005280 ORTHO05D006253 7.3e-99 364.8 309 82.8
Duzib160G0285 Durio zibethinus HOM05D005280 ORTHO05D006253 1.2e-98 364.0 309 84.5
HanXRQChr05g0139841 Helianthus annuus HOM05D005280 ORTHO05D006253 4.7e-98 362.1 308 84.1
PGSC0003DMG400008719 Solanum tuberosum HOM05D005280 ORTHO05D006253 3.7e-95 352.4 309 82.5
Solyc03g062940.3 Solanum lycopersicum HOM05D005280 ORTHO05D006253 4.9e-95 352.1 309 82.5
Sopen03g015240 Solanum pennellii HOM05D005280 ORTHO05D006253 4.9e-95 352.1 309 82.5
Peaxi162Scf00871g00047 Petunia axillaris HOM05D005280 ORTHO05D006253 6.4e-95 351.7 309 82.5
PGSC0003DMG400009000 Solanum tuberosum HOM05D005280 ORTHO05D006253 8.3e-95 351.3 309 81.9
CAN.G206.30 Capsicum annuum HOM05D005280 ORTHO05D006253 9.2e-94 347.8 309 81.2
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.2e-93 347.4 309 80.6
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.6e-93 347.1 309 80.6
AT1G29260 Arabidopsis thaliana HOM05D005280 ORTHO05D006253 2.0e-93 346.7 309 83.5
Haze_06226 Corylus avellana HOM05D005280 ORTHO05D006253 6.0e-93 345.1 309 83.8
Carub.0001s2739 Capsella rubella HOM05D005280 ORTHO05D006253 1.3e-87 327.4 309 80.6
FAN25G0161 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.7e-87 327.0 254 99.6
Potri.004G057600 Populus trichocarpa HOM05D005280 ORTHO05D006253 2.9e-87 326.2 309 80.3
FAN11G1284 Fragaria x ananassa HOM05D005280 ORTHO05D006253 3.7e-87 325.9 254 99.2
FAN21G3704 Fragaria x ananassa HOM05D005280 ORTHO05D006253 4.9e-87 325.5 253 99.6
FvH4_3g07730 Fragaria vesca HOM05D005280 ORTHO05D006253 6.4e-87 325.1 254 99.2
SGA_v2.0_scaffold1G00053 Striga asiatica HOM05D005280 ORTHO05D006253 4.1e-86 322.4 309 79.0
Dinv16775 Davidia involucrata HOM05D005280 ORTHO05D006253 9.2e-86 321.2 281 86.1
CARHR028510 Cardamine hirsuta HOM05D005280 ORTHO05D006253 2.7e-85 319.7 309 80.3
RcHm_v2.0_Chr5g0010881 Rosa chinensis HOM05D005280 ORTHO05D006253 6.0e-85 318.5 255 98.0
Lsat_1_v5_gn_7_24160 Lactuca sativa HOM05D005280 ORTHO05D006253 7.8e-85 318.2 309 78.3
Actinidia39510 Actinidia chinensis HOM05D005280 ORTHO05D006253 2.1e-82 310.1 309 77.7
CANSAT80G2107 Cannabis sativa HOM05D005280 ORTHO05D006253 6.8e-81 305.1 309 78.6
Migut.M01035 Erythranthe guttata HOM05D005280 ORTHO05D006253 6.8e-81 305.1 309 78.0
Thecc.06G170100 Theobroma cacao HOM05D005280 ORTHO05D006253 1.7e-79 300.4 309 77.3
CSS0022801 Camellia sinensis var. sinensis HOM05D005280 ORTHO05D006253 2.9e-79 299.7 315 75.2
Lj1A206T60 Lonicera japonica HOM05D005280 ORTHO05D006253 1.9e-78 297.0 309 76.1
DCAR_007943 Daucus carota HOM05D005280 ORTHO05D006253 7.1e-78 295.0 309 75.7
EL10Ac9g22853 Beta vulgaris HOM05D005280 ORTHO05D006253 1.2e-77 294.3 309 77.0
Gohir.D10G037400 Gossypium hirsutum HOM05D005280 ORTHO05D006253 3.9e-76 289.3 309 75.4
Gohir.A10G036800 Gossypium hirsutum HOM05D005280 ORTHO05D006253 5.1e-76 288.9 309 75.4
Gorai.011G039400 Gossypium raimondii HOM05D005280 ORTHO05D006253 1.1e-75 287.7 309 75.4
Duzib192G0183 Durio zibethinus HOM05D005280 ORTHO05D006253 2.5e-75 286.6 309 75.7
BolC3t19816H Brassica oleracea HOM05D005280 ORTHO05D006253 2.8e-74 283.1 309 75.7
AL1G42940 Arabidopsis lyrata HOM05D005280 ORTHO05D006253 3.6e-74 282.7 309 75.4
Sabra04G0037300 Salix brachista HOM05D005280 ORTHO05D006253 1.5e-72 277.3 249 90.4
CiPaw.10G059400 Carya illinoinensis HOM05D005280 ORTHO05D006253 2.6e-72 276.6 254 88.6
arahy.Tifrunner.gnm1.ann1.8U8ZZM Arachis hypogaea HOM05D005280 ORTHO05D006253 9.9e-72 274.6 258 86.0
arahy.Tifrunner.gnm1.ann1.IM81E3 Arachis hypogaea HOM05D005280 ORTHO05D006253 9.9e-72 274.6 258 86.0
Sabra11G0048200 Salix brachista HOM05D005280 ORTHO05D006253 1.3e-71 274.2 266 80.8
Ciclev10015974m.g Citrus clementina HOM05D005280 ORTHO05D006253 1.7e-71 273.9 252 88.1
Dinv40681 Davidia involucrata HOM05D005280 ORTHO05D006253 1.7e-71 273.9 250 88.0
Atru.chr10.1658 Acer truncatum HOM05D005280 ORTHO05D006253 3.8e-71 272.7 252 88.5
Cpa.g.sc7.74 Carica papaya HOM05D005280 ORTHO05D006253 3.8e-71 272.7 309 74.4
Cfa000612 Carpinus fangiana HOM05D005280 ORTHO05D006253 1.1e-70 271.2 257 86.0
MELO3C007211.2 Cucumis melo HOM05D005280 ORTHO05D006253 1.4e-70 270.8 250 88.4
Phvul.006G175800 Phaseolus vulgaris HOM05D005280 ORTHO05D006253 3.2e-70 269.6 254 85.8
ClCG01G023770 Citrullus lanatus HOM05D005280 ORTHO05D006253 4.2e-70 269.2 250 88.0
CsaV3_6G050930 Cucumis sativus L. HOM05D005280 ORTHO05D006253 4.2e-70 269.2 250 88.0
CDE10G0374 Ceratophyllum demersum HOM05D005280 ORTHO05D006253 5.4e-70 268.9 308 72.4
Glyma.13G229400 Glycine max HOM05D005280 ORTHO05D006253 7.1e-70 268.5 255 84.7
Manes.16G040400 Manihot esculenta HOM05D005280 ORTHO05D006253 7.1e-70 268.5 249 88.0
Psat1g197880 Pisum sativum HOM05D005280 ORTHO05D006253 1.2e-69 267.7 249 87.1
Ca_00439_v3 Cicer arietinum L. HOM05D005280 ORTHO05D006253 4.6e-69 265.8 254 84.3
THA.LOC104812639 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 6.0e-69 265.4 253 85.8
Medtr2g016160 Medicago truncatula HOM05D005280 ORTHO05D006253 1.3e-68 264.2 253 84.6
vmacro16064 Vaccinium macrocarpon HOM05D005280 ORTHO05D006253 2.3e-68 263.5 245 89.4
THA.LOC104804949 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 8.7e-68 261.5 252 84.9
Rhsim02G0143200 Rhododendron simsii HOM05D005280 ORTHO05D006253 1.1e-67 261.2 245 88.6
Aa31LG6G6330 Aethionema arabicum HOM05D005280 ORTHO05D006253 2.5e-67 260.0 252 85.3
Thhalv10008237m.g Eutrema salsugineum HOM05D005280 ORTHO05D006253 1.6e-66 257.3 252 84.9
Hma1.2p1_1912F.1_g307320 Hydrangea macrophylla HOM05D005280 ORTHO05D006253 1.6e-66 257.3 144 83.3
Sp1g25120 Schrenkiella parvula HOM05D005280 ORTHO05D006253 1.6e-66 257.3 251 85.7
BcaC05g26943 Brassica carinata HOM05D005280 ORTHO05D006253 2.1e-66 256.9 253 84.2
A09p37140 Brassica napus HOM05D005280 ORTHO05D006253 2.1e-66 256.9 253 84.2
C05p27910 Brassica napus HOM05D005280 ORTHO05D006253 2.1e-66 256.9 253 84.2
BolC5t31517H Brassica oleracea HOM05D005280 ORTHO05D006253 2.1e-66 256.9 253 84.2
BraA09t39230Z Brassica rapa HOM05D005280 ORTHO05D006253 2.1e-66 256.9 253 84.2
VMungo0540G1202 Vigna mungo HOM05D005280 ORTHO05D006253 1.5e-64 250.8 144 81.2
Sed0011601 Sechium edule HOM05D005280 ORTHO05D006253 2.0e-64 250.4 144 81.9
HPP92_008751 Vanilla planifolia HOM05D005280 ORTHO05D006253 7.6e-64 248.4 253 81.8
Glyma.15G083100 Glycine max HOM05D005280 ORTHO05D006253 1.3e-63 247.7 144 79.2
COL.COLO4_31288 Corchorus olitorius HOM05D005280 ORTHO05D006253 4.9e-63 245.7 144 80.6
BcaC01g00082 Brassica carinata HOM05D005280 ORTHO05D006253 8.4e-63 245.0 144 79.9
C03p75590 Brassica napus HOM05D005280 ORTHO05D006253 8.4e-63 245.0 144 79.9
BraA08t34477Z Brassica rapa HOM05D005280 ORTHO05D006253 1.9e-62 243.8 144 79.2
Cc02_g15040 Coffea canephora HOM05D005280 ORTHO05D006253 1.9e-62 243.8 146 79.5
TAR629G2088 Trochodendron aralioides HOM05D005280 ORTHO05D006253 1.9e-62 243.8 146 76.7
unitig_699.g19366 Utricularia gibba HOM05D005280 ORTHO05D006253 2.4e-62 243.4 250 82.0
BcaB03g12145 Brassica carinata HOM05D005280 ORTHO05D006253 3.2e-62 243.0 144 79.9
BcaB07g32507 Brassica carinata HOM05D005280 ORTHO05D006253 3.2e-62 243.0 144 78.5
Nn1g04427 Nelumbo nucifera HOM05D005280 ORTHO05D006253 3.2e-62 243.0 146 77.4
MBI05_g10770_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 5.4e-62 242.3 146 74.7
MBI07_g43934_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 5.4e-62 242.3 146 75.3
PSO229G0003 Papaver somniferum HOM05D005280 ORTHO05D006253 7.1e-62 241.9 144 78.5
CBR_g23503 Chara braunii HOM05D005280 ORTHO05D006253 9.3e-62 241.5 308 64.3
Aqoxy170s003 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 2.7e-61 240.0 146 76.0
Aqoxy7G03216 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 2.7e-61 240.0 146 76.0
PSO675G8759 Papaver somniferum HOM05D005280 ORTHO05D006253 4.6e-61 239.2 144 77.1
MSTRG.7412 Avicennia marina HOM05D005280 ORTHO05D006253 6.6e-60 235.3 145 75.2
SEGI_31924 Sequoiadendron giganteum HOM05D005280 ORTHO05D006253 9.6e-59 231.5 310 66.1
PRCOL_00004365 Prasinoderma coloniale HOM05D005280 ORTHO05D006253 1.7e-55 220.7 324 54.9
Pp3c17_8040 Physcomitrium patens HOM05D005280 ORTHO05D006253 1.1e-54 218.0 310 63.5
Mapoly0030s0014 Marchantia polymorpha HOM05D005280 ORTHO05D006253 1.3e-52 211.1 310 62.6
SMO119G0322 Selaginella moellendorffii HOM05D005280 ORTHO05D006253 1.8e-49 200.7 291 66.7
AagrBONN_evm.TU.Sc2ySwM_117.3414 Anthoceros agrestis HOM05D005280 ORTHO05D006253 2.4e-49 200.3 306 64.1
A08p25250 Brassica napus HOM05D005280 ORTHO05D006253 7.1e-46 188.7 144 64.6
Potri.011G066600 Populus trichocarpa HOM05D005280 ORTHO05D006253 9.3e-46 188.3 198 81.8
Zm00001eb238680 Zea mays HOM05D005280 ORTHO05D006253 3.5e-45 186.4 147 60.5
PSO782G3364 Papaver somniferum HOM05D005280 ORTHO05D006253 2.3e-44 183.7 116 73.3
Cre17.g730200 Chlamydomonas reinhardtii HOM05D005280 ORTHO05D006253 5.1e-44 182.6 309 57.3
AUR62034161 Chenopodium quinoa HOM05D005280 ORTHO05D006253 2.4e-41 173.7 306 43.1
Aqoxy1G02047 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 3.8e-39 166.4 107 73.8
Pp3c15_2410 Physcomitrium patens HOM05D005280 ORTHO05D006253 2.5e-38 163.7 298 58.7
TPR.G11693 Trifolium pratense HOM05D005280 ORTHO05D006253 2.2e-34 150.6 84 79.8
MBI16_g15539_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 2.6e-32 143.7 311 32.5
ATR0706G060 Amborella trichopoda HOM05D005280 ORTHO05D006253 2.5e-30 137.1 115 60.9
MCO15G120 Micromonas commoda HOM05D005280 ORTHO05D006253 7.2e-30 135.6 108 59.3
MBI16_g15538_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 9.7e-27 125.2 311 29.3
AUR62014277 Chenopodium quinoa HOM05D005280 ORTHO05D006253 1.7e-23 114.4 84 60.7
Dinv41375 Davidia involucrata HOM05D000140 ORTHO05D000087 4.7e-13 79.7 121 42.1
FAN14G0286 Fragaria x ananassa HOM05D005280 ORTHO05D019446 1.0e-12 78.6 118 44.1
Hma1.2p1_1912F.1_g307330 Hydrangea macrophylla HOM05D019969 ORTHO05D019446 5.7e-11 72.8 77 49.4
Aqoxy1G02046 Aquilegia oxysepala HOM05D019969 ORTHO05D019446 4.8e-10 69.7 73 47.9
MBI16_g13364_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 9.1e-09 65.5 295 24.7
VMungo1383G1864 Vigna mungo HOM05D005280 ORTHO05D006253 1.6e-08 64.7 37 75.7
MBI06_g08594_MAGBIO Magnolia biondii HOM05D038649 ORTHO05D006253 3.5e-08 63.5 71 43.7
arahy.Tifrunner.gnm1.ann1.HIJE33 Arachis hypogaea HOM05D005280 ORTHO05D006253 1.0e-07 62.0 61 45.9
MBI16_g04072_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.3e-07 61.6 83 48.2
VMungo0331G0944 Vigna mungo HOM05D005280 ORTHO05D006253 6.5e-07 59.3 36 72.2
MBI06_g08595_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 8.5e-07 58.9 93 36.6
Ca_20890_v3 Cicer arietinum L. HOM05D003405 ORTHO05D003920 9.4e-06 55.5 91 34.1


User provided reference genes

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