Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.5e-104 382.9 198 100.0
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 3.5e-69 265.4 143 98.6
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 9.0e-65 250.8 138 95.7
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 7.6e-64 247.7 138 94.2
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 1.6e-61 240.0 138 91.3
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 6.3e-58 228.0 138 85.5
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 2.4e-57 226.1 138 85.5
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 3.1e-57 225.7 142 82.4
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.1e-57 225.7 138 84.1
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 5.3e-57 224.9 139 86.3
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 6.9e-57 224.6 138 84.1
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.2e-56 223.8 138 83.3
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.2e-56 223.8 138 83.3
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 1.5e-56 223.4 139 83.5
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.4e-56 222.2 139 84.9
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 5.9e-56 221.5 138 82.6
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 7.6e-56 221.1 139 84.2
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.0e-55 220.7 138 83.3
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 1.3e-55 220.3 140 82.9
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.3e-55 220.3 139 84.2
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 2.2e-55 219.5 138 83.3
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 2.2e-55 219.5 139 83.5
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 2.9e-55 219.2 138 82.6
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 5.0e-55 218.4 138 84.8
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 8.4e-55 217.6 140 81.4
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 1.1e-54 217.2 139 82.7
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 1.1e-54 217.2 140 82.9
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 1.4e-54 216.9 138 81.9
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.4e-54 216.9 139 84.2
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 1.4e-54 216.9 138 81.9
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 1.9e-54 216.5 138 80.4
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 3.2e-54 215.7 139 82.0
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 4.2e-54 215.3 138 81.2
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 4.2e-54 215.3 139 82.0
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 5.5e-54 214.9 139 82.7
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 7.2e-54 214.5 138 80.4
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 1.2e-53 213.8 144 79.2
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 1.6e-53 213.4 137 80.3
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 2.1e-53 213.0 138 81.2
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 2.7e-53 212.6 140 80.7
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 4.6e-53 211.8 141 80.1
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 6.1e-53 211.5 137 79.6
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 7.9e-53 211.1 141 80.1
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 7.9e-53 211.1 137 79.6
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 7.9e-53 211.1 139 79.1
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 1.0e-52 210.7 141 79.4
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 1.0e-52 210.7 140 79.3
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 1.8e-52 209.9 139 80.6
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 2.3e-52 209.5 139 79.9
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 3.0e-52 209.1 139 79.9
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 3.9e-52 208.8 140 80.0
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 3.9e-52 208.8 142 78.2
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 5.1e-52 208.4 143 76.9
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 6.7e-52 208.0 139 78.4
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 1.5e-51 206.8 138 76.8
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 1.5e-51 206.8 139 79.1
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 1.9e-51 206.5 138 76.8
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 4.3e-51 205.3 139 79.1
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 5.7e-51 204.9 138 76.1
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 5.7e-51 204.9 143 77.6
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 5.7e-51 204.9 140 79.3
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 7.4e-51 204.5 140 78.6
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 9.7e-51 204.1 138 76.1
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 9.7e-51 204.1 140 77.9
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 1.3e-50 203.8 138 77.5
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 1.3e-50 203.8 143 76.9
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 1.6e-50 203.4 137 75.9
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 1.6e-50 203.4 137 77.4
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 1.6e-50 203.4 140 77.1
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 1.6e-50 203.4 137 75.9
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 3.7e-50 202.2 141 77.3
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 6.3e-50 201.4 140 77.1
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 8.2e-50 201.1 140 76.4
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 2.4e-49 199.5 138 75.4
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 2.4e-49 199.5 137 74.5
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 2.4e-49 199.5 141 76.6
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 6.9e-49 198.0 115 93.0
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 4.5e-48 195.3 161 65.8
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 4.5e-48 195.3 139 74.8
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 4.5e-48 195.3 139 74.8
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 4.5e-48 195.3 140 74.3
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 7.7e-48 194.5 147 71.4
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 1.0e-47 194.1 152 69.7
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 2.2e-47 193.0 164 66.5
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 5.0e-47 191.8 148 71.6
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 5.0e-47 191.8 151 72.2
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 5.0e-47 191.8 151 72.2
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 6.5e-47 191.4 138 73.9
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 6.5e-47 191.4 144 71.5
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 6.5e-47 191.4 175 61.1
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 8.5e-47 191.0 141 73.8
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 2.5e-46 189.5 149 70.5
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.5e-46 189.5 144 70.8
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 5.5e-46 188.3 140 73.6
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 9.4e-46 187.6 138 71.7
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 2.1e-45 186.4 146 69.9
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 2.7e-45 186.0 152 69.1
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 4.6e-45 185.3 148 68.2
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 6.1e-45 184.9 155 67.7
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 6.1e-45 184.9 155 67.7
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 6.1e-45 184.9 141 72.3
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 1.4e-44 183.7 160 63.1
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 5.1e-44 181.8 168 60.1
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 6.7e-44 181.4 140 70.0
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 2.0e-43 179.9 112 83.9
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 3.3e-43 179.1 139 69.1
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 4.3e-43 178.7 176 58.5
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 2.2e-42 176.4 135 73.3
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 8.2e-42 174.5 129 74.4
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 1.8e-41 173.3 136 66.2
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 1.2e-40 170.6 134 71.6
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 1.2e-40 170.6 137 70.1
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 5.9e-40 168.3 113 77.0
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.9e-39 166.0 89 94.4
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 3.8e-39 165.6 138 63.8
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 1.9e-38 163.3 139 64.7
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 2.7e-37 159.5 166 53.6
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 1.8e-36 156.8 112 73.2
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 3.0e-36 156.0 113 74.3
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 7.4e-35 151.4 136 61.0
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 4.8e-34 148.7 128 68.0
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 8.2e-34 147.9 119 68.1
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 2.0e-32 143.3 135 63.0
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 2.2e-31 139.8 168 51.8
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 2.9e-31 139.4 135 63.0
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 8.5e-31 137.9 111 69.4
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 2.7e-29 132.9 109 69.7
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 3.6e-29 132.5 131 58.0
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 4.7e-29 132.1 155 52.9
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.4e-28 130.6 116 61.2
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 5.2e-28 128.6 135 54.1
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 6.7e-28 128.3 97 70.1
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 5.7e-27 125.2 80 83.8
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 7.5e-27 124.8 81 82.7
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.8e-25 120.2 80 80.0
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 4.1e-25 119.0 80 78.8
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 5.3e-25 118.6 115 62.6
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 3.5e-24 115.9 77 80.5
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 5.9e-24 115.2 76 81.6
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 1.7e-23 113.6 138 50.0
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 2.9e-23 112.8 76 76.3
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 3.8e-23 112.5 141 48.2
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 5.0e-23 112.1 69 84.1
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 8.5e-23 111.3 85 68.2
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 9.4e-22 107.8 85 67.1
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 1.5e-19 100.5 100 59.0
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 5.4e-17 92.0 58 79.3
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 3.5e-16 89.4 69 71.0
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 4.5e-16 89.0 70 64.3
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 7.7e-16 88.2 59 79.7
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 2.2e-15 86.7 77 61.0
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 4.2e-14 82.4 130 40.0
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 3.4e-11 72.8 72 59.7
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 3.4e-11 72.8 72 59.7
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 1.0e-07 61.2 62 50.0
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 3.8e-07 59.3 49 61.2
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 5.0e-07 58.9 51 58.8
BolC5t33302H Brassica oleracea HOM05D004301 ORTHO05D005124 8.6e-07 58.2 51 58.8
A06p38190 Brassica napus HOM05D004301 ORTHO05D005124 5.6e-06 55.5 97 42.3
A07p00860 Brassica napus HOM05D004301 ORTHO05D005124 5.6e-06 55.5 37 70.3
BraA06t26734Z Brassica rapa HOM05D004301 ORTHO05D005124 5.6e-06 55.5 97 42.3
BraA07t27884Z Brassica rapa HOM05D004301 ORTHO05D005124 5.6e-06 55.5 37 70.3
PRCOL_00001918 Prasinoderma coloniale HOM05D004301 ORTHO05D005124 9.5e-06 54.7 142 29.6


User provided reference genes

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