Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.1e-272 941.8 489 100.0
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.0e-267 925.2 489 98.8
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.7e-264 914.8 489 96.9
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 5.2e-239 830.9 446 98.0
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.4e-236 822.8 450 96.2
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 5.0e-234 814.3 450 94.7
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 1.6e-227 792.7 445 93.5
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 1.5e-174 616.7 467 70.0
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 2.0e-169 599.7 443 70.7
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 1.4e-154 550.4 460 65.0
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 4.4e-153 545.4 445 66.1
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 5.7e-153 545.0 445 65.6
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 5.7e-153 545.0 399 72.2
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 4.8e-152 542.0 445 65.6
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 7.0e-151 538.1 445 64.9
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 9.1e-151 537.7 445 65.4
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 9.1e-151 537.7 442 63.8
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 1.7e-149 533.5 437 62.7
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 8.5e-149 531.2 458 62.4
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 1.5e-148 530.4 455 63.7
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 1.5e-148 530.4 448 64.3
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 4.7e-147 525.4 448 62.1
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 6.1e-147 525.0 444 63.7
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 4.0e-146 522.3 440 62.5
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 6.8e-146 521.5 441 62.4
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 6.8e-146 521.5 441 62.4
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 1.5e-145 520.4 448 62.9
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 2.6e-145 519.6 450 63.3
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 3.4e-145 519.2 454 60.8
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 1.1e-143 514.2 449 61.7
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 2.4e-143 513.1 459 61.0
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 2.7e-142 509.6 430 64.4
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 3.5e-142 509.2 454 61.0
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 1.3e-141 507.3 487 57.5
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 2.9e-141 506.1 451 59.9
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 5.0e-141 505.4 455 59.3
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.1e-140 504.2 444 61.5
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 1.5e-140 503.8 448 61.2
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 2.5e-140 503.1 469 58.6
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 3.2e-140 502.7 463 59.2
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 1.2e-139 500.7 455 61.3
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 1.6e-139 500.4 475 58.5
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 2.7e-139 499.6 443 60.9
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 4.7e-139 498.8 455 60.4
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 2.3e-138 496.5 460 60.4
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 5.2e-138 495.4 443 60.7
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 6.8e-138 495.0 440 60.7
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 8.8e-138 494.6 442 60.2
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 1.5e-137 493.8 446 58.7
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 7.5e-137 491.5 454 58.6
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 7.5e-137 491.5 455 59.6
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 9.8e-137 491.1 430 61.6
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.3e-136 490.7 461 59.0
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 1.7e-136 490.3 452 57.3
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 2.8e-136 489.6 462 58.9
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 6.3e-136 488.4 482 57.7
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 8.3e-136 488.0 442 61.3
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.1e-135 487.6 462 58.2
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 1.4e-135 487.3 438 58.9
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 2.4e-135 486.5 438 58.7
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 3.1e-135 486.1 446 61.0
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 3.1e-135 486.1 462 58.0
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 3.5e-134 482.6 440 58.6
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 3.8e-133 479.2 344 69.8
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 1.1e-132 477.6 394 62.9
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 1.1e-132 477.6 442 57.9
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 4.7e-131 472.2 402 62.2
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 8.0e-131 471.5 451 57.4
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 2.3e-130 469.9 411 59.4
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 3.0e-130 469.5 352 67.9
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 3.0e-130 469.5 452 57.1
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 4.0e-130 469.2 450 56.7
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 5.2e-130 468.8 428 59.6
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 2.6e-129 466.5 446 55.6
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 4.4e-129 465.7 450 56.4
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 4.4e-129 465.7 412 58.5
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 5.7e-129 465.3 447 55.9
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 5.7e-129 465.3 490 55.9
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 1.7e-128 463.8 403 60.8
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 3.7e-128 462.6 355 67.6
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 4.1e-127 459.1 432 57.4
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 1.2e-126 457.6 389 62.2
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 3.5e-126 456.1 455 54.9
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 4.6e-126 455.7 449 55.7
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 5.9e-126 455.3 445 55.5
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 1.7e-125 453.8 438 55.9
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 1.7e-125 453.8 425 57.6
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 5.0e-125 452.2 451 54.1
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 6.6e-125 451.8 456 53.7
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 8.6e-125 451.4 394 64.2
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 2.5e-124 449.9 444 55.4
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 5.6e-124 448.7 423 58.2
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 1.6e-123 447.2 419 57.5
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 4.7e-123 445.7 464 53.9
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 8.0e-123 444.9 513 52.8
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 1.0e-122 444.5 455 54.3
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 1.0e-122 444.5 448 54.9
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 1.0e-122 444.5 387 59.7
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 3.1e-122 443.0 451 54.5
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 3.1e-122 443.0 447 55.3
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 4.0e-122 442.6 455 54.3
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 1.5e-121 440.7 456 54.2
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 1.5e-121 440.7 456 54.2
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 2.6e-121 439.9 384 59.6
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 2.0e-118 430.3 448 55.8
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 3.5e-118 429.5 399 60.7
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 4.6e-118 429.1 462 54.3
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 1.7e-117 427.2 483 49.3
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 5.2e-114 415.6 416 53.1
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 6.8e-114 415.2 432 53.0
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 6.8e-114 415.2 428 55.6
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 8.9e-114 414.8 446 52.5
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 3.4e-113 412.9 354 61.0
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 5.8e-113 412.1 446 52.2
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 1.3e-112 411.0 410 54.6
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 1.7e-112 410.6 345 63.5
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 2.9e-112 409.8 433 53.1
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 9.2e-111 404.8 430 51.6
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 2.1e-110 403.7 460 52.4
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 2.8e-107 393.3 427 54.1
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 2.8e-107 393.3 403 52.9
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 4.7e-107 392.5 422 49.5
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 3.1e-106 389.8 398 52.3
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 6.4e-104 382.1 485 46.6
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 2.1e-102 377.1 269 69.9
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 1.7e-101 374.0 465 47.5
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 2.3e-101 373.6 299 59.2
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 8.6e-101 371.7 383 52.5
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 8.6e-101 371.7 454 48.5
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 2.5e-100 370.2 286 64.7
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 5.2e-98 362.5 460 48.3
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 2.0e-97 360.5 250 70.8
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 1.6e-94 350.9 419 46.5
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 5.6e-92 342.4 282 61.7
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 5.3e-90 335.9 373 51.5
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 9.9e-89 331.6 478 43.3
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 9.3e-87 325.1 311 51.8
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 1.7e-85 320.9 425 44.5
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 7.4e-84 315.5 399 45.1
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 1.3e-83 314.7 399 45.4
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 4.8e-83 312.8 399 44.9
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 4.5e-81 306.2 317 49.8
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 6.4e-80 302.4 353 50.1
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 4.2e-79 299.7 388 43.8
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 5.5e-79 299.3 388 43.8
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 7.9e-78 295.4 299 58.2
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 5.1e-77 292.7 377 44.0
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 1.9e-76 290.8 424 42.0
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 5.6e-76 289.3 376 44.4
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 3.5e-70 270.0 186 69.9
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.2e-57 228.4 489 35.2
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 2.1e-54 217.6 142 73.9
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 2.1e-54 217.6 142 73.9
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 6.9e-50 202.6 200 53.5
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 3.8e-48 196.8 153 62.7
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 2.7e-46 190.7 125 70.4
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 2.5e-39 167.5 156 58.3
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 5.7e-36 156.4 94 77.7
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 1.7e-35 154.8 166 50.6
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 4.4e-28 130.2 145 50.3
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 8.3e-27 125.9 131 52.7
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 3.2e-23 114.0 84 64.3
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 4.2e-23 113.6 98 54.1
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 5.5e-23 113.2 114 50.0
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 1.6e-22 111.7 94 57.4
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 3.6e-22 110.5 94 55.3
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 1.4e-21 108.6 101 53.5
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 3.4e-20 104.0 166 39.2
DCAR_030783 Daucus carota HOM05D003649 ORTHO05D004498 2.8e-14 84.3 170 38.2
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 2.8e-14 84.3 99 49.5
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 3.0e-13 80.9 60 65.0
C07p16950 Brassica napus HOM05D003649 ORTHO05D027520 2.9e-11 74.3 236 28.4
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 6.4e-11 73.2 52 59.6
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 6.4e-11 73.2 52 59.6
BolC7t42195H Brassica oleracea HOM05D003649 ORTHO05D040526 6.4e-11 73.2 94 47.9
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 1.8e-10 71.6 49 67.3
MBI19_g34544_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 4.1e-10 70.5 39 87.2
SEGI_11889 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 1.3e-08 65.5 153 32.0
C09p35530 Brassica napus HOM05D003649 ORTHO05D004498 5.6e-07 60.1 45 55.6
BolC7t42200H Brassica oleracea HOM05D003649 ORTHO05D027520 4.7e-06 57.0 89 33.7


User provided reference genes

Program Settings