Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 4.8e-89 331.3 183 100.0
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 3.4e-66 255.4 183 73.2
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.6e-63 246.5 163 77.3
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 2.1e-60 236.1 183 73.2
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 2.8e-60 235.7 184 79.9
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 1.7e-57 226.5 186 74.7
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 6.6e-46 188.0 163 57.7
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 9.6e-45 184.1 171 63.2
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 1.7e-41 173.3 172 57.0
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 2.2e-41 172.9 169 55.0
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 2.2e-41 172.9 169 54.4
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 8.4e-41 171.0 164 54.9
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 1.1e-40 170.6 163 53.4
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 1.1e-40 170.6 165 61.8
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 3.2e-40 169.1 162 53.1
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 4.2e-40 168.7 186 48.9
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 7.1e-40 167.9 164 53.7
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 7.1e-40 167.9 164 54.3
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 7.1e-40 167.9 166 50.6
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 9.3e-40 167.5 167 53.3
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 1.2e-39 167.2 164 53.0
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 1.2e-39 167.2 167 53.3
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 1.2e-39 167.2 164 53.0
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 1.2e-39 167.2 149 56.4
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 1.6e-39 166.8 169 52.7
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 2.1e-39 166.4 164 54.3
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 2.1e-39 166.4 162 58.0
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 3.5e-39 165.6 166 53.6
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 3.5e-39 165.6 162 51.9
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 4.6e-39 165.2 171 50.3
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 7.8e-39 164.5 163 51.5
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 7.8e-39 164.5 164 53.7
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 1.3e-38 163.7 165 54.5
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 1.3e-38 163.7 163 51.5
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 1.3e-38 163.7 158 53.2
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.7e-38 163.3 168 50.0
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 2.3e-38 162.9 142 56.3
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 3.9e-38 162.2 167 57.5
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 3.9e-38 162.2 165 57.0
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 5.1e-38 161.8 164 54.9
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 6.6e-38 161.4 166 50.6
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 8.7e-38 161.0 166 50.0
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 1.1e-37 160.6 163 50.9
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 1.5e-37 160.2 115 64.3
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 1.5e-37 160.2 166 50.0
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 1.9e-37 159.8 167 55.7
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 1.9e-37 159.8 162 54.9
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 3.3e-37 159.1 155 55.5
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 3.3e-37 159.1 166 50.0
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 3.3e-37 159.1 160 56.2
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 1.3e-36 157.1 142 54.9
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 1.3e-36 157.1 162 51.2
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 1.3e-36 157.1 150 54.0
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 2.1e-36 156.4 115 62.6
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 3.6e-36 155.6 164 49.4
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 4.8e-36 155.2 166 51.2
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 4.8e-36 155.2 160 55.0
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 4.8e-36 155.2 148 54.1
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 1.1e-35 154.1 170 54.1
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 1.1e-35 154.1 170 54.1
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 1.1e-35 154.1 170 54.1
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.8e-35 153.3 168 48.2
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 1.8e-35 153.3 153 51.6
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 2.4e-35 152.9 162 49.4
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 2.4e-35 152.9 158 51.3
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 4.0e-35 152.1 145 50.3
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 4.0e-35 152.1 139 54.7
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 6.9e-35 151.4 146 57.5
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 9.0e-35 151.0 191 48.7
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 1.5e-34 150.2 153 50.3
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 3.4e-34 149.1 164 53.0
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 3.4e-34 149.1 109 62.4
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 3.4e-34 149.1 110 64.5
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 4.5e-34 148.7 167 52.7
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 4.5e-34 148.7 164 48.2
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 1.3e-33 147.1 160 52.5
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 1.7e-33 146.7 161 52.8
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 2.2e-33 146.4 106 62.3
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 3.8e-33 145.6 108 64.8
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 6.4e-33 144.8 109 62.4
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 6.4e-33 144.8 148 54.7
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 8.4e-33 144.4 142 56.3
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 8.4e-33 144.4 142 56.3
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 8.4e-33 144.4 164 51.8
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 1.1e-32 144.1 108 62.0
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 1.1e-32 144.1 145 52.4
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 1.1e-32 144.1 150 52.7
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 1.9e-32 143.3 167 50.9
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 2.4e-32 142.9 152 54.6
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 2.4e-32 142.9 146 54.1
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 4.2e-32 142.1 153 54.2
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 5.4e-32 141.7 153 51.6
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 5.4e-32 141.7 166 50.6
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 5.4e-32 141.7 164 51.8
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 7.1e-32 141.4 107 61.7
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 7.1e-32 141.4 164 52.4
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 7.1e-32 141.4 142 52.8
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 9.3e-32 141.0 109 60.6
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 9.3e-32 141.0 164 51.2
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 9.3e-32 141.0 164 51.8
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 9.3e-32 141.0 110 57.3
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 1.2e-31 140.6 153 52.3
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 1.2e-31 140.6 109 60.6
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 2.1e-31 139.8 164 51.8
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 4.6e-31 138.7 155 52.3
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 1.8e-30 136.7 105 61.0
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 3.9e-30 135.6 159 47.8
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 6.7e-30 134.8 169 48.5
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 8.7e-30 134.4 169 47.9
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 1.9e-29 133.3 264 38.6
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 1.9e-29 133.3 148 50.0
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 2.1e-28 129.8 167 44.9
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 2.8e-28 129.4 163 46.0
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 3.7e-28 129.0 149 48.3
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 4.8e-28 128.6 107 65.4
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 6.2e-28 128.3 101 59.4
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 3.8e-25 119.0 94 58.5
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 8.4e-25 117.9 95 60.0
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 3.2e-24 115.9 110 52.7
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 1.2e-23 114.0 115 47.8
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 2.7e-23 112.8 106 54.7
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 3.5e-23 112.5 110 50.0
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 6.0e-23 111.7 53 83.0
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 6.0e-23 111.7 51 88.2
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.0e-22 110.9 174 37.9
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 6.2e-20 101.7 127 43.3
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 9.0e-19 97.8 113 49.6
Oeu002454.1 Olea europaea HOM05D005372 ORTHO05D006593 4.5e-18 95.5 91 50.5
Mapoly0002s0283 Marchantia polymorpha HOM05D005372 ORTHO05D006593 5.5e-16 88.6 108 39.8
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 6.0e-15 85.1 78 64.1
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 2.3e-14 83.2 108 40.7
BraA10t43707Z Brassica rapa HOM05D005372 ORTHO05D006593 3.0e-14 82.8 93 48.4
COL.COLO4_19070 Corchorus olitorius HOM05D005372 ORTHO05D006593 3.0e-14 82.8 185 37.3
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 1.9e-13 80.1 98 53.1
Pp3c9_8860 Physcomitrium patens HOM05D005372 ORTHO05D006593 1.9e-13 80.1 103 38.8
CBR_g8222 Chara braunii HOM05D005372 ORTHO05D006593 4.5e-10 68.9 81 43.2
vmacro03009 Vaccinium macrocarpon HOM05D005372 ORTHO05D006593 1.3e-09 67.4 98 40.8
SMO111G0201 Selaginella moellendorffii HOM05D005372 ORTHO05D006593 9.4e-08 61.2 81 39.5
Zm00001eb217580 Zea mays HOM05D000360 ORTHO05D000234 9.4e-08 61.2 41 61.0
Zm00001eb023370 Zea mays HOM05D000798 ORTHO05D000659 2.7e-07 59.7 49 53.1
Dinv20930 Davidia involucrata HOM05D005372 ORTHO05D006593 1.8e-06 57.0 72 40.3
Dinv21014 Davidia involucrata HOM05D005372 ORTHO05D006593 3.0e-06 56.2 71 40.8


User provided reference genes

Program Settings