Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G3117 Fragaria x ananassa HOM05D005337 ORTHO05D006567 9.3e-193 677.9 809 100.0
FvH4_3g05050 Fragaria vesca HOM05D005337 ORTHO05D006567 5.3e-180 635.6 813 96.3
FAN11G3121 Fragaria x ananassa HOM05D005337 ORTHO05D006567 5.3e-180 635.6 813 96.3
FAN25G3288 Fragaria x ananassa HOM05D005337 ORTHO05D006567 5.3e-180 635.6 813 96.7
FAN21G3303 Fragaria x ananassa HOM05D005337 ORTHO05D006567 1.4e-143 514.6 416 88.7
MD10G1258300 Malus domestica HOM05D005337 ORTHO05D006567 5.1e-106 389.8 805 84.3
Prupe.4G085500 Prunus persica HOM05D005337 ORTHO05D006567 7.3e-105 386.0 825 82.4
CSS0008957 Camellia sinensis var. sinensis HOM05D005337 ORTHO05D006567 1.6e-72 278.5 778 77.5
QL05p055125 Quercus lobata HOM05D005337 ORTHO05D006567 1.8e-71 275.0 786 76.7
Eucgr.E02454 Eucalyptus grandis HOM05D005337 ORTHO05D006567 4.5e-70 270.4 665 82.4
Ciclev10014263m.g Citrus clementina HOM05D005337 ORTHO05D006567 1.0e-69 269.2 795 71.9
Manes.01G172900 Manihot esculenta HOM05D005337 ORTHO05D006567 2.2e-69 268.1 786 70.2
Glyma.15G090700 Glycine max HOM05D005337 ORTHO05D006567 8.5e-69 266.2 775 76.0
THA.LOC104820664 Tarenaya hassleriana HOM05D005337 ORTHO05D006567 5.5e-68 263.5 665 86.2
MSTRG.7512 Avicennia marina HOM05D005337 ORTHO05D006567 4.6e-67 260.4 770 66.1
Nitab4.5_0000315g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 1.4e-66 258.8 710 77.9
Glyma.13G221600 Glycine max HOM05D005337 ORTHO05D006567 2.3e-66 258.1 768 76.4
Lj2C569T6 Lonicera japonica HOM05D005337 ORTHO05D006567 5.1e-66 256.9 769 74.8
ClCG01G024880 Citrullus lanatus HOM05D005337 ORTHO05D006567 4.3e-65 253.8 683 78.8
RcHm_v2.0_Chr3g0490541 Rosa chinensis HOM05D005337 ORTHO05D006567 4.3e-65 253.8 143 87.4
CiPaw.09G119800 Carya illinoinensis HOM05D005337 ORTHO05D006567 1.7e-64 251.9 700 82.7
Peaxi162Scf00045g00242 Petunia axillaris HOM05D005337 ORTHO05D006567 1.7e-64 251.9 710 80.3
TAR624G0614 Trochodendron aralioides HOM05D005337 ORTHO05D006567 2.2e-64 251.5 789 73.5
Nitab4.5_0002071g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 3.7e-64 250.8 710 77.3
CAN.G36.25 Capsicum annuum HOM05D005337 ORTHO05D006567 8.2e-64 249.6 677 79.9
Gohir.D10G045100 Gossypium hirsutum HOM05D005337 ORTHO05D006567 1.8e-63 248.4 792 74.0
Sed0025020 Sechium edule HOM05D005337 ORTHO05D006567 1.8e-63 248.4 696 78.2
TWI73G0840 Tripterygium wilfordii HOM05D005337 ORTHO05D006567 3.1e-63 247.7 691 82.8
arahy.Tifrunner.gnm1.ann1.QR7D30 Arachis hypogaea HOM05D005337 ORTHO05D006567 5.3e-63 246.9 678 83.3
PGR035G0002 Punica granatum HOM05D005337 ORTHO05D006567 9.1e-63 246.1 670 83.7
MELO3C007107.2 Cucumis melo HOM05D005337 ORTHO05D006567 1.2e-62 245.7 800 71.2
Cfa000901 Carpinus fangiana HOM05D005337 ORTHO05D006567 7.7e-62 243.0 700 82.3
arahy.Tifrunner.gnm1.ann1.RN8PQ8 Arachis hypogaea HOM05D005337 ORTHO05D006567 1.7e-61 241.9 688 82.3
arahy.Tifrunner.gnm1.ann1.WGPX7I Arachis hypogaea HOM05D005337 ORTHO05D006567 1.7e-61 241.9 688 82.3
CsaV3_6G052010 Cucumis sativus L. HOM05D005337 ORTHO05D006567 1.7e-61 241.9 799 70.3
DCAR_004624 Daucus carota HOM05D005337 ORTHO05D000307 2.2e-61 241.5 696 78.2
Gorai.011G048000 Gossypium raimondii HOM05D005337 ORTHO05D006567 1.1e-60 239.2 747 77.0
Rhsim09G0051200 Rhododendron simsii HOM05D005337 ORTHO05D006567 2.5e-60 238.0 657 82.2
PGSC0003DMG400002287 Solanum tuberosum HOM05D005337 ORTHO05D006567 3.2e-60 237.7 742 73.9
Gohir.A10G043900 Gossypium hirsutum HOM05D005337 ORTHO05D006567 7.2e-60 236.5 791 73.3
Psat3g019680 Pisum sativum HOM05D005337 ORTHO05D006567 7.2e-60 236.5 736 78.4
Solyc08g023490.4 Solanum lycopersicum HOM05D005337 ORTHO05D006567 3.6e-59 234.2 709 77.6
RcHm_v2.0_Chr5g0014911 Rosa chinensis HOM05D005337 ORTHO05D006567 7.9e-59 233.0 123 91.9
TAR624G0918 Trochodendron aralioides HOM05D005337 ORTHO05D006567 5.1e-58 230.3 401 60.6
Sp1g26130 Schrenkiella parvula HOM05D005337 ORTHO05D006567 1.5e-57 228.8 670 80.3
Sopen08g008640 Solanum pennellii HOM05D005337 ORTHO05D006567 1.5e-57 228.8 709 77.4
Rhsim09G0050900 Rhododendron simsii HOM05D005337 ORTHO05D006567 2.6e-57 228.0 673 74.0
Haze_05675 Corylus avellana HOM05D005337 ORTHO05D006567 7.4e-57 226.5 244 59.0
Dinv21523 Davidia involucrata HOM05D005337 ORTHO05D006567 4.8e-56 223.8 231 55.4
Actinidia13442 Actinidia chinensis HOM05D005337 ORTHO05D006567 2.4e-55 221.5 280 76.8
Phvul.006G168127 Phaseolus vulgaris HOM05D005337 ORTHO05D006567 4.1e-55 220.7 710 79.6
Lj6g0017822 Lotus japonicus HOM05D005337 ORTHO05D006567 5.3e-55 220.3 688 81.2
TPR.G4722 Trifolium pratense HOM05D005337 ORTHO05D006567 5.3e-55 220.3 682 82.3
Atru.BG.302.p Acer truncatum HOM05D005337 ORTHO05D006567 7.0e-55 219.9 276 60.1
VMungo0540G1354 Vigna mungo HOM05D005337 ORTHO05D006567 1.2e-54 219.2 706 79.7
Aa31LG6G5450 Aethionema arabicum HOM05D005337 ORTHO05D006567 2.6e-54 218.0 668 71.6
RcHm_v2.0_Chr3g0490551 Rosa chinensis HOM05D005337 ORTHO05D006567 2.6e-54 218.0 123 87.0
ATR1098G077 Amborella trichopoda HOM05D005337 ORTHO05D006567 1.0e-53 216.1 666 82.7
MBI18_g11220_MAGBIO Magnolia biondii HOM05D005337 ORTHO05D006567 1.3e-53 215.7 667 84.6
Sc05g0006000 Simmondsia chinensis HOM05D005337 ORTHO05D006567 1.3e-53 215.7 259 49.8
FAN21G0118 Fragaria x ananassa HOM05D005337 ORTHO05D006567 2.2e-53 214.9 108 98.1
Nn3g20334 Nelumbo nucifera HOM05D005337 ORTHO05D006567 3.8e-53 214.2 227 53.3
Cc11_g05070 Coffea canephora HOM05D005337 ORTHO05D006567 5.0e-53 213.8 667 80.8
COL.COLO4_31011 Corchorus olitorius HOM05D005337 ORTHO05D006567 8.5e-53 213.0 262 49.2
Medtr2g018550 Medicago truncatula HOM05D005337 ORTHO05D006567 8.5e-53 213.0 348 67.5
Duzib235G0011 Durio zibethinus HOM05D005337 ORTHO05D006567 1.1e-52 212.6 126 77.0
GSVIVG01021547001 Vitis vinifera HOM05D005337 ORTHO05D006567 1.1e-52 212.6 812 67.7
PSO384G4021 Papaver somniferum HOM05D005337 ORTHO05D006567 1.5e-52 212.2 279 71.3
CANSAT35G0686 Cannabis sativa HOM05D005337 ORTHO05D006567 2.5e-52 211.5 238 53.4
Cfa000900 Carpinus fangiana HOM05D005337 ORTHO05D006567 4.2e-52 210.7 737 76.9
Thecc.06G144500 Theobroma cacao HOM05D005337 ORTHO05D006567 4.2e-52 210.7 274 46.4
BraA09t39143Z Brassica rapa HOM05D005337 ORTHO05D006567 5.5e-52 210.3 788 72.2
CARHR029680 Cardamine hirsuta HOM05D005337 ORTHO05D006567 5.5e-52 210.3 696 78.6
Migut.M00881 Erythranthe guttata HOM05D005337 ORTHO05D006567 7.2e-52 209.9 278 65.8
vmacro03433 Vaccinium macrocarpon HOM05D005337 ORTHO05D006567 2.3e-50 204.9 244 48.8
A09p36160 Brassica napus HOM05D005337 ORTHO05D006567 3.9e-50 204.1 775 72.5
Carub.0001s2852 Capsella rubella HOM05D005337 ORTHO05D006567 2.0e-49 201.8 692 78.8
Thhalv10006807m.g Eutrema salsugineum HOM05D005337 ORTHO05D006567 2.6e-49 201.4 670 80.1
SalBow8G2351 Salvia bowleyana HOM05D005337 ORTHO05D006567 1.3e-48 199.1 245 49.0
HanXRQChr04g0116581 Helianthus annuus HOM05D005337 ORTHO05D006567 1.7e-48 198.7 642 84.7
Potri.011G082300 Populus trichocarpa HOM05D005337 ORTHO05D006567 1.7e-48 198.7 786 75.6
AT1G30290 Arabidopsis thaliana HOM05D005337 ORTHO05D006567 2.2e-48 198.4 255 49.0
Cpa.g.sc17.49 Carica papaya HOM05D005337 ORTHO05D006567 2.8e-48 198.0 635 81.4
AUR62017465 Chenopodium quinoa HOM05D005337 ORTHO05D006567 4.8e-48 197.2 147 61.2
AL1G44240 Arabidopsis lyrata HOM05D005337 ORTHO05D006567 6.3e-48 196.8 235 50.2
AUR62025016 Chenopodium quinoa HOM05D005337 ORTHO05D006567 6.3e-48 196.8 147 61.2
EL10Ac9g22478 Beta vulgaris HOM05D005337 ORTHO05D006567 1.8e-47 195.3 253 43.9
BcaB07g32639 Brassica carinata HOM05D005337 ORTHO05D006567 4.1e-47 194.1 129 72.1
BcaC05g27061 Brassica carinata HOM05D005337 ORTHO05D006567 5.3e-47 193.7 151 64.9
C05p29200 Brassica napus HOM05D005337 ORTHO05D006567 5.3e-47 193.7 151 64.9
BolC5t31652H Brassica oleracea HOM05D005337 ORTHO05D006567 5.3e-47 193.7 151 64.9
C05p29160 Brassica napus HOM05D005337 ORTHO05D006567 7.0e-47 193.4 130 72.3
QL07p034390 Quercus lobata HOM05D005337 ORTHO05D006567 7.0e-47 193.4 124 75.0
BcaC05g27058 Brassica carinata HOM05D005337 ORTHO05D006567 2.6e-46 191.4 130 71.5
BolC5t31647H Brassica oleracea HOM05D005337 ORTHO05D006567 2.6e-46 191.4 130 71.5
Hund17688 Selenicereus undatus HOM05D005337 ORTHO05D006567 2.6e-46 191.4 269 46.5
Sabra11G0065300 Salix brachista HOM05D005337 ORTHO05D006567 2.2e-45 188.3 666 84.1
SGA_v2.0_scaffold223G42824 Striga asiatica HOM05D005337 ORTHO05D006567 2.9e-45 188.0 128 69.5
Aqoxy6G00107 Aquilegia oxysepala HOM05D005337 ORTHO05D006567 3.2e-44 184.5 277 56.0
Ah.01g015050 Amaranthus hybridus HOM05D005337 ORTHO05D006567 7.2e-44 183.3 210 46.7
SHI24905 Sapria himalayana HOM05D005337 ORTHO05D006567 6.1e-43 180.3 228 46.1
CDE02G1473 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 1.0e-42 179.5 396 58.8
CDE05G0694 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 5.2e-42 177.2 127 63.0
HPP92_001622 Vanilla planifolia HOM05D005337 ORTHO05D006567 1.1e-39 169.5 128 64.1
A09p36200 Brassica napus HOM05D005337 ORTHO05D006567 6.5e-37 160.2 112 68.8
Lsat_1_v5_gn_7_27480 Lactuca sativa HOM05D005337 ORTHO05D006567 1.1e-36 159.5 108 65.7
ECA236G3236 Erigeron canadensis HOM05D005337 ORTHO05D006567 1.9e-36 158.7 107 71.0
Os12g0615600 Oryza sativa ssp. japonica HOM05D005337 ORTHO05D006567 3.6e-35 154.5 301 58.1
Rhsim13G0117400 Rhododendron simsii HOM05D005337 ORTHO05D006567 6.1e-35 153.7 101 71.3
Oeu032720.1 Olea europaea HOM05D005337 ORTHO05D006567 1.8e-34 152.1 130 58.5
CAN.G36.12 Capsicum annuum HOM05D005337 ORTHO05D006567 4.0e-34 151.0 102 70.6
Zm00001eb134800 Zea mays HOM05D005337 ORTHO05D006567 3.4e-33 147.9 277 60.3
unitig_37.g12089 Utricularia gibba HOM05D005337 ORTHO05D006567 9.8e-33 146.4 111 63.1
TAR624G0810 Trochodendron aralioides HOM05D005337 ORTHO05D006567 1.5e-28 132.5 111 59.5
Ca_00508_v3 Cicer arietinum L. HOM05D005337 ORTHO05D006567 2.5e-28 131.7 111 60.4
SEGI_37079 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 2.8e-27 128.3 113 53.1
Lalb_Chr15g0086601 Lupinus albus HOM05D005337 ORTHO05D006567 8.0e-27 126.7 87 70.1
Nitab4.5_0000258g0100 Nicotiana tabacum HOM05D005337 ORTHO05D006567 1.0e-26 126.3 250 65.6
BolC5t31646H Brassica oleracea HOM05D005337 ORTHO05D006567 1.4e-26 125.9 112 55.4
Ca_18255_v3 Cicer arietinum L. HOM05D000068 ORTHO05D006567 4.0e-26 124.4 84 71.4
arahy.Tifrunner.gnm1.ann1.S6HMEC Arachis hypogaea HOM05D005337 ORTHO05D006567 5.9e-22 110.5 85 62.4
Sc05g0005990 Simmondsia chinensis HOM05D005337 ORTHO05D006567 7.8e-22 110.2 83 65.1
Atru.chr10.1089 Acer truncatum HOM05D005337 ORTHO05D006567 6.6e-21 107.1 118 48.3
BraA09t39145Z Brassica rapa HOM05D005337 ORTHO05D006567 1.9e-20 105.5 91 57.1
arahy.Tifrunner.gnm1.ann1.1U5Z8B Arachis hypogaea HOM05D005337 ORTHO05D006567 2.6e-17 95.1 95 48.4
SEGI_28981 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 3.2e-15 88.2 74 56.8
Medtr2g018580 Medicago truncatula HOM05D005337 ORTHO05D006567 4.6e-14 84.3 65 63.1
arahy.Tifrunner.gnm1.ann1.W21Z3V Arachis hypogaea HOM05D005337 ORTHO05D006567 1.0e-13 83.2 61 63.9
BcaB07g32630 Brassica carinata HOM05D005337 ORTHO05D006567 1.7e-13 82.4 54 74.1
MD05G1279600 Malus domestica HOM05D005337 ORTHO05D006567 3.0e-13 81.6 50 84.0
SEGI_04521 Sequoiadendron giganteum HOM05D005337 ORTHO05D009920 3.4e-09 68.2 121 30.6
AagrBONN_evm.TU.Sc2ySwM_344.1991 Anthoceros agrestis HOM05D004079 ORTHO05D008352 4.4e-09 67.8 135 29.6
Aqoxy2G00263 Aquilegia oxysepala HOM05D005973 ORTHO05D007285 4.9e-08 64.3 116 31.9
Lj7A578T58 Lonicera japonica HOM05D005973 ORTHO05D007285 8.3e-08 63.5 92 38.0
DCAR_017698 Daucus carota HOM05D006740 ORTHO05D008571 1.1e-07 63.2 116 28.4
Dinv32060 Davidia involucrata HOM05D005973 ORTHO05D007285 1.9e-07 62.4 92 35.9
A03p32960 Brassica napus HOM05D002460 ORTHO05D002716 2.4e-07 62.0 142 30.3
SEGI_16657 Sequoiadendron giganteum HOM05D005337 ORTHO05D023551 2.4e-07 62.0 117 29.1
Hma1.2p1_0579F.1_g182710 Hydrangea macrophylla HOM05D005973 ORTHO05D007285 4.1e-07 61.2 92 37.0
Hma1.2p1_0579F.1_g182720 Hydrangea macrophylla HOM05D005973 ORTHO05D007285 4.1e-07 61.2 108 35.2
Mapoly0096s0019 Marchantia polymorpha HOM05D004079 ORTHO05D005437 5.4e-07 60.8 131 29.8
Aqoxy3G00809 Aquilegia oxysepala HOM05D004079 ORTHO05D005437 7.1e-07 60.5 119 32.8
Dinv05038 Davidia involucrata HOM05D005973 ORTHO05D007285 7.1e-07 60.5 92 37.0
TWI15G0380 Tripterygium wilfordii HOM05D004079 ORTHO05D005437 7.1e-07 60.5 92 37.0
DCAR_025034 Daucus carota HOM05D005973 ORTHO05D007285 1.2e-06 59.7 92 35.9
SalBow5G5059 Salvia bowleyana HOM05D004079 ORTHO05D005437 1.2e-06 59.7 79 36.7
Actinidia07466 Actinidia chinensis HOM05D005337 ORTHO05D006567 1.6e-06 59.3 34 70.6
BcaC01g04443 Brassica carinata HOM05D002460 ORTHO05D002716 1.6e-06 59.3 130 29.2
Phvul.002G180100 Phaseolus vulgaris HOM05D006740 ORTHO05D008571 1.6e-06 59.3 116 29.3
TAR623G1644 Trochodendron aralioides HOM05D005973 ORTHO05D007285 1.6e-06 59.3 116 31.0
C03p40080 Brassica napus HOM05D002460 ORTHO05D002716 2.1e-06 58.9 130 29.2
BolC3t16274H Brassica oleracea HOM05D002460 ORTHO05D002716 2.1e-06 58.9 130 29.2
CAN.G999.30 Capsicum annuum HOM05D004079 ORTHO05D005437 2.1e-06 58.9 93 37.6
AagrBONN_evm.TU.Sc2ySwM_344.4462 Anthoceros agrestis HOM05D004079 ORTHO05D000355 4.6e-06 57.8 91 35.2
Gohir.A02G001400 Gossypium hirsutum HOM05D006740 ORTHO05D008571 4.6e-06 57.8 116 28.4
Gorai.005G002200 Gossypium raimondii HOM05D006740 ORTHO05D008571 4.6e-06 57.8 116 28.4
TAR623G1677 Trochodendron aralioides HOM05D005973 ORTHO05D007285 4.6e-06 57.8 116 30.2
BraA03t12464Z Brassica rapa HOM05D002460 ORTHO05D002716 6.0e-06 57.4 142 29.6
Gohir.D02G001700 Gossypium hirsutum HOM05D006740 ORTHO05D008571 7.8e-06 57.0 116 28.4
MD06G1185900 Malus domestica HOM05D004079 ORTHO05D005437 7.8e-06 57.0 93 32.3


User provided reference genes

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