Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G3295 Fragaria x ananassa HOM05D004454 ORTHO05D035857 6.5e-106 387.5 209 100.0
FAN24G1390 Fragaria x ananassa HOM05D004454 ORTHO05D035857 1.4e-52 210.3 219 59.8
FAN21G3202 Fragaria x ananassa HOM05D004454 ORTHO05D035857 8.1e-48 194.5 213 57.3
RcHm_v2.0_Chr7g0179821 Rosa chinensis HOM05D004454 ORTHO05D005462 5.3e-23 112.1 154 48.7
FAN08G3623 Fragaria x ananassa HOM05D004454 ORTHO05D005462 1.5e-22 110.5 154 47.4
FvH4_5g16310 Fragaria vesca HOM05D004454 ORTHO05D005462 2.0e-22 110.2 154 48.1
FAN04G1717 Fragaria x ananassa HOM05D004454 ORTHO05D005462 2.0e-22 110.2 154 48.1
FAN13G0079 Fragaria x ananassa HOM05D004454 ORTHO05D005462 2.0e-22 110.2 154 48.1
FAN18G3350 Fragaria x ananassa HOM05D004454 ORTHO05D005462 7.6e-22 108.2 154 47.4
Lj9A454G67 Lonicera japonica HOM05D004454 ORTHO05D005462 2.1e-19 100.1 154 43.5
DCAR_026102 Daucus carota HOM05D004454 ORTHO05D005462 2.7e-19 99.8 154 41.6
Hma1.2p1_0002F.1_g002910 Hydrangea macrophylla HOM05D004454 ORTHO05D005462 1.3e-18 97.4 154 42.2
Prupe.5G180200 Prunus persica HOM05D004454 ORTHO05D005462 1.3e-18 97.4 154 42.2
vmacro16584 Vaccinium macrocarpon HOM05D004454 ORTHO05D005462 1.3e-18 97.4 154 43.5
Eucgr.B00321 Eucalyptus grandis HOM05D004454 ORTHO05D005462 2.3e-18 96.7 154 42.9
Eucgr.B00325 Eucalyptus grandis HOM05D004454 ORTHO05D005462 2.3e-18 96.7 154 42.9
Gohir.D10G224100 Gossypium hirsutum HOM05D004454 ORTHO05D005462 3.9e-18 95.9 154 42.2
MD13G1029000 Malus domestica HOM05D004454 ORTHO05D005462 5.1e-18 95.5 154 40.3
MD14G1188000 Malus domestica HOM05D004454 ORTHO05D005462 5.1e-18 95.5 154 40.3
MD17G1272000 Malus domestica HOM05D004454 ORTHO05D005462 5.1e-18 95.5 154 40.3
TAR629G2352 Trochodendron aralioides HOM05D004454 ORTHO05D005462 8.7e-18 94.7 154 41.6
MD06G1182000 Malus domestica HOM05D004454 ORTHO05D005462 1.1e-17 94.4 154 39.6
Actinidia34963 Actinidia chinensis HOM05D004454 ORTHO05D005462 1.5e-17 94.0 154 41.6
CSS0019873 Camellia sinensis var. sinensis HOM05D004454 ORTHO05D005462 1.5e-17 94.0 154 41.6
CSS0024488 Camellia sinensis var. sinensis HOM05D004454 ORTHO05D005462 1.5e-17 94.0 154 41.6
Actinidia19078 Actinidia chinensis HOM05D004454 ORTHO05D005462 1.9e-17 93.6 154 41.6
Eucgr.B00957 Eucalyptus grandis HOM05D004454 ORTHO05D005462 2.5e-17 93.2 154 40.9
Rhsim12G0161100 Rhododendron simsii HOM05D004454 ORTHO05D005462 2.5e-17 93.2 154 41.6
Dinv02657 Davidia involucrata HOM05D004454 ORTHO05D005462 3.3e-17 92.8 154 41.6
Gorai.011G255100 Gossypium raimondii HOM05D004454 ORTHO05D005462 3.3e-17 92.8 154 41.6
Gohir.A10G215100 Gossypium hirsutum HOM05D004454 ORTHO05D005462 4.3e-17 92.4 154 41.6
Lsat_1_v5_gn_5_17960 Lactuca sativa HOM05D004454 ORTHO05D005462 5.7e-17 92.0 155 41.9
MBI01_g40850_MAGBIO Magnolia biondii HOM05D004454 ORTHO05D005462 7.4e-17 91.7 154 40.3
MBI04_g34104_MAGBIO Magnolia biondii HOM05D004454 ORTHO05D005462 7.4e-17 91.7 154 40.3
Manes.14G071000 Manihot esculenta HOM05D004454 ORTHO05D005462 7.4e-17 91.7 154 39.6
QL02p081076 Quercus lobata HOM05D004454 ORTHO05D005462 1.3e-16 90.9 154 42.2
QL10p027831 Quercus lobata HOM05D004454 ORTHO05D005462 1.3e-16 90.9 154 42.2
TAR374G1062 Trochodendron aralioides HOM05D004454 ORTHO05D005462 1.3e-16 90.9 154 40.9
Ciclev10004829m.g Citrus clementina HOM05D004454 ORTHO05D005462 1.6e-16 90.5 154 40.9
Duzib084G0805 Durio zibethinus HOM05D004454 ORTHO05D005462 1.6e-16 90.5 154 40.9
GSVIVG01000277001 Vitis vinifera HOM05D004454 ORTHO05D005462 1.6e-16 90.5 154 41.6
ClCG01G014140 Citrullus lanatus HOM05D004454 ORTHO05D005462 2.1e-16 90.1 154 41.6
PSO832G1188 Papaver somniferum HOM05D004454 ORTHO05D005462 2.1e-16 90.1 154 39.0
Phvul.002G154200 Phaseolus vulgaris HOM05D004454 ORTHO05D005462 2.1e-16 90.1 154 40.9
Atru.chr9.2393 Acer truncatum HOM05D004454 ORTHO05D005462 2.8e-16 89.7 154 40.9
QL10p013674 Quercus lobata HOM05D004454 ORTHO05D005462 2.8e-16 89.7 154 41.6
VMungo1215G3435 Vigna mungo HOM05D004454 ORTHO05D005462 2.8e-16 89.7 154 41.6
PSO013G0161 Papaver somniferum HOM05D004454 ORTHO05D005462 4.8e-16 89.0 154 38.3
Cpa.g.sc35.32 Carica papaya HOM05D004454 ORTHO05D005462 6.2e-16 88.6 155 41.3
MELO3C002234.2 Cucumis melo HOM05D004454 ORTHO05D005462 6.2e-16 88.6 154 40.3
CsaV3_1G008170 Cucumis sativus L. HOM05D004454 ORTHO05D005462 6.2e-16 88.6 154 40.3
Lalb_Chr03g0031901 Lupinus albus HOM05D004454 ORTHO05D005462 6.2e-16 88.6 154 41.6
arahy.Tifrunner.gnm1.ann1.AQXS59 Arachis hypogaea HOM05D004454 ORTHO05D005462 8.2e-16 88.2 154 40.3
Nn4g22938 Nelumbo nucifera HOM05D004454 ORTHO05D005462 8.2e-16 88.2 154 41.6
TWI60G0736 Tripterygium wilfordii HOM05D004454 ORTHO05D005462 8.2e-16 88.2 154 41.6
CiPaw.12G022700 Carya illinoinensis HOM05D004454 ORTHO05D005462 1.1e-15 87.8 154 40.9
Ciclev10019469m.g Citrus clementina HOM05D004454 ORTHO05D005462 1.1e-15 87.8 154 40.9
Lalb_Chr19g0133161 Lupinus albus HOM05D004454 ORTHO05D005462 1.1e-15 87.8 154 40.9
Oeu016330.1 Olea europaea HOM05D004454 ORTHO05D005462 1.4e-15 87.4 148 41.9
MSTRG.9661 Avicennia marina HOM05D004454 ORTHO05D005462 1.8e-15 87.0 145 42.1
SalBow5G4570 Salvia bowleyana HOM05D004454 ORTHO05D005462 1.8e-15 87.0 145 42.1
arahy.Tifrunner.gnm1.ann1.7D20F1 Arachis hypogaea HOM05D004454 ORTHO05D005462 2.4e-15 86.7 154 40.3
Thecc.03G002900 Theobroma cacao HOM05D004454 ORTHO05D005462 2.4e-15 86.7 154 39.0
Glyma.11G026400 Glycine max HOM05D004454 ORTHO05D005462 3.1e-15 86.3 154 40.3
HanXRQChr05g0155441 Helianthus annuus HOM05D004454 ORTHO05D005462 3.1e-15 86.3 157 36.3
Ca_26268_v3 Cicer arietinum L. HOM05D004454 ORTHO05D005462 4.0e-15 85.9 152 40.1
Migut.I00064 Erythranthe guttata HOM05D004454 ORTHO05D005462 4.0e-15 85.9 145 40.7
HanXRQChr14g0438801 Helianthus annuus HOM05D004454 ORTHO05D005462 5.3e-15 85.5 150 39.3
Lj3g0012006 Lotus japonicus HOM05D004454 ORTHO05D005462 5.3e-15 85.5 153 39.9
SGA_v2.0_scaffold467G52036 Striga asiatica HOM05D004454 ORTHO05D005462 5.3e-15 85.5 145 42.8
GSVIVG01022319001 Vitis vinifera HOM05D004454 ORTHO05D005462 9.0e-15 84.7 154 39.6
Glyma.01G216500 Glycine max HOM05D004454 ORTHO05D005462 1.2e-14 84.3 154 40.3
Nitab4.5_0000026g0380 Nicotiana tabacum HOM05D004454 ORTHO05D005462 1.2e-14 84.3 147 41.5
Nitab4.5_0003577g0020 Nicotiana tabacum HOM05D004454 ORTHO05D005462 1.2e-14 84.3 147 41.5
Haze_07431 Corylus avellana HOM05D004454 ORTHO05D005462 1.5e-14 84.0 154 37.7
Potri.012G075000 Populus trichocarpa HOM05D004454 ORTHO05D005462 1.5e-14 84.0 154 39.6
THA.LOC104799671 Tarenaya hassleriana HOM05D004454 ORTHO05D005462 1.5e-14 84.0 154 39.0
Ca_00529_v3 Cicer arietinum L. HOM05D004454 ORTHO05D005462 2.0e-14 83.6 152 38.8
DCAR_031479 Daucus carota HOM05D004454 ORTHO05D005462 2.0e-14 83.6 154 39.0
Sed0026284 Sechium edule HOM05D004454 ORTHO05D005462 2.0e-14 83.6 154 40.3
Sabra12G0053400 Salix brachista HOM05D004454 ORTHO05D005462 2.6e-14 83.2 154 39.6
Cfa019062 Carpinus fangiana HOM05D004454 ORTHO05D005462 3.4e-14 82.8 154 38.3
Psat4g146120 Pisum sativum HOM05D004454 ORTHO05D005462 4.5e-14 82.4 153 37.9
BcaB01g00842 Brassica carinata HOM05D004454 ORTHO05D005462 7.6e-14 81.6 154 36.4
ECA246G3380 Erigeron canadensis HOM05D004454 ORTHO05D005462 7.6e-14 81.6 152 37.5
Peaxi162Scf00017g02211 Petunia axillaris HOM05D004454 ORTHO05D005462 7.6e-14 81.6 147 40.1
AL5G27480 Arabidopsis lyrata HOM05D004454 ORTHO05D005462 1.3e-13 80.9 154 38.3
Carub.0005s1425 Capsella rubella HOM05D004454 ORTHO05D005462 1.3e-13 80.9 154 38.3
Thhalv10010239m.g Eutrema salsugineum HOM05D004454 ORTHO05D005462 1.3e-13 80.9 154 38.3
Sp5g13890 Schrenkiella parvula HOM05D004454 ORTHO05D005462 1.3e-13 80.9 154 38.3
AT3G48150 Arabidopsis thaliana HOM05D004454 ORTHO05D005462 1.7e-13 80.5 154 37.0
BcaC07g39296 Brassica carinata HOM05D004454 ORTHO05D005462 2.2e-13 80.1 154 35.7
BcaC09g49851 Brassica carinata HOM05D004454 ORTHO05D005462 2.2e-13 80.1 154 37.7
A06p19550 Brassica napus HOM05D004454 ORTHO05D005462 2.2e-13 80.1 154 35.7
C01p31930 Brassica napus HOM05D004454 ORTHO05D005462 2.2e-13 80.1 154 37.7
C08p23030 Brassica napus HOM05D004454 ORTHO05D005462 2.2e-13 80.1 154 35.7
BolC1t03163H Brassica oleracea HOM05D004454 ORTHO05D005462 2.2e-13 80.1 154 37.7
BolC8t49941H Brassica oleracea HOM05D004454 ORTHO05D005462 2.2e-13 80.1 154 35.7
BraA06t25035Z Brassica rapa HOM05D004454 ORTHO05D005462 2.2e-13 80.1 154 35.7
Glyma.12G016100 Glycine max HOM05D004454 ORTHO05D005462 2.2e-13 80.1 154 37.7
TPR.G25821 Trifolium pratense HOM05D004454 ORTHO05D005462 2.2e-13 80.1 152 38.2
CAN.G853.25 Capsicum annuum HOM05D004454 ORTHO05D005462 5.0e-13 79.0 147 39.5
Solyc03g113740.4 Solanum lycopersicum HOM05D004454 ORTHO05D005462 5.0e-13 79.0 147 39.5
Sopen03g032790 Solanum pennellii HOM05D004454 ORTHO05D005462 5.0e-13 79.0 147 39.5
EL10Ac5g10847 Beta vulgaris HOM05D004454 ORTHO05D005462 6.5e-13 78.6 154 37.0
AUR62008292 Chenopodium quinoa HOM05D004454 ORTHO05D005462 6.5e-13 78.6 154 37.0
AUR62031054 Chenopodium quinoa HOM05D004454 ORTHO05D005462 6.5e-13 78.6 154 37.0
Phvul.007G021500 Phaseolus vulgaris HOM05D004454 ORTHO05D005462 6.5e-13 78.6 145 40.0
BcaB05g22913 Brassica carinata HOM05D004454 ORTHO05D005462 8.4e-13 78.2 154 37.0
Medtr1g103750 Medicago truncatula HOM05D004454 ORTHO05D005462 8.4e-13 78.2 157 35.7
Aqoxy3G03142 Aquilegia oxysepala HOM05D004454 ORTHO05D005462 1.1e-12 77.8 153 36.6
A01p25460 Brassica napus HOM05D004454 ORTHO05D005462 1.4e-12 77.4 154 37.0
BraA01t02468Z Brassica rapa HOM05D004454 ORTHO05D005462 1.4e-12 77.4 154 37.0
unitig_0.g2210 Utricularia gibba HOM05D004454 ORTHO05D005462 1.4e-12 77.4 145 37.9
Nn3g17037 Nelumbo nucifera HOM05D004454 ORTHO05D005462 1.9e-12 77.0 139 38.8
Ah.11g046280 Amaranthus hybridus HOM05D004454 ORTHO05D005462 3.2e-12 76.3 154 35.7
CARHR156870 Cardamine hirsuta HOM05D004454 ORTHO05D005462 1.6e-11 73.9 154 35.7
Hund02707 Selenicereus undatus HOM05D004454 ORTHO05D005462 1.3e-10 70.9 150 36.0
HPP92_012132 Vanilla planifolia HOM05D004454 ORTHO05D005462 1.3e-10 70.9 153 32.7
Dinv13132 Davidia involucrata HOM05D004454 ORTHO05D005462 2.3e-10 70.1 132 38.6
Medtr8g021140 Medicago truncatula HOM05D004454 ORTHO05D005462 1.9e-09 67.0 157 33.8
Zm00001eb249420 Zea mays HOM05D004454 ORTHO05D005462 1.9e-09 67.0 154 35.1
Os02g0656300 Oryza sativa ssp. japonica HOM05D004454 ORTHO05D005462 5.7e-09 65.5 154 33.1
PGSC0003DMG400024579 Solanum tuberosum HOM05D004454 ORTHO05D005462 9.7e-09 64.7 115 40.0
COL.COLO4_21447 Corchorus olitorius HOM05D000359 ORTHO05D000251 1.6e-08 63.9 133 38.3
Sc04g0002160 Simmondsia chinensis HOM05D004454 ORTHO05D005462 1.4e-07 60.8 132 37.1
FAN22G0042 Fragaria x ananassa HOM05D004454 ORTHO05D005462 4.1e-07 59.3 55 65.5
ATR0057G034 Amborella trichopoda HOM05D004454 ORTHO05D005462 5.3e-07 58.9 145 33.1
MBI01_g33693_MAGBIO Magnolia biondii HOM05D004454 ORTHO05D005462 9.0e-07 58.2 136 32.4
FAN28G2148 Fragaria x ananassa HOM05D005236 ORTHO05D006557 1.2e-06 57.8 40 75.0


User provided reference genes

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