Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 7.4e-245 850.1 436 100.0
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 1.2e-242 842.8 436 99.1
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 2.6e-242 841.6 436 99.1
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 9.4e-240 833.2 437 97.9
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 2.9e-225 785.0 437 93.1
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 3.3e-200 701.8 440 81.4
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 1.2e-199 699.9 416 83.4
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 3.1e-190 668.7 418 78.2
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 8.9e-190 667.2 432 77.8
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 1.2e-189 666.8 428 78.3
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 2.6e-189 665.6 428 77.8
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 4.4e-189 664.8 428 77.8
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 7.5e-189 664.1 428 77.6
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 7.5e-189 664.1 422 78.4
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 4.9e-188 661.4 422 80.1
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 1.1e-187 660.2 436 76.8
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 3.2e-187 658.7 427 77.5
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 7.0e-187 657.5 419 77.3
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 2.7e-186 655.6 426 77.0
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 2.7e-186 655.6 426 76.3
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 2.7e-186 655.6 428 76.9
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 1.0e-185 653.7 407 78.9
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 5.0e-185 651.4 428 76.2
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 5.6e-184 647.9 427 75.4
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 9.5e-184 647.1 426 75.6
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 2.8e-183 645.6 407 78.1
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 3.6e-183 645.2 426 76.8
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 4.7e-183 644.8 412 77.7
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.4e-182 643.3 402 79.6
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 1.8e-182 642.9 406 77.1
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 5.2e-182 641.3 402 79.4
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 1.2e-181 640.2 401 77.8
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 2.0e-181 639.4 412 77.4
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 3.4e-181 638.6 400 78.2
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 5.8e-181 637.9 404 77.2
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 2.9e-180 635.6 407 78.1
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 8.3e-180 634.0 406 77.3
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 1.4e-179 633.3 401 78.6
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 2.4e-179 632.5 412 76.9
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 3.2e-179 632.1 412 76.2
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 7.0e-179 630.9 447 72.7
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 7.0e-179 630.9 432 73.8
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 2.7e-178 629.0 437 72.8
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 3.5e-178 628.6 420 74.3
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 3.5e-178 628.6 423 74.5
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 6.0e-178 627.9 419 74.0
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 6.0e-178 627.9 416 75.0
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 5.1e-177 624.8 419 74.5
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 6.6e-177 624.4 416 75.0
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 1.1e-176 623.6 400 76.2
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 1.1e-176 623.6 436 71.1
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 1.9e-176 622.9 405 75.3
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 2.5e-176 622.5 401 75.6
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 3.3e-176 622.1 438 72.8
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 3.3e-176 622.1 422 71.8
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 7.3e-176 620.9 430 71.9
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 9.5e-176 620.5 420 73.3
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 9.5e-176 620.5 391 78.0
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 1.6e-175 619.8 425 72.9
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 2.1e-175 619.4 376 81.9
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 3.6e-175 618.6 417 72.7
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 1.1e-174 617.1 430 71.2
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 1.4e-174 616.7 392 76.8
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 1.4e-174 616.7 431 71.0
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 1.2e-173 613.6 408 74.5
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 1.5e-173 613.2 403 73.9
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 2.6e-173 612.5 417 72.2
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 4.4e-173 611.7 414 73.7
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 1.7e-172 609.8 443 69.5
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 3.7e-172 608.6 420 72.9
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 4.9e-172 608.2 420 72.9
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 9.2e-171 604.0 420 72.6
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 9.2e-171 604.0 420 72.6
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 2.3e-169 599.4 407 73.5
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 2.3e-169 599.4 416 72.6
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 1.1e-168 597.0 405 70.6
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 8.1e-167 590.9 411 70.6
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 5.2e-166 588.2 402 73.6
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 1.5e-165 586.6 411 72.0
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 7.6e-165 584.3 456 67.8
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 3.8e-164 582.0 362 79.3
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 1.0e-161 573.9 573 56.5
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.3e-161 573.5 431 65.9
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 5.6e-160 568.2 415 66.0
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 2.1e-159 566.2 395 73.7
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 6.2e-159 564.7 381 74.0
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 1.4e-158 563.5 396 69.7
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.5e-157 560.1 395 72.4
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 2.6e-157 559.3 431 67.1
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 7.8e-154 547.7 446 65.5
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 9.6e-152 540.8 375 73.9
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 5.3e-150 535.0 406 67.0
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 2.9e-148 529.3 331 77.3
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 1.3e-145 520.4 387 65.6
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 5.6e-144 515.0 381 68.2
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 1.4e-142 510.4 407 61.9
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 1.8e-142 510.0 420 62.4
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 3.1e-142 509.2 403 61.3
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 3.1e-142 509.2 344 70.3
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 5.3e-142 508.4 323 78.6
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 2.0e-141 506.5 420 59.3
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 2.3e-137 493.0 329 71.7
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 8.7e-129 464.5 355 69.9
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 4.3e-128 462.2 421 60.1
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 9.4e-123 444.5 334 65.6
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 3.9e-121 439.1 329 67.8
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 3.8e-116 422.5 367 55.6
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 1.1e-112 411.0 299 70.2
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 1.1e-110 404.4 263 75.3
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 7.7e-109 398.3 277 72.6
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 4.4e-104 382.5 336 60.1
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 8.2e-103 378.3 320 59.7
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 8.0e-98 361.7 405 48.6
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 4.0e-97 359.4 227 75.3
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 5.7e-96 355.5 397 47.1
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 5.5e-91 339.0 399 45.4
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 9.5e-67 258.5 259 57.1
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 6.8e-65 252.3 277 48.4
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 2.9e-63 246.9 170 67.6
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 5.1e-60 236.1 148 78.4
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 1.4e-54 218.0 336 36.9
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 6.0e-53 212.6 174 61.5
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 9.6e-51 205.3 129 78.3
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 1.4e-49 201.4 122 80.3
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 4.0e-49 199.9 167 59.9
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 1.4e-38 164.9 142 62.0
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 2.0e-32 144.4 108 70.4
Hma1.2p1_2169F.1_g315910 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 3.3e-27 127.1 92 71.7
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 5.6e-27 126.3 94 69.1
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 1.8e-25 121.3 416 28.4
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 2.4e-25 120.9 83 68.7
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 1.3e-18 98.6 64 65.6
SEGI_01014 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 2.0e-16 91.3 71 60.6
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 5.0e-15 86.7 71 62.0
HanXRQChr13g0403791 Helianthus annuus HOM05D005532 ORTHO05D006873 3.0e-12 77.4 49 69.4
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 5.1e-12 76.6 62 58.1
unitig_62.g23890 Utricularia gibba HOM05D005532 ORTHO05D006873 2.4e-09 67.8 64 53.1
GSVIVG01003967001 Vitis vinifera HOM05D003363 ORTHO05D003952 3.4e-08 63.9 63 47.6
RhsimUnG0131100 Rhododendron simsii HOM05D005532 ORTHO05D000282 7.7e-08 62.8 44 65.9
CBR_g3871 Chara braunii HOM05D005532 ORTHO05D006873 1.3e-07 62.0 116 34.5


User provided reference genes

Program Settings