Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 0.0e+00 1541.9 832 100.0
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 0.0e+00 1500.7 846 95.3
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 0.0e+00 1499.2 832 96.4
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 0.0e+00 1425.2 832 93.5
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 0.0e+00 1384.8 847 87.5
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 0.0e+00 1168.7 843 74.9
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 0.0e+00 1144.8 839 76.2
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 0.0e+00 1123.2 838 75.3
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 1.5e-294 1016.1 851 67.0
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 1.5e-294 1016.1 851 66.6
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 1.6e-293 1012.7 841 67.3
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 3.8e-290 1001.5 846 65.5
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 2.5e-289 998.8 839 66.9
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 5.5e-289 997.7 844 66.2
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 3.5e-288 995.0 850 65.9
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 1.0e-287 993.4 846 65.4
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 1.8e-287 992.6 840 65.8
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 6.7e-287 990.7 845 65.0
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 2.5e-286 988.8 837 65.6
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 7.4e-286 987.3 849 64.8
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 4.1e-284 981.5 849 64.5
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 4.1e-284 981.5 838 64.0
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 4.1e-284 981.5 839 64.2
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 6.9e-284 980.7 853 64.6
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 9.0e-284 980.3 838 63.8
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 1.2e-283 979.9 837 64.0
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 5.9e-283 977.6 840 64.6
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 7.7e-283 977.2 843 64.3
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 2.9e-282 975.3 850 64.0
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 1.1e-281 973.4 843 64.3
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 1.9e-281 972.6 836 66.6
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 2.5e-281 972.2 839 65.0
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 7.2e-281 970.7 841 63.9
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 4.6e-280 968.0 845 63.9
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 3.0e-279 965.3 843 64.3
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 3.3e-278 961.8 837 65.2
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 7.4e-278 960.7 846 63.6
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 2.8e-277 958.7 840 64.2
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 4.8e-277 958.0 849 63.1
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 6.3e-277 957.6 851 64.9
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 1.1e-276 956.8 845 63.7
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 4.1e-276 954.9 847 64.1
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 2.9e-274 948.7 841 62.7
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 2.5e-273 945.7 847 63.9
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 1.8e-271 939.5 862 65.1
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 1.8e-271 939.5 845 61.7
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 6.7e-271 937.6 834 66.7
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 5.7e-270 934.5 838 61.5
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 1.7e-269 932.9 837 62.1
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 9.1e-268 927.2 843 61.1
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 3.2e-265 918.7 829 61.4
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 7.2e-265 917.5 839 60.8
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 1.8e-263 912.9 840 60.8
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 1.1e-260 903.7 828 60.1
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 1.8e-260 902.9 834 59.7
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 4.1e-260 901.7 838 60.6
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 7.7e-259 897.5 841 59.9
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 2.1e-256 889.4 842 59.4
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 6.1e-256 887.9 841 61.0
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.8e-253 879.0 839 59.0
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.2e-251 873.6 845 58.5
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 1.6e-251 873.2 837 60.2
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 1.5e-249 866.7 843 59.5
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 3.2e-249 865.5 834 59.4
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 4.0e-247 858.6 842 57.7
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 6.8e-247 857.8 863 56.5
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 8.8e-247 857.4 845 58.2
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 1.4e-244 850.1 843 57.8
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 5.4e-244 848.2 842 57.5
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 9.1e-244 847.4 844 58.9
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 1.3e-242 843.6 835 58.8
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 1.5e-241 840.1 819 60.9
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 7.2e-241 837.8 928 54.4
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 4.7e-240 835.1 845 56.0
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 5.2e-239 831.6 822 60.3
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 6.8e-239 831.2 851 59.1
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 1.2e-238 830.5 840 59.9
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 1.2e-238 830.5 840 59.9
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 1.5e-238 830.1 847 58.9
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 2.8e-237 825.9 853 55.6
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 1.1e-236 823.9 841 59.1
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 1.1e-236 823.9 841 59.1
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 1.2e-235 820.5 844 58.6
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 1.0e-234 817.4 849 58.0
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 8.0e-232 807.7 844 57.7
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 3.1e-231 805.8 875 53.6
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 2.6e-230 802.7 791 56.5
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 3.4e-230 802.4 836 55.4
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 7.5e-230 801.2 840 54.4
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 2.5e-225 786.2 830 57.3
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 2.9e-221 772.7 833 53.7
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 1.3e-218 763.8 848 53.7
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.1e-217 760.8 841 54.3
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 2.4e-207 726.5 854 51.6
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 2.6e-206 723.0 690 61.9
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 3.5e-203 712.6 681 60.9
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 6.2e-200 701.8 373 99.2
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 6.9e-199 698.4 850 49.4
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 3.4e-198 696.0 816 51.8
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.9e-196 690.3 830 49.8
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 5.3e-191 672.2 624 61.7
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 3.7e-184 649.4 554 61.9
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.8e-162 577.4 611 56.5
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 1.3e-157 561.2 609 53.4
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 6.3e-152 542.3 892 39.1
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 5.9e-142 509.2 857 40.0
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 2.8e-136 490.3 383 68.1
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 9.1e-135 485.3 834 40.6
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 1.6e-134 484.6 439 62.0
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 3.8e-133 479.9 885 37.4
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 9.1e-127 458.8 495 56.2
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 2.9e-112 410.6 439 56.0
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 2.7e-110 404.1 424 54.2
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 9.5e-100 369.0 937 31.2
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 1.2e-97 362.1 292 64.7
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.2e-94 352.1 327 60.9
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 1.5e-89 335.1 326 59.2
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 7.1e-87 326.2 452 44.2
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 9.3e-87 325.9 239 73.6
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 1.2e-86 325.5 238 73.5
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 3.9e-85 320.5 298 64.4
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 4.3e-76 290.4 333 50.2
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 1.9e-68 265.0 273 58.2
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 4.8e-67 260.4 189 70.4
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 6.0e-62 243.4 227 56.4
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 3.9e-61 240.7 197 65.0
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 1.4e-55 222.2 217 55.8
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 1.9e-55 221.9 928 26.8
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 2.5e-55 221.5 158 70.9
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.6e-46 192.2 182 56.6
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 5.3e-42 177.2 208 51.4
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 3.6e-38 164.5 147 60.5
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.4e-37 162.5 145 63.4
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 2.4e-34 151.8 171 52.6
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 3.1e-34 151.4 160 56.2
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 9.1e-34 149.8 575 28.3
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 5.0e-32 144.1 285 39.3
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 2.5e-31 141.7 591 27.2
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 7.2e-31 140.2 103 68.9
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 1.4e-29 136.0 282 38.7
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 3.0e-29 134.8 169 46.7
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 6.7e-29 133.7 290 37.6
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 2.8e-27 128.3 106 64.2
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 3.8e-24 117.9 543 23.9
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 2.0e-20 105.5 118 50.8
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.7e-19 102.4 76 68.4
FAN24G0390 Fragaria x ananassa HOM05D004092 ORTHO05D016651 3.1e-18 98.2 60 81.7
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 1.2e-17 96.3 60 70.0
FvH4_6g51840 Fragaria vesca HOM05D004092 ORTHO05D016651 1.2e-17 96.3 62 77.4
FAN01G1588 Fragaria x ananassa HOM05D004092 ORTHO05D016651 1.2e-17 96.3 62 77.4
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 1.1e-15 89.7 96 54.2
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 2.7e-14 85.1 58 67.2
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 2.3e-13 82.0 188 42.0
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 8.8e-13 80.1 191 41.4
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 3.4e-12 78.2 69 58.0
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.3e-11 76.3 63 55.6
FAN14G4793 Fragaria x ananassa HOM05D004092 ORTHO05D016651 6.3e-11 73.9 49 73.5
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 8.3e-11 73.6 180 36.1
FAN24G0029 Fragaria x ananassa HOM05D004092 ORTHO05D016651 1.8e-10 72.4 49 73.5
FAN03G1151 Fragaria x ananassa HOM05D004092 ORTHO05D016651 4.1e-10 71.2 52 67.3
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 5.4e-10 70.9 65 53.8
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 1.0e-08 66.6 55 56.4
Actinidia37123 Actinidia chinensis HOM05D004092 ORTHO05D005448 4.3e-07 61.2 126 38.1
arahy.Tifrunner.gnm1.ann1.BR68XX Arachis hypogaea HOM05D002764 ORTHO05D002960 4.3e-07 61.2 89 42.7


User provided reference genes

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