Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G3119 Fragaria x ananassa HOM05D002939 ORTHO05D035807 4.4e-118 427.9 213 100.0
FAN25G1360 Fragaria x ananassa HOM05D002939 ORTHO05D035807 4.2e-52 208.8 176 64.8
FAN21G2657 Fragaria x ananassa HOM05D002939 ORTHO05D035807 4.8e-48 195.3 99 92.9
RcHm_v2.0_Chr5g0035151 Rosa chinensis HOM05D002939 ORTHO05D003391 3.0e-21 106.3 253 36.4
COL.COLO4_09468 Corchorus olitorius HOM05D002939 ORTHO05D003391 6.2e-19 98.6 235 31.5
EL10Ac4g08081 Beta vulgaris HOM05D002939 ORTHO05D003391 6.8e-18 95.1 191 30.9
Duzib268G1116 Durio zibethinus HOM05D002939 ORTHO05D003391 6.8e-18 95.1 224 33.0
Duzib213G1065 Durio zibethinus HOM05D002939 ORTHO05D003391 1.2e-17 94.4 236 33.9
Manes.15G083700 Manihot esculenta HOM05D002939 ORTHO05D003391 4.4e-17 92.4 230 30.0
Thecc.07G073100 Theobroma cacao HOM05D002939 ORTHO05D003391 1.4e-15 87.4 253 29.2
CANSAT11G1650 Cannabis sativa HOM05D002939 ORTHO05D003391 5.4e-15 85.5 224 30.4
Duzib213G0790 Durio zibethinus HOM05D002939 ORTHO05D003391 5.4e-15 85.5 227 31.3
CsaV3_3G044410 Cucumis sativus L. HOM05D002939 ORTHO05D003391 9.2e-15 84.7 221 29.9
Lsat_1_v5_gn_4_68920 Lactuca sativa HOM05D002939 ORTHO05D003391 9.2e-15 84.7 229 28.8
Nitab4.5_0003018g0050 Nicotiana tabacum HOM05D002939 ORTHO05D003391 1.2e-14 84.3 230 29.1
Aqoxy4G01374 Aquilegia oxysepala HOM05D002939 ORTHO05D003391 1.6e-14 84.0 219 27.9
BraA07t27786Z Brassica rapa HOM05D002939 ORTHO05D003391 2.0e-14 83.6 205 29.8
Sed0013833 Sechium edule HOM05D002939 ORTHO05D003391 2.0e-14 83.6 221 29.4
THA.LOC104804063 Tarenaya hassleriana HOM05D002939 ORTHO05D003391 2.0e-14 83.6 237 30.0
TWI38G0608 Tripterygium wilfordii HOM05D002939 ORTHO05D003391 2.0e-14 83.6 223 30.0
THA.LOC104814495 Tarenaya hassleriana HOM05D002939 ORTHO05D003391 2.7e-14 83.2 201 29.9
BcaC06g36772 Brassica carinata HOM05D002939 ORTHO05D003391 3.5e-14 82.8 232 29.3
C07p00100 Brassica napus HOM05D002939 ORTHO05D003391 3.5e-14 82.8 232 29.3
BolC7t40461H Brassica oleracea HOM05D002939 ORTHO05D003391 3.5e-14 82.8 232 29.3
AL3G53990 Arabidopsis lyrata HOM05D002939 ORTHO05D003391 4.6e-14 82.4 225 28.0
Ciclev10016505m.g Citrus clementina HOM05D002939 ORTHO05D003391 4.6e-14 82.4 251 25.1
HanXRQChr10g0297091 Helianthus annuus HOM05D002939 ORTHO05D003391 4.6e-14 82.4 237 26.6
Nitab4.5_0009520g0010 Nicotiana tabacum HOM05D002939 ORTHO05D003391 4.6e-14 82.4 230 29.1
COL.COLO4_13700 Corchorus olitorius HOM05D002939 ORTHO05D003391 7.8e-14 81.6 251 25.9
Thhalv10002089m.g Eutrema salsugineum HOM05D002939 ORTHO05D003391 7.8e-14 81.6 208 28.8
Psat5g270120 Pisum sativum HOM05D002939 ORTHO05D003391 7.8e-14 81.6 205 29.3
Sp3g34060 Schrenkiella parvula HOM05D002939 ORTHO05D003391 7.8e-14 81.6 232 28.4
Potri.019G104500 Populus trichocarpa HOM05D002939 ORTHO05D003391 1.0e-13 81.3 248 24.6
MELO3C018202.2 Cucumis melo HOM05D002939 ORTHO05D003391 1.3e-13 80.9 221 29.4
Solyc07g054450.4 Solanum lycopersicum HOM05D002939 ORTHO05D003391 1.3e-13 80.9 230 25.7
Sopen07g028390 Solanum pennellii HOM05D002939 ORTHO05D003391 1.3e-13 80.9 230 25.7
TWI38G1430 Tripterygium wilfordii HOM05D002939 ORTHO05D003391 1.3e-13 80.9 226 31.4
TWI38G0298 Tripterygium wilfordii HOM05D002939 ORTHO05D003391 1.7e-13 80.5 223 32.3
Atru.chr2.2835 Acer truncatum HOM05D002939 ORTHO05D003391 2.3e-13 80.1 233 27.9
ECA234G1210 Erigeron canadensis HOM05D002939 ORTHO05D003391 2.3e-13 80.1 243 25.1
Peaxi162Scf00007g02859 Petunia axillaris HOM05D002939 ORTHO05D003391 2.3e-13 80.1 231 28.1
PGSC0003DMG400018322 Solanum tuberosum HOM05D002939 ORTHO05D003391 2.3e-13 80.1 230 26.1
AT2G20825 Arabidopsis thaliana HOM05D002939 ORTHO05D003391 3.0e-13 79.7 225 25.3
AT4G28190 Arabidopsis thaliana HOM05D002939 ORTHO05D003391 3.0e-13 79.7 219 26.9
Nitab4.5_0007732g0030 Nicotiana tabacum HOM05D002939 ORTHO05D003391 3.0e-13 79.7 216 27.8
Aqoxy1G02703 Aquilegia oxysepala HOM05D002939 ORTHO05D003391 3.9e-13 79.3 229 26.6
Cc00_g21110 Coffea canephora HOM05D002939 ORTHO05D003391 3.9e-13 79.3 233 27.9
Potri.013G145400 Populus trichocarpa HOM05D002939 ORTHO05D003391 3.9e-13 79.3 248 24.2
vmacro09269 Vaccinium macrocarpon HOM05D002939 ORTHO05D003391 3.9e-13 79.3 224 26.8
Aa31LG2G22060 Aethionema arabicum HOM05D002939 ORTHO05D003391 5.0e-13 79.0 209 27.8
Carub.0003s3545 Capsella rubella HOM05D002939 ORTHO05D003391 6.6e-13 78.6 225 28.0
Duzib052G0602 Durio zibethinus HOM05D002939 ORTHO05D003391 6.6e-13 78.6 239 25.5
Glyma.06G297100 Glycine max HOM05D002939 ORTHO05D003391 6.6e-13 78.6 243 24.7
AL7G24410 Arabidopsis lyrata HOM05D002939 ORTHO05D003391 8.6e-13 78.2 219 26.5
Carub.0007s1257 Capsella rubella HOM05D002939 ORTHO05D003391 8.6e-13 78.2 219 26.0
FvH4_6g44900 Fragaria vesca HOM05D002939 ORTHO05D003391 8.6e-13 78.2 208 26.9
FAN14G1254 Fragaria x ananassa HOM05D002939 ORTHO05D003391 8.6e-13 78.2 208 26.9
RcHm_v2.0_Chr2g0162081 Rosa chinensis HOM05D002939 ORTHO05D003391 1.1e-12 77.8 208 26.4
CANSAT64G1668 Cannabis sativa HOM05D002939 ORTHO05D003391 1.5e-12 77.4 247 27.5
Duzib248G1539 Durio zibethinus HOM05D002939 ORTHO05D003391 1.5e-12 77.4 238 26.5
HanXRQChr05g0140461 Helianthus annuus HOM05D002939 ORTHO05D003391 1.5e-12 77.4 230 29.1
Hund08038 Selenicereus undatus HOM05D002939 ORTHO05D003391 1.5e-12 77.4 231 27.7
Atru.chr6.3050 Acer truncatum HOM05D002939 ORTHO05D003391 1.9e-12 77.0 239 26.4
Gohir.A12G137100 Gossypium hirsutum HOM05D002939 ORTHO05D003391 1.9e-12 77.0 238 25.6
Gohir.D12G141000 Gossypium hirsutum HOM05D002939 ORTHO05D003391 1.9e-12 77.0 206 26.2
Gorai.008G152400 Gossypium raimondii HOM05D002939 ORTHO05D003391 1.9e-12 77.0 206 26.2
Lj3g0001486 Lotus japonicus HOM05D002939 ORTHO05D003391 1.9e-12 77.0 194 29.9
MD09G1092100 Malus domestica HOM05D002939 ORTHO05D003391 1.9e-12 77.0 238 27.3
Gohir.A03G159200 Gossypium hirsutum HOM05D002939 ORTHO05D003391 2.5e-12 76.6 238 27.3
Gohir.D02G182400 Gossypium hirsutum HOM05D002939 ORTHO05D003391 2.5e-12 76.6 238 27.3
Lalb_Chr03g0029231 Lupinus albus HOM05D002939 ORTHO05D003391 2.5e-12 76.6 234 25.2
Medtr0072s0040 Medicago truncatula HOM05D002939 ORTHO05D003391 2.5e-12 76.6 244 24.2
Aa31LG8G17660 Aethionema arabicum HOM05D002939 ORTHO05D003391 3.3e-12 76.3 205 28.8
CiPaw.04G123300 Carya illinoinensis HOM05D002939 ORTHO05D003391 3.3e-12 76.3 209 24.4
Gorai.005G204800 Gossypium raimondii HOM05D002939 ORTHO05D003391 3.3e-12 76.3 238 26.9
Lj3g0000198 Lotus japonicus HOM05D002939 ORTHO05D003391 3.3e-12 76.3 238 26.9
Prupe.3G232900 Prunus persica HOM05D002939 ORTHO05D003391 3.3e-12 76.3 238 26.1
Sp7g26140 Schrenkiella parvula HOM05D002939 ORTHO05D003391 3.3e-12 76.3 219 26.0
Thecc.02G173400 Theobroma cacao HOM05D002939 ORTHO05D003391 3.3e-12 76.3 238 25.6
TPR.G27079 Trifolium pratense HOM05D002939 ORTHO05D003391 3.3e-12 76.3 239 25.9
Ah.06g183610 Amaranthus hybridus HOM05D000101 ORTHO05D000089 4.3e-12 75.9 223 30.9
BcaNung01589 Brassica carinata HOM05D002939 ORTHO05D003391 7.3e-12 75.1 246 27.2
A01p19610 Brassica napus HOM05D002939 ORTHO05D003391 7.3e-12 75.1 215 26.0
Eucgr.K00939 Eucalyptus grandis HOM05D002939 ORTHO05D003391 7.3e-12 75.1 229 26.2
MD17G1082000 Malus domestica HOM05D002939 ORTHO05D003391 7.3e-12 75.1 238 26.9
CSS0026767 Camellia sinensis var. sinensis HOM05D002939 ORTHO05D003391 1.2e-11 74.3 222 26.1
CARHR111530 Cardamine hirsuta HOM05D002939 ORTHO05D003391 1.2e-11 74.3 208 28.8
Cpa.g.sc80.104 Carica papaya HOM05D002939 ORTHO05D003391 1.2e-11 74.3 237 28.3
FAN02G0547 Fragaria x ananassa HOM05D002939 ORTHO05D003391 1.2e-11 74.3 230 25.7
Medtr2g090080 Medicago truncatula HOM05D002939 ORTHO05D003391 1.2e-11 74.3 241 25.7
Prupe.4G188700 Prunus persica HOM05D002939 ORTHO05D003391 1.2e-11 74.3 215 30.7
C01p24640 Brassica napus HOM05D002939 ORTHO05D003391 1.6e-11 73.9 215 25.6
TPR.G21653 Trifolium pratense HOM05D002939 ORTHO05D003391 1.6e-11 73.9 243 24.7
Actinidia30483 Actinidia chinensis HOM05D002939 ORTHO05D003391 2.1e-11 73.6 223 26.5
FAN05G5001 Fragaria x ananassa HOM05D002939 ORTHO05D003391 2.1e-11 73.6 208 26.4
PGR142G4146 Punica granatum HOM05D002939 ORTHO05D003391 2.1e-11 73.6 218 23.4
CSS0037606 Camellia sinensis var. sinensis HOM05D002939 ORTHO05D003391 2.8e-11 73.2 237 25.7
Dinv23696 Davidia involucrata HOM05D002939 ORTHO05D003391 2.8e-11 73.2 221 25.3
Manes.13G150600 Manihot esculenta HOM05D002939 ORTHO05D003391 2.8e-11 73.2 231 24.7
PSO541G3829 Papaver somniferum HOM05D002939 ORTHO05D003391 2.8e-11 73.2 242 29.3
Sed0018022 Sechium edule HOM05D002939 ORTHO05D003391 2.8e-11 73.2 232 25.9
arahy.Tifrunner.gnm1.ann1.A9FWXT Arachis hypogaea HOM05D002939 ORTHO05D003391 3.6e-11 72.8 214 24.8
arahy.Tifrunner.gnm1.ann1.SAD4HJ Arachis hypogaea HOM05D002939 ORTHO05D003391 3.6e-11 72.8 214 24.8
Cpa.g.sc34.111 Carica papaya HOM05D002939 ORTHO05D003391 3.6e-11 72.8 207 25.6
Glyma.06G250500 Glycine max HOM05D002939 ORTHO05D003391 3.6e-11 72.8 233 29.6
PSO675G2902 Papaver somniferum HOM05D002939 ORTHO05D003391 3.6e-11 72.8 242 26.4
Psat7g199800 Pisum sativum HOM05D002939 ORTHO05D003391 3.6e-11 72.8 232 25.4
GSVIVG01030570001 Vitis vinifera HOM05D002939 ORTHO05D003391 3.6e-11 72.8 220 25.5
Duzib132G0253 Durio zibethinus HOM05D002939 ORTHO05D003391 4.7e-11 72.4 239 24.7
CiPaw.11G175200 Carya illinoinensis HOM05D002939 ORTHO05D003391 6.2e-11 72.0 259 26.3
Glyma.06G250300 Glycine max HOM05D002939 ORTHO05D003391 6.2e-11 72.0 217 30.9
MBI02_g10552_MAGBIO Magnolia biondii HOM05D002939 ORTHO05D003391 6.2e-11 72.0 219 26.5
Oeu041295.1 Olea europaea HOM05D002939 ORTHO05D003391 6.2e-11 72.0 234 23.9
TWI18G0096 Tripterygium wilfordii HOM05D002939 ORTHO05D003391 6.2e-11 72.0 206 25.7
BcaC06g32639 Brassica carinata HOM05D002939 ORTHO05D003391 8.1e-11 71.6 215 26.0
A03p57900 Brassica napus HOM05D002939 ORTHO05D003391 8.1e-11 71.6 215 26.0
C07p56020 Brassica napus HOM05D002939 ORTHO05D003391 8.1e-11 71.6 215 26.0
BraA03t14854Z Brassica rapa HOM05D002939 ORTHO05D003391 8.1e-11 71.6 215 26.0
Glyma.06G250400 Glycine max HOM05D002939 ORTHO05D003391 8.1e-11 71.6 235 30.2
Lalb_Chr01g0005401 Lupinus albus HOM05D002939 ORTHO05D003391 8.1e-11 71.6 237 24.5
BcaC09g50506 Brassica carinata HOM05D002939 ORTHO05D003391 1.1e-10 71.2 214 25.2
HPP92_001810 Vanilla planifolia HOM05D002939 ORTHO05D003391 1.1e-10 71.2 230 25.2
BcaB03g16872 Brassica carinata HOM05D002939 ORTHO05D003391 1.4e-10 70.9 230 26.1
Manes.12G079700 Manihot esculenta HOM05D002939 ORTHO05D003391 1.4e-10 70.9 207 24.2
PSO832G1320 Papaver somniferum HOM05D002939 ORTHO05D003391 1.4e-10 70.9 210 25.7
Peaxi162Scf00485g00037 Petunia axillaris HOM05D002939 ORTHO05D003391 1.4e-10 70.9 243 28.4
TAR626G0871 Trochodendron aralioides HOM05D002939 ORTHO05D003391 1.4e-10 70.9 205 25.4
Dinv15472 Davidia involucrata HOM05D002939 ORTHO05D003391 1.8e-10 70.5 221 24.9
Lj3g0007977 Lotus japonicus HOM05D002939 ORTHO05D003391 1.8e-10 70.5 228 26.3
Lj3g0016336 Lotus japonicus HOM05D002939 ORTHO05D003391 2.3e-10 70.1 217 27.6
Nn1g06722 Nelumbo nucifera HOM05D002939 ORTHO05D003391 2.3e-10 70.1 221 24.4
ClCG02G001270 Citrullus lanatus HOM05D002939 ORTHO05D003391 3.1e-10 69.7 207 24.6
Glyma.06G252100 Glycine max HOM05D002939 ORTHO05D003391 3.1e-10 69.7 215 25.1
FAN09G4592 Fragaria x ananassa HOM05D002939 ORTHO05D003391 4.0e-10 69.3 54 51.9
Sed0025006 Sechium edule HOM05D002939 ORTHO05D003391 4.0e-10 69.3 229 24.5
CARHR235900 Cardamine hirsuta HOM05D002939 ORTHO05D003391 5.2e-10 68.9 206 26.7
CiPaw.03G170900 Carya illinoinensis HOM05D002939 ORTHO05D003391 5.2e-10 68.9 207 23.2
CsaV3_7G004160 Cucumis sativus L. HOM05D002939 ORTHO05D003391 5.2e-10 68.9 207 24.6
PSO210G1245 Papaver somniferum HOM05D002939 ORTHO05D003391 5.2e-10 68.9 235 24.3
SHI10467 Sapria himalayana HOM05D002939 ORTHO05D003391 8.9e-10 68.2 205 28.3
Zm00001eb369850 Zea mays HOM05D002939 ORTHO05D003391 8.9e-10 68.2 244 24.2
MELO3C018761.2 Cucumis melo HOM05D002939 ORTHO05D003391 3.4e-09 66.2 228 21.9
Thhalv10026038m.g Eutrema salsugineum HOM05D002939 ORTHO05D003391 3.4e-09 66.2 226 24.8
Glyma.12G108000 Glycine max HOM05D002939 ORTHO05D003391 3.4e-09 66.2 243 23.5
Eucgr.F03351 Eucalyptus grandis HOM05D002939 ORTHO05D003391 5.8e-09 65.5 203 32.5
Nn1g03934 Nelumbo nucifera HOM05D002939 ORTHO05D003391 5.8e-09 65.5 51 52.9
Migut.E00991 Erythranthe guttata HOM05D002939 ORTHO05D003391 7.5e-09 65.1 213 26.8
Phvul.011G112300 Phaseolus vulgaris HOM05D002939 ORTHO05D003391 9.8e-09 64.7 52 50.0
Sopen12g005240 Solanum pennellii HOM05D002939 ORTHO05D003391 9.8e-09 64.7 203 23.6
TWI75G1131 Tripterygium wilfordii HOM05D002939 ORTHO05D003391 9.8e-09 64.7 52 50.0
Migut.B00918 Erythranthe guttata HOM05D002939 ORTHO05D003391 1.3e-08 64.3 204 26.0
Sabra13G0117100 Salix brachista HOM05D002939 ORTHO05D003391 1.3e-08 64.3 52 48.1
BolC1t02414H Brassica oleracea HOM05D002939 ORTHO05D003391 1.7e-08 63.9 51 52.9
BraA01t01895Z Brassica rapa HOM05D002939 ORTHO05D003391 1.7e-08 63.9 51 52.9
Migut.E00987 Erythranthe guttata HOM05D002939 ORTHO05D003391 1.7e-08 63.9 209 25.8
Peaxi162Scf01111g00019 Petunia axillaris HOM05D002939 ORTHO05D003391 2.2e-08 63.5 215 25.6
SEGI_02317 Sequoiadendron giganteum HOM05D002939 ORTHO05D003391 2.2e-08 63.5 52 59.6
Migut.B00917 Erythranthe guttata HOM05D002939 ORTHO05D003391 2.9e-08 63.2 204 26.5
Os01g0780800 Oryza sativa ssp. japonica HOM05D002939 ORTHO05D003391 2.9e-08 63.2 228 25.4
Lj8A116T74 Lonicera japonica HOM05D002939 ORTHO05D003391 3.7e-08 62.8 50 52.0
PGSC0003DMG400043421 Solanum tuberosum HOM05D002939 ORTHO05D003391 3.7e-08 62.8 212 25.9
DCAR_021229 Daucus carota HOM05D002939 ORTHO05D003391 4.9e-08 62.4 208 23.6
Solyc12g010370.1 Solanum lycopersicum HOM05D002939 ORTHO05D003391 4.9e-08 62.4 205 22.9
Solyc12g010755.1 Solanum lycopersicum HOM05D002939 ORTHO05D003391 4.9e-08 62.4 205 22.9
BolC7t46079H Brassica oleracea HOM05D002939 ORTHO05D003391 6.4e-08 62.0 51 52.9
Migut.E00988 Erythranthe guttata HOM05D002939 ORTHO05D003391 6.4e-08 62.0 209 25.8
Cc02_g28040 Coffea canephora HOM05D002939 ORTHO05D003391 1.4e-07 60.8 201 24.4
MD03G1220200 Malus domestica HOM05D002939 ORTHO05D003391 1.4e-07 60.8 63 44.4
SGA_v2.0_scaffold34G13712 Striga asiatica HOM05D002939 ORTHO05D003391 1.4e-07 60.8 196 25.5
Gohir.D05G361500 Gossypium hirsutum HOM05D002939 ORTHO05D003391 2.4e-07 60.1 93 35.5
Gorai.009G431300 Gossypium raimondii HOM05D002939 ORTHO05D003391 2.4e-07 60.1 93 35.5
Os05g0502700 Oryza sativa ssp. japonica HOM05D002939 ORTHO05D003391 2.4e-07 60.1 236 23.7
RcHm_v2.0_Chr5g0037661 Rosa chinensis HOM05D002939 ORTHO05D341561 2.4e-07 60.1 38 71.1
Lalb_Chr22g0356401 Lupinus albus HOM05D002939 ORTHO05D003391 3.2e-07 59.7 51 45.1
Gohir.A04G026800 Gossypium hirsutum HOM05D002939 ORTHO05D003391 4.1e-07 59.3 235 28.9
CAN.G318.16 Capsicum annuum HOM05D002939 ORTHO05D003391 9.2e-07 58.2 218 23.9
Gohir.A04G026700 Gossypium hirsutum HOM05D002939 ORTHO05D003391 9.2e-07 58.2 235 28.5
Actinidia05140 Actinidia chinensis HOM05D002939 ORTHO05D003391 2.1e-06 57.0 51 49.0
Migut.B00919 Erythranthe guttata HOM05D002939 ORTHO05D003391 2.1e-06 57.0 204 24.5
CAN.G274.5 Capsicum annuum HOM05D002939 ORTHO05D003391 2.7e-06 56.6 218 23.4
HanXRQChr17g0542471 Helianthus annuus HOM05D002939 ORTHO05D003391 3.5e-06 56.2 50 48.0


User provided reference genes

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