Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G3293 Fragaria x ananassa HOM05D006750 ORTHO05D008426 4.6e-94 347.8 167 100.0
FvH4_3g12150 Fragaria vesca HOM05D006750 ORTHO05D008426 1.1e-90 336.7 167 98.2
FAN25G1681 Fragaria x ananassa HOM05D006750 ORTHO05D008426 4.0e-90 334.7 167 97.0
RcHm_v2.0_Chr5g0019891 Rosa chinensis HOM05D006750 ORTHO05D008426 5.2e-82 307.8 167 89.2
MD10G1234600 Malus domestica HOM05D006750 ORTHO05D008426 2.9e-72 275.4 171 77.2
Prupe.4G110300 Prunus persica HOM05D006750 ORTHO05D008426 4.9e-72 274.6 171 78.4
MD05G1254400 Malus domestica HOM05D006750 ORTHO05D008426 4.2e-71 271.6 171 75.4
Ciclev10016972m.g Citrus clementina HOM05D006750 ORTHO05D008426 8.7e-61 237.3 162 64.2
Atru.chr12.2220 Acer truncatum HOM05D006750 ORTHO05D008426 1.4e-58 229.9 162 63.6
CANSAT21G0613 Cannabis sativa HOM05D006750 ORTHO05D008426 9.0e-58 227.3 170 63.5
CSS0027015 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 1.2e-57 226.9 157 65.6
Thecc.06G141200 Theobroma cacao HOM05D006750 ORTHO05D008426 1.3e-56 223.4 163 62.6
Potri.012G120220 Populus trichocarpa HOM05D006750 ORTHO05D008426 2.2e-56 222.6 161 64.0
Thecc.06G140200 Theobroma cacao HOM05D006750 ORTHO05D008426 3.8e-56 221.9 163 62.6
CiPaw.10G065100 Carya illinoinensis HOM05D006750 ORTHO05D008426 8.4e-56 220.7 159 61.0
Potri.012G120100 Populus trichocarpa HOM05D006750 ORTHO05D008426 1.4e-55 219.9 161 63.4
Cc09_g06280 Coffea canephora HOM05D006750 ORTHO05D008426 3.2e-55 218.8 161 64.6
Manes.11G104340 Manihot esculenta HOM05D006750 ORTHO05D008426 3.2e-55 218.8 164 61.6
Actinidia22388 Actinidia chinensis HOM05D006750 ORTHO05D008426 1.6e-54 216.5 158 63.9
vmacro03507 Vaccinium macrocarpon HOM05D006750 ORTHO05D008426 2.7e-54 215.7 137 70.1
Eucgr.D01041 Eucalyptus grandis HOM05D006750 ORTHO05D008426 7.9e-54 214.2 142 67.6
Haze_06024 Corylus avellana HOM05D006750 ORTHO05D008426 1.0e-53 213.8 143 69.2
Gorai.009G437900 Gossypium raimondii HOM05D006750 ORTHO05D008426 1.3e-53 213.4 161 60.9
TWI63G0081 Tripterygium wilfordii HOM05D006750 ORTHO05D008426 1.3e-53 213.4 162 60.5
Haze_06026 Corylus avellana HOM05D006750 ORTHO05D008426 3.0e-53 212.2 143 68.5
GSVIVG01012094001 Vitis vinifera HOM05D006750 ORTHO05D008426 5.1e-53 211.5 145 63.4
Gohir.D05G369200 Gossypium hirsutum HOM05D006750 ORTHO05D008426 8.7e-53 210.7 161 60.2
Gohir.A04G017000 Gossypium hirsutum HOM05D006750 ORTHO05D008426 1.5e-52 209.9 161 60.2
Sed0026407 Sechium edule HOM05D006750 ORTHO05D008426 1.5e-52 209.9 146 65.8
MELO3C021769.2 Cucumis melo HOM05D006750 ORTHO05D008426 1.9e-52 209.5 149 63.8
RhsimUnG0232200 Rhododendron simsii HOM05D006750 ORTHO05D008426 1.9e-52 209.5 156 64.1
Dinv11873 Davidia involucrata HOM05D006750 ORTHO05D008426 2.8e-51 205.7 143 66.4
Sabra15G0136900 Salix brachista HOM05D006750 ORTHO05D008426 2.8e-51 205.7 145 65.5
Lj1A1143T38 Lonicera japonica HOM05D006750 ORTHO05D008426 4.8e-51 204.9 145 64.1
CSS0019703 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 6.2e-51 204.5 140 65.0
TAR627G0115 Trochodendron aralioides HOM05D006750 ORTHO05D008426 1.4e-50 203.4 162 59.9
ClCG01G009300 Citrullus lanatus HOM05D006750 ORTHO05D008426 4.0e-50 201.8 146 63.7
DCAR_004323 Daucus carota HOM05D006750 ORTHO05D008426 5.3e-50 201.4 143 65.7
CsaV3_1G046580 Cucumis sativus L. HOM05D006750 ORTHO05D008426 9.0e-50 200.7 149 62.4
CAN.G1222.19 Capsicum annuum HOM05D006750 ORTHO05D008426 3.4e-49 198.7 156 62.2
Duzib235G0570 Durio zibethinus HOM05D006750 ORTHO05D008426 3.4e-49 198.7 147 60.5
PGR142G2582 Punica granatum HOM05D006750 ORTHO05D008426 5.8e-49 198.0 164 57.3
QL11p018076 Quercus lobata HOM05D006750 ORTHO05D008426 7.6e-49 197.6 152 61.8
Hma1.2p1_0040F.1_g025070 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 1.3e-48 196.8 128 68.8
Nitab4.5_0003773g0080 Nicotiana tabacum HOM05D006750 ORTHO05D008426 1.3e-48 196.8 156 60.3
Aqoxy1G01469 Aquilegia oxysepala HOM05D006750 ORTHO05D008426 1.7e-48 196.4 161 55.9
HanXRQChr07g0189661 Helianthus annuus HOM05D006750 ORTHO05D008426 3.8e-48 195.3 145 60.0
Nn7g38126 Nelumbo nucifera HOM05D006750 ORTHO05D008426 6.5e-48 194.5 165 54.5
Solyc02g069070.3 Solanum lycopersicum HOM05D006750 ORTHO05D008426 6.5e-48 194.5 156 59.6
THA.LOC104824253 Tarenaya hassleriana HOM05D006750 ORTHO05D008426 9.3e-47 190.7 155 57.4
CARHR134300 Cardamine hirsuta HOM05D006750 ORTHO05D008426 1.6e-46 189.9 157 56.7
AT2G39440 Arabidopsis thaliana HOM05D006750 ORTHO05D008426 2.1e-46 189.5 157 56.1
Thhalv10017350m.g Eutrema salsugineum HOM05D006750 ORTHO05D008426 2.1e-46 189.5 157 56.1
Nitab4.5_0002056g0050 Nicotiana tabacum HOM05D006750 ORTHO05D008426 2.1e-46 189.5 156 59.0
AL4G36810 Arabidopsis lyrata HOM05D006750 ORTHO05D008426 2.7e-46 189.1 159 54.7
Oeu052673.2 Olea europaea HOM05D006750 ORTHO05D008426 2.7e-46 189.1 146 59.6
MSTRG.22268 Avicennia marina HOM05D006750 ORTHO05D008426 4.6e-46 188.3 136 62.5
Carub.0004s2150 Capsella rubella HOM05D006750 ORTHO05D008426 1.0e-45 187.2 157 54.1
Ca_21154_v3 Cicer arietinum L. HOM05D006750 ORTHO05D008426 1.8e-45 186.4 164 56.1
BraA05t19661Z Brassica rapa HOM05D006750 ORTHO05D008426 2.3e-45 186.0 145 57.2
BcaC02g11618 Brassica carinata HOM05D006750 ORTHO05D008426 3.0e-45 185.7 145 57.2
C04p13120 Brassica napus HOM05D006750 ORTHO05D008426 3.0e-45 185.7 145 57.2
BolC4t22432H Brassica oleracea HOM05D006750 ORTHO05D008426 5.1e-45 184.9 145 56.6
A05p06970 Brassica napus HOM05D006750 ORTHO05D008426 6.7e-45 184.5 145 57.2
BcaB02g09122 Brassica carinata HOM05D006750 ORTHO05D008426 4.3e-44 181.8 159 52.2
BcaC02g12068 Brassica carinata HOM05D006750 ORTHO05D008426 4.3e-44 181.8 145 55.9
Sp4g21740 Schrenkiella parvula HOM05D006750 ORTHO05D008426 4.3e-44 181.8 157 54.1
SGA_v2.0_scaffold298G47680 Striga asiatica HOM05D006750 ORTHO05D008426 7.4e-44 181.0 152 57.2
EL10Ac2g02809 Beta vulgaris HOM05D006750 ORTHO05D008426 1.3e-43 180.3 162 55.6
C04p08300 Brassica napus HOM05D006750 ORTHO05D008426 1.6e-43 179.9 145 55.9
Lsat_1_v5_gn_5_36321 Lactuca sativa HOM05D006750 ORTHO05D008426 2.2e-43 179.5 136 59.6
Migut.M01971 Erythranthe guttata HOM05D006750 ORTHO05D008426 2.8e-43 179.1 140 56.4
TPR.G24866 Trifolium pratense HOM05D006750 ORTHO05D008426 2.8e-43 179.1 163 54.0
SalBow8G0594 Salvia bowleyana HOM05D006750 ORTHO05D008426 1.4e-42 176.8 137 58.4
SalBow8G2736 Salvia bowleyana HOM05D006750 ORTHO05D008426 1.4e-42 176.8 137 58.4
Cfa000723 Carpinus fangiana HOM05D006750 ORTHO05D008426 2.4e-42 176.0 114 69.3
Psat0s3953g0080 Pisum sativum HOM05D006750 ORTHO05D008426 9.0e-42 174.1 159 53.5
Lj4g0008374 Lotus japonicus HOM05D006750 ORTHO05D008426 1.5e-41 173.3 162 53.1
unitig_748.g7497 Utricularia gibba HOM05D006750 ORTHO05D008426 1.5e-41 173.3 139 59.0
Phvul.003G153500 Phaseolus vulgaris HOM05D006750 ORTHO05D008426 2.6e-41 172.6 155 52.9
Sp4g08180 Schrenkiella parvula HOM05D006750 ORTHO05D008426 2.6e-41 172.6 163 51.5
ECA246G4127 Erigeron canadensis HOM05D006750 ORTHO05D008426 5.9e-41 171.4 148 53.4
PSO541G1844 Papaver somniferum HOM05D006750 ORTHO05D008426 5.9e-41 171.4 156 51.9
PSO675G8070 Papaver somniferum HOM05D006750 ORTHO05D008426 5.9e-41 171.4 144 54.9
Glyma.02G206800 Glycine max HOM05D006750 ORTHO05D008426 2.2e-40 169.5 158 51.9
AUR62007362 Chenopodium quinoa HOM05D006750 ORTHO05D008426 2.9e-40 169.1 138 57.2
VMungo1215G0360 Vigna mungo HOM05D006750 ORTHO05D008426 6.5e-40 167.9 155 52.3
AUR62018626 Chenopodium quinoa HOM05D006750 ORTHO05D008426 5.5e-39 164.9 138 55.8
arahy.Tifrunner.gnm1.ann1.8322W6 Arachis hypogaea HOM05D006750 ORTHO05D008426 1.6e-38 163.3 159 48.4
arahy.Tifrunner.gnm1.ann1.RPZE8L Arachis hypogaea HOM05D006750 ORTHO05D008426 1.6e-38 163.3 159 48.4
HPP92_004186 Vanilla planifolia HOM05D006750 ORTHO05D008426 7.9e-38 161.0 142 50.7
Ah.12g055560 Amaranthus hybridus HOM05D002269 ORTHO05D002421 5.1e-37 158.3 165 50.3
CDE06G2778 Ceratophyllum demersum HOM05D006750 ORTHO05D008426 5.1e-37 158.3 123 54.5
Os02g0168900 Oryza sativa ssp. japonica HOM05D006750 ORTHO05D008426 2.5e-36 156.0 146 53.4
COL.COLO4_30981 Corchorus olitorius HOM05D006750 ORTHO05D008426 3.3e-36 155.6 110 62.7
Sc05g0005750 Simmondsia chinensis HOM05D006750 ORTHO05D008426 1.7e-35 153.3 120 60.0
Lalb_Chr02g0152091 Lupinus albus HOM05D006750 ORTHO05D008426 9.1e-34 147.5 163 44.8
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.0e-32 144.1 116 56.0
Hma1.2p1_0040F.1_g025080 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 1.9e-31 139.8 93 68.8
Peaxi162Scf00149g00921 Petunia axillaris HOM05D006750 ORTHO05D008426 3.9e-29 132.1 156 46.2
ATR0763G132 Amborella trichopoda HOM05D006750 ORTHO05D008426 6.7e-29 131.3 139 46.8
Pp3c2_9480 Physcomitrium patens HOM05D006750 ORTHO05D008426 1.1e-26 124.0 147 40.1
Mapoly0007s0049 Marchantia polymorpha HOM05D006750 ORTHO05D008426 6.9e-26 121.3 141 45.4
CBR_g39953 Chara braunii HOM05D006750 ORTHO05D008426 2.9e-24 115.9 158 38.6
SMO367G1186 Selaginella moellendorffii HOM05D006750 ORTHO05D008426 2.9e-24 115.9 128 40.6
SHI31544 Sapria himalayana HOM05D006750 ORTHO05D008426 6.5e-24 114.8 200 33.5
CARHR087370 Cardamine hirsuta HOM05D006750 ORTHO05D008426 1.2e-22 110.5 86 59.3
Hund11170 Selenicereus undatus HOM05D006750 ORTHO05D008426 6.1e-22 108.2 81 60.5
Cpa.g.sc135.32 Carica papaya HOM05D006750 ORTHO05D008426 1.8e-18 96.7 69 59.4
Zm00001eb233030 Zea mays HOM05D006750 ORTHO05D008426 7.7e-17 91.3 140 39.3
Cre08.g378100 Chlamydomonas reinhardtii HOM05D006750 ORTHO05D008426 7.2e-15 84.7 137 35.0
AagrBONN_evm.TU.Sc2ySwM_344.3424 Anthoceros agrestis HOM05D006750 ORTHO05D008426 1.2e-14 84.0 104 40.4
Sopen02g018170 Solanum pennellii HOM05D006750 ORTHO05D008426 1.4e-13 80.5 67 53.7
Hund11169 Selenicereus undatus HOM05D006750 ORTHO05D008426 1.5e-12 77.0 94 46.8
TPR.G24917 Trifolium pratense HOM05D006750 ORTHO05D008426 2.6e-12 76.3 84 46.4
Zm00001eb233050 Zea mays HOM05D006750 ORTHO05D008426 2.2e-11 73.2 137 35.8
PRCOL_00005799 Prasinoderma coloniale HOM05D006750 ORTHO05D008426 1.3e-08 63.9 125 30.4
Cfa003473 Carpinus fangiana HOM05D006750 ORTHO05D008426 4.7e-06 55.5 32 71.9
MBI18_g36125_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D018396 6.1e-06 55.1 60 40.0
Cfa010446 Carpinus fangiana HOM05D006750 ORTHO05D008426 8.0e-06 54.7 47 55.3


User provided reference genes

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