Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G3312 Fragaria x ananassa HOM05D006452 ORTHO05D008068 2.4e-248 861.7 432 100.0
FvH4_3g08370 Fragaria vesca HOM05D006452 ORTHO05D008068 1.1e-232 809.7 419 96.4
RcHm_v2.0_Chr5g0009531 Rosa chinensis HOM05D006452 ORTHO05D008068 2.3e-214 748.8 419 90.2
FAN25G3335 Fragaria x ananassa HOM05D006452 ORTHO05D008068 7.2e-208 727.2 416 89.2
FAN21G3590 Fragaria x ananassa HOM05D006452 ORTHO05D008068 2.6e-202 708.8 420 86.7
FAN11G3013 Fragaria x ananassa HOM05D006452 ORTHO05D008068 4.1e-195 684.9 416 85.1
MD05G1308100 Malus domestica HOM05D006452 ORTHO05D008068 3.8e-177 625.2 421 75.1
Prupe.4G054700 Prunus persica HOM05D006452 ORTHO05D008068 1.8e-171 606.3 409 75.1
Potri.004G051000 Populus trichocarpa HOM05D006452 ORTHO05D008068 8.9e-158 560.8 431 63.8
Cfa000544 Carpinus fangiana HOM05D006452 ORTHO05D008068 3.9e-153 545.4 421 63.4
Ciclev10014636m.g Citrus clementina HOM05D006452 ORTHO05D008068 3.3e-152 542.3 421 62.9
Dinv40619 Davidia involucrata HOM05D006452 ORTHO05D008068 2.3e-150 536.2 421 63.2
CiPaw.09G065500 Carya illinoinensis HOM05D006452 ORTHO05D008068 1.5e-149 533.5 421 62.7
QL05p043485 Quercus lobata HOM05D006452 ORTHO05D008068 2.9e-148 529.3 420 62.6
Thecc.06G178700 Theobroma cacao HOM05D006452 ORTHO05D008068 7.8e-146 521.2 421 59.6
Sabra04G0032100 Salix brachista HOM05D006452 ORTHO05D008068 1.0e-145 520.8 441 58.7
Gorai.010G157000 Gossypium raimondii HOM05D006452 ORTHO05D008068 3.0e-145 519.2 421 60.8
Manes.17G051000 Manihot esculenta HOM05D006452 ORTHO05D008068 6.6e-145 518.1 420 61.4
CANSAT35G2027 Cannabis sativa HOM05D006452 ORTHO05D008068 3.3e-144 515.8 422 61.4
Duzib235G0445 Durio zibethinus HOM05D006452 ORTHO05D008068 2.8e-143 512.7 420 59.8
Gohir.A06G134400 Gossypium hirsutum HOM05D006452 ORTHO05D008068 3.6e-143 512.3 421 59.9
GSVIVG01021140001 Vitis vinifera HOM05D006452 ORTHO05D008068 1.4e-142 510.4 424 60.4
Gohir.D06G135100 Gossypium hirsutum HOM05D006452 ORTHO05D008068 8.9e-142 507.7 422 60.2
TAR629G0815 Trochodendron aralioides HOM05D006452 ORTHO05D008068 2.6e-141 506.1 421 59.1
Hma1.2p1_1465F.1_g285350 Hydrangea macrophylla HOM05D006452 ORTHO05D008068 5.4e-139 498.4 417 60.2
Actinidia39488 Actinidia chinensis HOM05D006452 ORTHO05D008068 1.6e-135 486.9 421 58.0
CSS0041533 Camellia sinensis var. sinensis HOM05D006452 ORTHO05D008068 1.5e-133 480.3 421 58.0
TWI38G0383 Tripterygium wilfordii HOM05D006452 ORTHO05D008068 3.4e-133 479.2 421 56.8
Ca_00397_v3 Cicer arietinum L. HOM05D006452 ORTHO05D008068 4.4e-133 478.8 421 57.7
Medtr2g014890 Medicago truncatula HOM05D006452 ORTHO05D008068 7.6e-133 478.0 421 58.7
Lj6g0021964 Lotus japonicus HOM05D006452 ORTHO05D008068 8.4e-132 474.6 421 57.7
Glyma.10G069100 Glycine max HOM05D006452 ORTHO05D008068 5.4e-131 471.9 421 57.5
Lj1A1199G43 Lonicera japonica HOM05D006452 ORTHO05D008068 6.0e-130 468.4 418 56.2
Phvul.006G180500 Phaseolus vulgaris HOM05D006452 ORTHO05D008068 1.0e-129 467.6 421 56.5
BcaC01g00067 Brassica carinata HOM05D006452 ORTHO05D008068 2.3e-129 466.5 420 56.0
VMungo0540G0818 Vigna mungo HOM05D006452 ORTHO05D008068 3.9e-129 465.7 421 57.0
CsaV3_6G050510 Cucumis sativus L. HOM05D006452 ORTHO05D008068 1.5e-128 463.8 432 56.2
Glyma.13G152304 Glycine max HOM05D006452 ORTHO05D008068 2.1e-127 459.9 421 57.2
Nn1g06365 Nelumbo nucifera HOM05D006452 ORTHO05D008068 4.8e-127 458.8 428 54.2
AT1G28530 Arabidopsis thaliana HOM05D006452 ORTHO05D008068 6.2e-127 458.4 419 55.6
AL1G42150 Arabidopsis lyrata HOM05D006452 ORTHO05D008068 3.1e-126 456.1 419 55.4
BraA08t34497Z Brassica rapa HOM05D006452 ORTHO05D008068 5.3e-126 455.3 414 55.6
BolC3t19793H Brassica oleracea HOM05D006452 ORTHO05D008068 6.9e-126 454.9 421 54.6
C03p75340 Brassica napus HOM05D006452 ORTHO05D008068 9.0e-126 454.5 421 54.9
THA.LOC104812622 Tarenaya hassleriana HOM05D006452 ORTHO05D008068 2.6e-125 453.0 419 55.1
COL.COLO4_31396 Corchorus olitorius HOM05D006452 ORTHO05D008068 3.4e-125 452.6 383 58.0
Rhsim02G0137400 Rhododendron simsii HOM05D006452 ORTHO05D008068 4.4e-125 452.2 453 50.8
Sp1g24780 Schrenkiella parvula HOM05D006452 ORTHO05D008068 9.9e-125 451.1 419 53.7
BcaB03g12098 Brassica carinata HOM05D006452 ORTHO05D008068 2.2e-124 449.9 413 55.4
A08p25460 Brassica napus HOM05D006452 ORTHO05D008068 3.8e-124 449.1 413 55.2
Carub.0001s2699 Capsella rubella HOM05D006452 ORTHO05D008068 3.8e-124 449.1 419 54.2
Lalb_Chr18g0059351 Lupinus albus HOM05D006452 ORTHO05D008068 6.4e-124 448.4 420 55.7
Oeu001094.1 Olea europaea HOM05D006452 ORTHO05D008068 8.4e-124 448.0 419 53.5
arahy.Tifrunner.gnm1.ann1.FLUH97 Arachis hypogaea HOM05D006452 ORTHO05D008068 3.2e-123 446.0 421 54.2
CARHR028010 Cardamine hirsuta HOM05D006452 ORTHO05D008068 3.2e-123 446.0 420 54.5
Haze_06337 Corylus avellana HOM05D006452 ORTHO05D008068 9.3e-123 444.5 434 54.1
Thhalv10007091m.g Eutrema salsugineum HOM05D006452 ORTHO05D008068 1.7e-121 440.3 424 53.8
Aqoxy4G00567 Aquilegia oxysepala HOM05D006452 ORTHO05D008068 2.3e-121 439.9 438 51.6
MELO3C007247.2 Cucumis melo HOM05D006452 ORTHO05D008068 8.7e-121 438.0 419 53.9
arahy.Tifrunner.gnm1.ann1.228Z0R Arachis hypogaea HOM05D006452 ORTHO05D008068 1.1e-120 437.6 420 53.1
Aa31LG6G11040 Aethionema arabicum HOM05D006452 ORTHO05D008068 3.3e-120 436.0 489 47.4
Sed0012413 Sechium edule HOM05D006452 ORTHO05D008068 1.6e-119 433.7 418 54.8
Atru.chr10.1767 Acer truncatum HOM05D006452 ORTHO05D008068 8.1e-119 431.4 345 60.6
EL10Ac8g20457 Beta vulgaris HOM05D006452 ORTHO05D008068 3.0e-113 412.9 436 49.1
ClCG01G023380 Citrullus lanatus HOM05D006452 ORTHO05D008068 3.9e-113 412.5 458 48.5
Nitab4.5_0001375g0100 Nicotiana tabacum HOM05D006452 ORTHO05D008068 3.9e-113 412.5 421 50.1
ECA234G2428 Erigeron canadensis HOM05D006452 ORTHO05D008068 8.7e-113 411.4 419 50.4
Nitab4.5_0000516g0020 Nicotiana tabacum HOM05D006452 ORTHO05D008068 3.3e-112 409.5 419 49.9
Migut.M01092 Erythranthe guttata HOM05D006452 ORTHO05D008068 2.8e-111 406.4 419 50.1
HanXRQChr16g0518591 Helianthus annuus HOM05D006452 ORTHO05D008068 1.4e-110 404.1 423 49.4
Cc00_g07720 Coffea canephora HOM05D006452 ORTHO05D008068 4.0e-110 402.5 417 49.2
PGSC0003DMG400012819 Solanum tuberosum HOM05D006452 ORTHO05D008068 5.8e-109 398.7 419 49.4
Lsat_1_v5_gn_4_51620 Lactuca sativa HOM05D006452 ORTHO05D008068 1.3e-108 397.5 421 48.9
Sopen03g002290 Solanum pennellii HOM05D006452 ORTHO05D008068 1.4e-107 394.0 419 48.2
AUR62014896 Chenopodium quinoa HOM05D006452 ORTHO05D008068 7.1e-107 391.7 427 48.7
AUR62031101 Chenopodium quinoa HOM05D006452 ORTHO05D008068 1.8e-105 387.1 427 47.8
PSO832G2664 Papaver somniferum HOM05D006452 ORTHO05D008068 1.1e-104 384.4 506 42.1
PSO210G4080 Papaver somniferum HOM05D006452 ORTHO05D008068 5.8e-101 372.1 506 40.9
SGA_v2.0_scaffold16G07655 Striga asiatica HOM05D006452 ORTHO05D008068 2.9e-100 369.8 419 45.6
SalBow8G3895 Salvia bowleyana HOM05D006452 ORTHO05D008068 7.1e-99 365.2 442 44.8
MBI07_g06446_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 8.5e-92 341.7 459 44.2
CDE10G0189 Ceratophyllum demersum HOM05D006452 ORTHO05D008068 9.7e-88 328.2 434 41.5
Peaxi162Scf01018g00215 Petunia axillaris HOM05D006452 ORTHO05D008068 4.5e-85 319.3 346 47.7
ATR0602G160 Amborella trichopoda HOM05D006452 ORTHO05D008068 1.0e-84 318.2 449 40.8
Solyc03g006280.4 Solanum lycopersicum HOM05D006452 ORTHO05D008068 3.8e-84 316.2 358 46.4
TPR.G11703 Trifolium pratense HOM05D006452 ORTHO05D008068 1.9e-83 313.9 282 58.5
MBI07_g32549_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 4.7e-82 309.3 395 44.1
Cpa.g.sc7.8 Carica papaya HOM05D006452 ORTHO05D008068 7.4e-80 302.0 265 56.6
Hma1.2p1_1465F.1_g285340 Hydrangea macrophylla HOM05D006452 ORTHO05D008068 5.3e-78 295.8 262 57.3
DCAR_006579 Daucus carota HOM05D006452 ORTHO05D008068 2.0e-77 293.9 407 42.0
unitig_8.g4630 Utricularia gibba HOM05D006452 ORTHO05D008068 1.0e-76 291.6 420 39.0
HPP92_000497 Vanilla planifolia HOM05D006452 ORTHO05D008068 4.7e-74 282.7 439 40.3
Os02g0109900 Oryza sativa ssp. japonica HOM05D006452 ORTHO05D008068 1.8e-73 280.8 436 36.9
Zm00001eb229620 Zea mays HOM05D006452 ORTHO05D008068 5.0e-68 262.7 435 37.2
PGR004G2109 Punica granatum HOM05D006452 ORTHO05D008068 4.2e-67 259.6 254 51.2
Psat1g201640 Pisum sativum HOM05D006452 ORTHO05D008068 2.0e-64 250.8 212 59.4
Eucgr.D00580 Eucalyptus grandis HOM05D006452 ORTHO05D008068 3.4e-64 250.0 269 49.1
Sc17g0005860 Simmondsia chinensis HOM05D006452 ORTHO05D008068 1.3e-63 248.1 428 37.4
TPR.G10795 Trifolium pratense HOM05D006452 ORTHO05D008068 2.5e-59 233.8 215 57.7
CAN.G189.65 Capsicum annuum HOM05D006452 ORTHO05D008068 2.0e-56 224.2 235 50.2
Hund23835 Selenicereus undatus HOM05D006452 ORTHO05D008068 2.6e-56 223.8 291 43.6
vmacro15945 Vaccinium macrocarpon HOM05D006452 ORTHO05D008068 7.5e-56 222.2 203 54.2
Psat1g201600 Pisum sativum HOM05D006452 ORTHO05D008068 1.6e-53 214.5 198 55.1
vmacro15946 Vaccinium macrocarpon HOM05D006452 ORTHO05D008068 1.2e-48 198.4 276 40.2
Mapoly0052s0014 Marchantia polymorpha HOM05D006452 ORTHO05D008068 1.3e-39 168.3 437 27.9
Lsat_1_v5_gn_9_9480 Lactuca sativa HOM05D006452 ORTHO05D008068 7.0e-38 162.5 244 41.4
CAN.G801.36 Capsicum annuum HOM05D006452 ORTHO05D008068 7.3e-35 152.5 167 46.1
AagrBONN_evm.TU.Sc2ySwM_228.5590 Anthoceros agrestis HOM05D006452 ORTHO05D008068 4.0e-33 146.7 366 31.4
SEGI_16257 Sequoiadendron giganteum HOM05D006452 ORTHO05D008068 6.4e-31 139.4 305 34.1
unitig_8.g4641 Utricularia gibba HOM05D006452 ORTHO05D008068 7.1e-30 136.0 158 44.3
CAN.G1286.36 Capsicum annuum HOM05D006452 ORTHO05D008068 6.6e-28 129.4 140 45.7
SEGI_13408 Sequoiadendron giganteum HOM05D006452 ORTHO05D008068 2.3e-20 104.4 158 36.1
FvH4_3g08350 Fragaria vesca HOM05D003433 ORTHO05D003921 7.3e-19 99.4 49 98.0
CAN.G638.7 Capsicum annuum HOM05D006452 ORTHO05D008068 6.8e-17 92.8 179 36.3
MBI05_g40582_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D029689 4.4e-08 63.5 72 45.8
MBI05_g44052_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 4.4e-08 63.5 72 45.8
MBI05_g22668_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 1.1e-06 58.9 59 49.2
FvH4_6g33593 Fragaria vesca HOM05D006452 ORTHO05D008068 5.4e-06 56.6 42 69.0


User provided reference genes

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